mRNA_Ecto-sp13_S_contig871.20176.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig871.20176.1
Unique NamemRNA_Ecto-sp13_S_contig871.20176.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig871.20176.1 vs. uniprot
Match: D7G2H5_ECTSI (TLDc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G2H5_ECTSI)

HSP 1 Score: 1031 bits (2667), Expect = 0.000e+0
Identity = 516/555 (92.97%), Postives = 533/555 (96.04%), Query Frame = 2
Query:  278 MEAALSQRRKEMSHAWEDVDRGWHELNQCRVDAGITKPSGSQEGMLRLNVGGSHLNFRRCVLDGKKEPSATWALGNLFENVWDDRLPRDSDGRIVLDESPACVKHLIHSLIESSGAAPGSLPRGETLAPDEMVYLPHVARALGLSAYIPLKGMEVVGGTTILSQHEVGQLTATLQGWCPGNPNTMQLLYRASRDGWSPYPFHASCGNNSPNTITLLRVGASASIVGGFSSVPWSPHAFGGDSVMSSLGAFIFMLKDSDMGGPNSFQPVKWRKRDNNGGYDVVVGASRGPYFGRTDLVVNFS-YIPVTLQAQPYSYDVPSGSTFPNLNGQTITEIEVFQVYSAAASTSSPSKRLKIQGPEGIHGAVSTSSTNTTSREANSDTGTFGNAIAGALMEERIALHQAEAELEQAHSKAVASGDALAAVYGPEVARGAIDTVVELSVRGTRMTTIRSTLQACRESALAALFNEDKWPATDKDVDEQGRRLINCSPAVFQKVLDVLRMRKRAAWAASDRDLARVRVDPADRPAFDSFVNMYFPGFENFITDMVVPQGSAQSG 1939
            MEA LSQRRKEMS AWEDVDRGWHELNQCR+DAGITKPSGSQ+GMLRLNVGGSHLNFRRC+L G+KEPSATWALGNLFE+VWDDRLPRDSDGRIVLDESPACVKHLIHSLIESSGAAPGSLPRG+TLA DEMVYLP+VARALGLSAYIP +GMEVVGGTT LS  EVG+LTATLQGWCPGNPNTM+LLYRASRDGWSPYPFHASCGNNSPNTITLLRVGAS SIVGGFSSVPWSPHA+GGDS+MSSLGAFIFMLKDSDMGGPNSFQPVKW KRDNNGG DVVVGASRGPYFGRTDLVVNF+ Y PVTLQAQPYSYDVPSGSTFPNLNGQTITEIEVFQVYSAAA+TSSPSKRLKIQGPE  HGAVSTSSTNT SREANSD  TFGNAIAGALMEERIALHQAEAELEQAHSKA ASGDALAAVYGPEVARGAIDTVVELSVRGTRMTT+RSTLQACRESALAALFNEDKWP TDKDVDEQGRRLINCSPAVFQKVLDVLRMRKRAAWAASDR+LA VRVD ADRPAFDSFVNMYFPGFENFITDMVVPQGSA+SG
Sbjct:    1 MEAVLSQRRKEMSQAWEDVDRGWHELNQCRIDAGITKPSGSQQGMLRLNVGGSHLNFRRCILAGRKEPSATWALGNLFESVWDDRLPRDSDGRIVLDESPACVKHLIHSLIESSGAAPGSLPRGDTLALDEMVYLPYVARALGLSAYIPRQGMEVVGGTTSLSHCEVGELTATLQGWCPGNPNTMRLLYRASRDGWSPYPFHASCGNNSPNTITLLRVGASQSIVGGFSSVPWSPHAYGGDSIMSSLGAFIFMLKDSDMGGPNSFQPVKWGKRDNNGGCDVVVGASRGPYFGRTDLVVNFNNYFPVTLQAQPYSYDVPSGSTFPNLNGQTITEIEVFQVYSAAATTSSPSKRLKIQGPEDTHGAVSTSSTNTASREANSDAETFGNAIAGALMEERIALHQAEAELEQAHSKAAASGDALAAVYGPEVARGAIDTVVELSVRGTRMTTLRSTLQACRESALAALFNEDKWPPTDKDVDEQGRRLINCSPAVFQKVLDVLRMRKRAAWAASDRELAHVRVDAADRPAFDSFVNMYFPGFENFITDMVVPQGSARSG 555          
BLAST of mRNA_Ecto-sp13_S_contig871.20176.1 vs. uniprot
Match: A0A6H5L232_9PHAE (TLDc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L232_9PHAE)

HSP 1 Score: 975 bits (2521), Expect = 0.000e+0
Identity = 493/579 (85.15%), Postives = 510/579 (88.08%), Query Frame = 2
Query:  212 MSRCHMNENDTFSATVKAYSKEMEAALSQRRKEMSHAWEDVDRGWHELNQCRVDAGITKPSGSQEGMLRLNVGGSHLNFRRCVLDGKKEPSATWALGNLFENVWDDRLPRDSDGRIVLDESPACVKHLIHSLIESSGAAPGSLPRGETLAPDEMVYLPHVARALGLSAYIPLKGMEVVGGTTILSQHEVGQLTATLQGWCPGNPNTMQLLYRASRDGWSPYPFHASCGNNSPNTITLLRVGASASIVGGFSSVPWSPHAFGGDSVMSSLGAFIFMLKDSDMGGPNSFQPVKWRKRDNNGGYDVVVGASRGPYFGRTDLVVNFSYIPVTLQAQPYSYDVPSGSTFPNLNGQTITEIEVFQVYSAAASTSSPSKRLKIQGPEGIHGAVSTSSTNTTSREANSDTGTFGNAIAGALMEERIALHQAEAELEQAHSKAVASGDALAAVYGPEVARGAIDTVVELSVRGTRMTTIRSTLQACRESALAALFNEDKWPATDKDVDEQGRRLINCSPAVFQKVLDVLRMRKRAAWAASDRDLARVRVDPADRPAFDSFVNMYFPGFENFITDMVVPQGSAQSG*CT 1948
            MSRCHMNE+DTFSATV AYSKEMEAAL QRRK MS AWEDV+RGWHELNQCR+DAGITKP GSQEGMLRLNVGGSHL FRRCVLDGKKEPSATWALGNLFE+VWDDRLPRDSDGRIVLD+SPACVK LIHSLIESSGAAPGSLPRGETLAPDEM YLPHVARALGLSAYIPL+GMEVVGGTTILS  EVG+LTATLQGWCPGNPNTMQLLYRASRD WSPYPFHASCGNNSPNTITLLRVGASASIVGGFSSVPWSPHA+GGDSVMSSLGAFIFMLKDSDMGGPNSFQPVKW KRDNNGGYDVVVGASRGP+FGRTDLVVNF+Y+PVTLQAQPYSYDVPS   FPNLNGQTITEIEVFQV                                              NAIAGALMEERIAL+QAEAELE AHSKA  SG ALAAVYGPEVARGAIDTVVELSVRGTRMTT+RSTL+ACRESALAALFNEDKWPATDKDVDEQGRRLINCSPAVFQKVLDVLRMRKRAAWAASDR+ A VRVD ADRPAFDSFVNM+FPGFENFITDMVVPQGSA+SG CT
Sbjct:    1 MSRCHMNEDDTFSATVTAYSKEMEAALGQRRKGMSQAWEDVERGWHELNQCRIDAGITKPFGSQEGMLRLNVGGSHLRFRRCVLDGKKEPSATWALGNLFESVWDDRLPRDSDGRIVLDKSPACVKDLIHSLIESSGAAPGSLPRGETLAPDEMAYLPHVARALGLSAYIPLQGMEVVGGTTILSHCEVGELTATLQGWCPGNPNTMQLLYRASRDDWSPYPFHASCGNNSPNTITLLRVGASASIVGGFSSVPWSPHAYGGDSVMSSLGAFIFMLKDSDMGGPNSFQPVKWSKRDNNGGYDVVVGASRGPFFGRTDLVVNFTYVPVTLQAQPYSYDVPSVPAFPNLNGQTITEIEVFQV-------------------------------------------NICNAIAGALMEERIALYQAEAELEHAHSKAAVSGRALAAVYGPEVARGAIDTVVELSVRGTRMTTLRSTLRACRESALAALFNEDKWPATDKDVDEQGRRLINCSPAVFQKVLDVLRMRKRAAWAASDRESAHVRVDAADRPAFDSFVNMFFPGFENFITDMVVPQGSARSGQCT 536          
BLAST of mRNA_Ecto-sp13_S_contig871.20176.1 vs. uniprot
Match: A0A6H5LAP0_9PHAE (TLDc domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LAP0_9PHAE)

HSP 1 Score: 499 bits (1284), Expect = 1.080e-161
Identity = 288/579 (49.74%), Postives = 366/579 (63.21%), Query Frame = 2
Query:  212 MSRCHMNENDTFSATVKAYSKEMEAALSQRRKEMSHAWEDVDRGWHELNQCRVDAGITKPSGSQEGMLRLNVGGSHLNFRRCVLD--GKKEPSATWALGNLFENVWDDRLPRDSDGRIVLDESPACVKHLIHSLIESSGAAPGSLPRGETLAPDEMVYLPH-VARALGLSAYIPLKGMEVVGGTTILSQHEVGQLTATLQGWCPGNPNTMQLLYRASRDGWSPYPFHASCGNNSPNTITLLRV-----GASASIVGGFSSVPWSP----HAFGGDSVMSSLGAFIFMLKDSDMGGPNSFQPVKWRKRDNNGGYDVVVGASRGPYFGRTDLVVNFSYIPVTLQAQPYSYDVPSGSTFPNLNGQTITEIEVFQVYSAAASTSSPSKRLKIQGPEGIHGAVSTSSTNTTSREANSDTGTFGNAIAGALMEERIALHQAEAELEQAHSKAVASGDALAAVYGPEVARGAIDTVVELSVRGTRMTTIRSTLQACRESALAALFNEDKWPATDKDVDEQGRRLINCSPAVFQKVLDVLRMRKRAAWAASDR----DLARVRVDPADRPAFDSFVNMYFPGFENFI 1900
            M RC  NE  TFSAT+   S+ MEAALSQRR EM H W+ +D GW  L +   + GITKP  S+EG+++LNVGG  L FRR VLD  GK++P  TWALGNLFE  WD R+PRDSDG IVLDESP CVK L+H L+ +S ++  ++ R    A +E   L H  A  LGLS  +   GM + GGTTI   HE  +LTA +Q WCPG+P  ++LLYRASRDGW+   F+A C  +SP+T+TLLRV     G + SI+GGFSSVPWSP    +++G   +  S GAF+F+LKD   G  ++F P+KW  +  NG     V    GP FG  DL VN++    T+     +YDVP+GS F  LNG+ + +IE F+V       S P+  L +   E  H A   ++T T     + D  TFG  IA +LME  + L  A  EL  A ++  A   ALAAVYGP+VA G  + VVELSVRGT MTT+RSTL+ C +SALAA F+E KWPA  KD+D  GRR+I+C PAVF KVLDVLR+ KRAAWA  +        RV + P DR AF+ FV+MYF G E+FI
Sbjct:    1 MLRCQSNEKKTFSATLAVSSRAMEAALSQRRLEMDHEWDSIDEGWQTLRERMTEVGITKPLESKEGIVKLNVGGLLLAFRRSVLDSEGKQQPP-TWALGNLFEAEWDKRVPRDSDGHIVLDESPTCVKQLVHRLLTASSSSKATVGRAGDFARNEDPALLHYTAGVLGLSGCLAPVGMSIQGGTTIFEPHETSKLTAVVQDWCPGHPGGLELLYRASRDGWNGATFNARCKGDSPSTVTLLRVKGCETGGTDSIIGGFSSVPWSPAIQNYSYG-YYLRGSPGAFVFILKDEGKGS-STFPPMKWGVK--NGLAAKAVNQGCGPCFGECDLKVNWNGNMSTVGTDNSTYDVPAGSHFLQLNGRHLLDIEAFRV------CSKPTHTLPLAKQE--HRAGEGTNTPTAPVRTSDDVPTFGQLIADSLMEAEMVLQDAGIELALAKARTTACATALAAVYGPDVASGQQEDVVELSVRGTAMTTLRSTLRVCPDSALAARFDEGKWPAAKKDLDSDGRRMIDCRPAVFSKVLDVLRIAKRAAWAGGENLQGMKETRVTIKPGDRVAFEEFVDMYFKGCESFI 566          
BLAST of mRNA_Ecto-sp13_S_contig871.20176.1 vs. uniprot
Match: D7FIV0_ECTSI (TLDc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIV0_ECTSI)

HSP 1 Score: 395 bits (1014), Expect = 2.010e-122
Identity = 258/557 (46.32%), Postives = 325/557 (58.35%), Query Frame = 2
Query:  311 MSHAWEDVDRGWHELNQCRVDAGITKPSGSQEGMLRLNVGGSHLNFRRCVLDGKKEPSA-TWALGNLFEN-VWDDRLPRDSDGRIVLDESPACVKHLIHSLIESSGAAPGSLPRGETLAPDEMVYLPHVARALGLSAYIPLKGMEVVGGTTILSQHEVGQLTATLQGWCPGNPNTMQLLYRASRDGWSPYPFHASCGNNSPNTITLLRV-----GASASIVGGFSSVPWS---PHAFGGDSVMSSLGAFIFMLKDSDMGGPNSFQPVKWRKRDNN----GGYDVVVGASRGPYFGRTDLV-VNFSYIPVTLQAQPYSYDVPSGSTFPNLNGQTITEIEVFQVYSAAASTSSPSKRLKIQGPEGIHGAVSTSSTNTTSREANSDTGTFGNAIAGALMEERIALHQAEAELEQAHSKAVASGDALAAVYGPEVARGAIDTVVELSVRGTR----MTTIRSTLQACRESALAALFNEDKWPATDKDVDEQGRRLI-NCSPAVFQKVLDVLRMRKRAAWAASDRDLAR---VRVDPADRPAFDSFVNMYFPGFENFITDMV 1912
            M   W+ +D GW  L     + G++  S  Q  ++RLNVGG  +N  R VL    E S+ TW LG+LFE  VWD RLPR  DGRIVLDESP CV+ L   L ++S   PG+         DE  Y+  VA ALGL       GM V GG+T L   E  +LTAT+ GWCPG P  ++LLYRASRDGWS    HA CG++SP+TI+L RV       S SIVGGFSSVPW+   P   G DS       F+F+LKD  +   ++FQP  W  R  N    G YD+      G  FGR  +  ++  +   TL A    Y VP G  F  L G+ I ++EVF+V     +   P+    + G   I  A    ++  ++ E  +D   FG +IAG+L +ER ALH A+ EL QA++ A AS  ALAAVYGP  A G  D +VELSVRG+R    MTT+ STLQAC ESALAA F+E KWP T+KD D  GRR++ +CSP+VF KVLDVLRM+KR AWA  D  +     V +  ADR  F+ FVNMYFPG E+FI D V
Sbjct:    1 MKKEWDKLDSGWEALESKMNETGMSMVSSIQPSIVRLNVGGLDVNIARSVLRKAGESSSSTWTLGDLFEGCVWDKRLPRCEDGRIVLDESPVCVEEL---LCDASSKRPGN----SNFPDDEKPYIGGVASALGLDL-----GMTVPGGSTTLPHDEAERLTATILGWCPGRPEGLELLYRASRDGWSGDALHARCGDDSPSTISLFRVKTQDANTSDSIVGGFSSVPWTALPPENRGLDS-------FLFILKDG-IEESHNFQPAIWGLRIRNPKPSGAYDME---KFGLIFGRGRIFDLSVVWTNQTLVAGNQVYAVPPGFQFIRLGGRAIADVEVFRVRQTMGTL--PTTPPTVTGL--IDCAAYFEASAMSAEEHENDVYRFGTSIAGSLKDERAALHTAQRELVQANTMAAASLKALAAVYGPHTAAGVKDPIVELSVRGSRTTERMTTLLSTLQACPESALAARFDEAKWPVTEKDKDAHGRRVMKDCSPSVFSKVLDVLRMKKREAWAGDDGKMGAAVLVAIKDADRAPFEEFVNMYFPGCESFIMDSV 530          
BLAST of mRNA_Ecto-sp13_S_contig871.20176.1 vs. uniprot
Match: D7FIX7_ECTSI (BTB_2 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIX7_ECTSI)

HSP 1 Score: 387 bits (993), Expect = 1.480e-119
Identity = 243/573 (42.41%), Postives = 323/573 (56.37%), Query Frame = 2
Query:  257 VKAYSKEMEAALSQRRKEMSHAWEDVDRGWHELNQCRVDAGITKPSGSQEGMLRLNVGGSHLNFRRCVLDGKKEPSATWALGNLFENVWDDRLPRDSDGRIVLDESPACVKHLIHSLIESSGAAPGSLPRGETLAPDEMVYL-PHVARALGLSAYIPLKGMEVVGGTTILSQHEVGQLTATLQGWCPGNPNTMQLLYRASRDGWSPYPFHASCGN-NSPNTITLLRV---GASAS--IVGGFSSVPWSPHAFGGDS--VMSSLGAFIFMLKDSDMGGPNSFQPVKWRKRDNNGGYDVVVGASRGPYFGR-TDLVVNFSYIPVTLQAQPYSYDVPSGSTFPNLNGQTITEIEVFQVYSAAASTSSPSKRLK--IQGPEGIHGAVSTSSTNTTSREANSDTGTFGNAIAGALMEERIALHQAEAELEQAHSKAVASGDALAAVYGPEVARGAIDTVVELSVRGTRMTTIRSTLQACRESALAALFNEDKWPATDKDVDEQGRRLINCSPAVFQKVLDVLRMRKRAAWAASD---------RDLARVRVDPADRPAFDSFVNMYFPGFENFITDMV 1912
            ++A ++  EAALSQRR+EM  AW+D D+GW EL      A +T+  G Q                         PS+TWALG+LFE  WD R+PRD+DGRIVLDESP CVKHLI +L+    AA G+      ++ D+   L  H AR LGLS  +   GM + GGTT    HE  +LTA +Q WCPGNP        A +D          CG+ +SP TIT LRV   GA+A+  I+GGFSS+PW    +  D+     S GAF+FMLKD +      +Q  KW  +D    Y V  G   GP FG   DL V ++     ++    +Y  P+GS FP LNG  + ++E F+V     + +S +K+    ++   G    V T+           D  +FG+ +A +LMEE   L +A  EL  A ++ +A   A+AAVYGPEVA G  D VVEL+VRGTRMTT+RSTL+ C +SALAA FNE++WP  +KD+D  GRR+I+C P+VF KVLDVLR+ KRAAWA S+         R   RV +   D  AF+ FV+MYFP  E F+ + V
Sbjct:    1 MEASARATEAALSQRRREMDQAWDDTDQGWQELQ-----AHMTEGKGEQ-------------------------PSSTWALGDLFEAEWDKRVPRDADGRIVLDESPICVKHLIEALLLRPNAANGTATGEADMSRDDQPDLFHHTARVLGLSGQLAPVGMTIKGGTTTFDPHEASKLTAVVQRWCPGNPGA------ACQD---------RCGDQSSPTTITFLRVKGRGAAATDCIIGGFSSIPWDDFMYDSDAGYYSPSPGAFLFMLKDGEGRHSGVYQSTKWGVKDGRSAYAVYRGQGYGPCFGEGRDLHVVWNGTESAVRTGNQTYHAPTGSPFPELNGCRLVDVETFRVGPKPNTPTSSTKQEDHAVEDKTGPGAPVKTAD----------DVRSFGDLVADSLMEEEKLLQEAANELSLAKARTMACATAVAAVYGPEVATGTEDDVVELNVRGTRMTTLRSTLRICPDSALAAWFNEEQWPVAEKDLDSNGRRIIDCKPSVFSKVLDVLRIAKRAAWARSEEGPVRNEKRRVKPRVTIKAGDCAAFEEFVDMYFPCCETFMMEHV 518          
BLAST of mRNA_Ecto-sp13_S_contig871.20176.1 vs. uniprot
Match: A0A6H5JCR8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCR8_9PHAE)

HSP 1 Score: 336 bits (862), Expect = 1.700e-100
Identity = 237/584 (40.58%), Postives = 313/584 (53.60%), Query Frame = 2
Query:  212 MSRCHMNENDTFSATVKAYSKEMEAALSQRRKEMSHAWEDVDRGWHELNQCRVDAGITKPSGSQEGMLRLNVGGSHLNFRRCVLDGKK-EPSATWALGNLFEN-VWDDRLPRDSDGRIVLDESPACVKHLIHSLIESSGAAPGSLPRGETLAPDEMVYLPHVARALGLSAYIPLKGMEVVGGTTILSQHEVGQLTATLQGWCPGNPNTMQLLYRASRDGWSPYPFHASCGNNSPNTITLLRVGA-----SASIVGGFSSVPW--SPHAFGGDSVMSSLGAFIFMLKDSDMGGPNSFQPVKWRKRDNNGGYDVVVGASRGPYFGRTDLVVNFSYIPVTLQAQPYSYDVPSGSTFPNLNGQTITEIEVFQVYSAAASTSSPSKRLKIQGPEGIHGAVSTSSTNTTSREANSDTGTFGNAIAGALMEERIALHQAEAELEQAHSKAVASGDALAAVYGPEVARGAIDTVVELSVRGTR----MTTIRSTLQACRESALAALFNEDKWPATDKDVDEQGRRLI-NCSPAVFQKVLDVLRMRKRAAWAASDRDLAR---VRVDPADRPAFDSFVNMYFPGFENFITDMV 1912
            M R H NE++ F    K +++E+E  L  R KE    W+ +D GW  L     + G++  S     ++RL+VGG  +N    VL  K    S++W LG+LF+  VWD RLP   DGRIVLDESP CV+ ++     S  +   +LP       DE  Y+ +VA ALGL                         L   +  W            RASRD WS + FHA CG++SP+TI+L  V A     S S+VG FS VPW  SP       V+ S G+F+FMLKD + G  ++ QP KW  +    G  VV G + GP     D V+    +          YD+P+   F    G+ + +IEVF+V   +         L + G   I  A     ++ ++ E  +D   FG +IAG+L +ER ALH A+ EL +A++ A AS +ALAAVYGP +A G  D VVELSVRG R    MTT+ STLQAC ESALAA F+E KWP TDK+ D  GRR+I +CSP VF KVLDVLRM+KR AWA  D+ +     V +  ADR  F+ FVNMYFP  E+FI D V
Sbjct:    1 MFRHHPNEHECFLTATKTHAQELEELLEDRAKETKKEWDKLDSGWEALEFKMNETGMSTVSSFHPSIVRLDVGGLDVNIAWSVLREKVVASSSSWTLGDLFKGGVWDKRLPSPEDGRIVLDESPVCVEEILSDGASSKRSGSNNLPD------DEKPYIGYVASALGLG------------------------LQPGMVSW---------QADRASRDSWSDHAFHARCGDDSPSTISLFCVEAQGANNSDSVVGRFSVVPWTASPEF---SPVLPSPGSFLFMLKDGNEGS-DAVQPSKWGPKVGYTG-QVVDGRTEGP----VDWVMCLHRM---FTVHCGIYDIPTEHPFLYHMGREVVDIEVFRVLPTS---------LTVTGL--IDCAAYFKCSDMSAEEHENDVYRFGMSIAGSLRDERAALHTAQRELVKANTIAAASVEALAAVYGPNIAAGVEDRVVELSVRGPRKTERMTTLLSTLQACPESALAARFDEAKWPVTDKEKDAHGRRVIKDCSPLVFAKVLDVLRMKKREAWADDDKKVRAAVLVAIKAADRAPFEKFVNMYFPACESFIMDSV 522          
BLAST of mRNA_Ecto-sp13_S_contig871.20176.1 vs. uniprot
Match: D7FR77_ECTSI (TLDc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FR77_ECTSI)

HSP 1 Score: 328 bits (842), Expect = 1.760e-97
Identity = 222/565 (39.29%), Postives = 298/565 (52.74%), Query Frame = 2
Query:  311 MSHAWEDVDRGWHELNQCRVDAGITKPSGSQEGMLRLNVGGSHLNFRRCVLDGKKEPSATWALGNLFENVWDDRLPRDSDGRIVLDESPACVKHLIHSLIESSGAAPGSLPRGETLAPDEMVYLPHVARALGLS--AYIPLKGMEVVGGTTILSQHEVGQLTATLQGWCPGNPNTMQLLYRASRDGWSPYPFHASCGNNSPNTITLLRV-------GASASIVGGFSSVPWSPHAFGGDSVMSSLGAFIFMLKDSDMGGPNSFQPVKWRKRDN---NGGYDVVVGASRGPYFGRTDLVV--------------NFSYIPVTLQAQPYSYDVPSGSTFPNLNGQTITEIEVFQVYSAAASTSSPSKRLKIQGPEGIHGAVSTSSTNTTSREANSDTGTFGNAIAGALMEERIALHQAEAELEQAHSKAVASGDALAAVYGPEVARGAIDTVVELSVRG----TRMTTIRSTLQACRESALAALFNEDKWPATDKDVDEQGRRLI-NCSPAVFQKVLDVLRMRKRAAWAASDRDLARVRVDPADRPAFDSFVNMYFPGFENFITDMV 1912
            M   WE+V  G  +L Q   ++G+ + S  ++  L LNVGGS+++  R  L      S  W L NLF++ WD+RLPRD++G +VLDESP C KHL+ +L             G  L  DE  YLP+V+ ALG+   A +P + ++  G   +    E+ +L  T+  WCPGNP  + LLYRASRDGW    FHA CG++SP T+TL R+       G + S++G FSSVPW+P + G   + SS G F+F+L D    G  SF+P K +   +    G   VV+G    P F   DL V              N  Y    L     ++ VP G +F   +G  + EIEV++V+SA                                 E + D   FG +IA +  EE  ALH+A+++L +A  K  AS  ALAAVYGP VA  + D VV+ SVRG    TR+TT+RSTLQ C    L A  ++ KW    ++ D+ GR LI +CSPAVF KVLDVLRM+KRA W   +   A V V   DR AF+  V MYFPG E  I D V
Sbjct:    1 MKKEWEEVAEGRQKLEQLETESGMLR-STFEDDTLTLNVGGSNVDISRADLQRLPALSEAWKLANLFDSDWDERLPRDANGLMVLDESPVCFKHLVDAL-------------GGVLPTDEQAYLPYVSNALGVPSPARVPRRRVDSEGSAMLGIGGELDRLARTVLDWCPGNPERLDLLYRASRDGWDTRHFHARCGDDSPMTVTLYRLNDASNRKGLNCSVLGCFSSVPWTPPSDGYTKLKSSPGGFVFILTD----GSRSFRPTKLKVHPHYAKRGCGLVVLGEGSMPSF-HVDLEVFHGKERHRSCTSGTNAKY---RLWTDSGAFYVPEGCSFLKYDGIDVAEIEVYRVWSAE-------------------------------EERSDDIHRFGGSIAASFEEEHKALHKAQSKLVEATEKGAASASALAAVYGPGVASNSRDPVVDFSVRGSRTTTRITTLRSTLQLC--PYLVARLDQSKWT---ENKDKHGRWLIKDCSPAVFSKVLDVLRMKKRAGWIGGEVK-AHVVVKATDREAFEQAVGMYFPGCERVILDHV 506          
BLAST of mRNA_Ecto-sp13_S_contig871.20176.1 vs. uniprot
Match: D7G141_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G141_ECTSI)

HSP 1 Score: 328 bits (842), Expect = 1.530e-95
Identity = 232/645 (35.97%), Postives = 318/645 (49.30%), Query Frame = 2
Query:  212 MSRCHMNENDTFSATVKAYSKEMEAALSQRRKEMSHAWEDVDRGWHELNQCRVDAGITKPSGSQEGMLRLNVGGSHLNFRRCVLDGKKEPSATWALGNLFENVWDDRLPRDSDGRIVLDESPACVKHLIHSLIES----------------SGAAPGSLPRGETLAPDEMVYLPHVARALGLSAYIPL----KGMEVVGGTTILSQHEVGQLTATLQGWCPGNPNTMQLLYRASRDGWSPYPFHASCGNNSPNTITLLRV----GASASIVGGFSSVPWSPHAFGGDSV-MSSLGAFIFMLKDSDMGGPNSFQPVKWRKRDNNGGYDV----VVGASRGPYFGRTDLVVNFSYIP-------VTLQAQPYSYDVPSGSTFPNLNGQTITEIEVFQVYSAAA---------------STSSPSKRLKIQGPEGIHGAVSTSSTNTTSREANSDTGTFGNAIAGALMEERIALHQAEAELEQAHSKAVASGDALAAVYGPEVARGAID--TVVELSVRGTRMTTIRSTLQACRESALAALFNEDKWPA---TDKDVDEQG---------RRLINCSPAVFQKVLDVLRMRKRAAWAASDRDLARVR-----------VDPADRPAFDSFVNMYFPGFENFITDMVVP 1918
            M R H  + D F  T  A  K++ AAL      M   W D++ GW    Q  VD G+ +P+   EG+LRLN+GG   N  R ++  + E      LG LFE +WD+R+PRD DGRIVLDESPACVKH+IH+L+                  S A P +      +A  E  YL +++  LGLS  IP     KGM V GGTT  +  ++ Q ++ L+ WCPG+P  + LLYRASRDG+S  PF   C      TITL+RV    G   S+VGGFS +   P   G ++    S  AF+F+L     G P +    KW  ++      +          GP FG  D+ V FS           TL      YDV   S F  L+G+ + EIE+F+V   A                S   P KR     P+     +  +               FG+++A  LMEE++AL  A+ ELE+A  +A A+  ALA VYGP VA   ++   VVELSVRG  +TT+RSTL+AC +SA +        P     D + +++G         RR ++C P+ F K+LDV+RMRKRAAW   D+  A +R           V  +DR  F + V+  FP  E+F+ DM+ P
Sbjct:    1 MLRRHFKQRDAFRETASAQIKQLNAALDLAISAMDEPWRDLENGWERHQQYLVDVGV-RPTTGNEGVLRLNIGGVPANVHRSLI-AEAEGFKGSVLGALFEQMWDERVPRDMDGRIVLDESPACVKHIIHTLLRGGCTTRTKETASLCHFRSAAGPSA-----AVAAHEEPYLLYISHVLGLSNVIPACPNTKGMVVAGGTTTANPLQLPQWSSLLRSWCPGDPAGLHLLYRASRDGFSTGPFQ-QCVRGVCETITLIRVKSDDGRPDSVVGGFSDIEIVPQEVGMETGNQRSSSAFLFLLDSPGGGFPTA---KKWSIKEGEDSCAIHWPETADVCAGPAFGLEDMCVTFSESEGQSGSSGCTLSTGGEFYDVDEDSPFVGLDGKEVAEIEIFRVDKTARVEHQDVAPVATTPPQSNIFPDKRKHFLHPDRSADEIEAAYALQ-----------FGSSLAELLMEEQMALAYAQTELEEAKKRAAATARALAIVYGPGVASARVEENAVVELSVRGMSVTTLRSTLEACPDSAFSTWLGAADRPVGCGDDGEANDEGLGGRTSEDCRRKVDCDPSCFSKILDVMRMRKRAAWVTDDQQGALIREAGGGHTVRIPVPESDRACFKNLVHTLFPECEDFVMDMIEP 623          
BLAST of mRNA_Ecto-sp13_S_contig871.20176.1 vs. uniprot
Match: A0A6H5JD55_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD55_9PHAE)

HSP 1 Score: 295 bits (755), Expect = 5.640e-86
Identity = 206/531 (38.79%), Postives = 271/531 (51.04%), Query Frame = 2
Query:  368 VDAGITKPSGSQEGMLRLNVGGSHLNFRRCVLDGKKEPSA-TWALGNLFENVWDDRLPRDSDGRIVLDESPACVKHLIHSLIESSGAAPGSLPRGETLAPDEMVYLPHVARALGLSAYIPLKGMEVVGGTTILSQHEVGQLTATLQGWCPGNPNTMQLLYRASRDGWSPYPFHASCGNNSPNTITLLRVGASASIVGGFSSVPWSPHAFGGDSVMSSLGAFIFMLKDSDMGGPNSFQPVKWRKRDNNGGYDVVVGASRGPYFGRTDLVVNFSY-IPVTLQAQPYSYDVPSGSTFPNLNGQTITEIEVFQVYSAAASTSSPSKRLKIQGPEGIHGAVSTSSTNTTSREANSDTGTFGNAIAGALMEERIALHQAEAELEQAHSKAVASGDALAAVYGPEVARGAIDT-VVELSVRGTRMTTIRSTLQACRESALAALFNEDKWPATDKDVDEQGRRLINCSPAVFQKVLDVLRMRKRAAWAASDRD-----LARVRVDPADRPAFDSFVNMYFPGFENFITDMVVPQGSAQS 1936
             + GITKPS S+EGM+ LNVGGS L F R VL+GK E    TWALG L E  WD R+PRDSDGRIVLDESP C +  +    E    AP   P        E++Y  + AR LGL        M + GG  IL  HE  +LTA +QGWCPG+P  ++LLYRASRDGWS   F   C + SP+TI+L                P+S      D         +F +                           +V  S  P  G  DL V +      T+Q +  + DV + S    LNG+ + +IE F++     + +  S + K        G ++  +    SR        FG  IA ALMEE I L +A  EL  A ++  A   AL  VYGP+VA+G  +  VVELSV GTR+T + STL+ C  S  A  F ED+WPAT KD+D+ GRR+I+C P+VF KV+D+L    RA+WA  D D       RV + P DR  F+ FV++YF G E+ I + V   G  ++
Sbjct:    6 TEVGITKPSRSKEGMVMLNVGGSRLTFHRSVLEGKGEQQGLTWALGTLCEAEWDKRVPRDSDGRIVLDESPTCPR--VWGAREEHDLAPDDKP--------ELLY--YTARVLGLRGQSAPFDMPMRGGPNILEPHETKRLTAIVQGWCPGHPGGLELLYRASRDGWSARSFDDKCRDGSPSTISL----------------PFSGFESRAD---------LFTIS-------------------------TIVLFSAAPGNGMCDLRVVWKVGAASTVQTKNLTQDVQAESRLLALNGRGVVDIETFRLCYCRPTDALSSAKPKHH----FIGDIAVPTAPVRSRLLRMSF-PFGRLIADALMEE-IVLQEANNELAVAEARTTACATALVVVYGPDVAKGREEEDVVELSVCGTRVTRMCSTLRVCPGSTFATQFLEDRWPATKKDLDDNGRRVIDCEPSVFSKVMDIL----RASWARGDDDQEANKTPRVTIKPCDRAEFEEFVDIYFKGCESLIMEYVESLGDEEA 464          
BLAST of mRNA_Ecto-sp13_S_contig871.20176.1 vs. uniprot
Match: D7FIY4_ECTSI (TLDc domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIY4_ECTSI)

HSP 1 Score: 278 bits (710), Expect = 6.530e-81
Identity = 146/285 (51.23%), Postives = 184/285 (64.56%), Query Frame = 2
Query:  212 MSRCHMNENDTFSATVKAYSKEMEAALSQRRKEMSHAWEDVDRGWHELNQCRVDAGITKPSGSQEGMLRLNVGGSHLNFRRCVLDGKKEPSATWALGNLFENVWDDRLPRDSDGRIVLDESPACVKHLIHSLIESSGAAPGSLPRGETLAPDEMV-YLPHVARALGLSAYIPLKGMEVVGGTTILSQHEVGQLTATLQGWCPGNPNTMQLLYRASRDGWSPYPFHASCGNNSPNTITLLRV-----GASASIVGGFSSVPWSPHAFGGDSVMSSLGAFIFMLKDS 1048
            M R   NE  TFS  ++A ++E    LSQRRK M  AW D+D GW  L +     GITKP   +EG+++LNVGGS L FRR V +GK +  AT ALG+L E  WD R+PRDSDGRIVLDESP CVK L H L+     A G++ R +  A DE    L + A  LGLS ++   GM + GGTTI   HE  +LTA +QGWCPG+P  ++LLYRASRDGW+   F A+CG++ P+T+T  RV     G + SIVGGFSSVPW+P   G     +S GAF+FMLKD+
Sbjct:   65 MLRFQSNEQKTFSEILEASARETNDILSQRRKVMDQAWADIDEGWQALQEHMAKIGITKPLDLKEGLVKLNVGGSLLAFRRSVFEGKGK-GATSALGSLCEAEWDKRIPRDSDGRIVLDESPTCVKRLFHDLLTPPSLAKGTVVREDNFASDETPDLLRYTAHVLGLSWHLAPIGMSITGGTTIFEPHEASRLTAVIQGWCPGHPGRLELLYRASRDGWNSAAFQATCGDDRPSTVTFFRVKGQGTGGTDSIVGGFSSVPWTPPG-GSTGYTASPGAFLFMLKDA 347          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig871.20176.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G2H5_ECTSI0.000e+092.97TLDc domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5L232_9PHAE0.000e+085.15TLDc domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A6H5LAP0_9PHAE1.080e-16149.74TLDc domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FIV0_ECTSI2.010e-12246.32TLDc domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7FIX7_ECTSI1.480e-11942.41BTB_2 domain-containing protein n=1 Tax=Ectocarpus... [more]
A0A6H5JCR8_9PHAE1.700e-10040.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FR77_ECTSI1.760e-9739.29TLDc domain-containing protein n=1 Tax=Ectocarpus ... [more]
D7G141_ECTSI1.530e-9535.97Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JD55_9PHAE5.640e-8638.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FIY4_ECTSI6.530e-8151.23TLDc domain-containing protein n=1 Tax=Ectocarpus ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig871contigEcto-sp13_S_contig871:48..3680 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score119.4
Seed ortholog evalue5.5e-24
Seed eggNOG ortholog35128.Thaps11039
Model size3194
KEGG rclassRC00002,RC00078
KEGG koko:K00849
KEGG ReactionR01092
KEGG Pathwayko00052,ko00520,ko01100,map00052,map00520,map01100
KEGG ModuleM00554,M00632
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.Sterile alpha motif.
EggNOG OGs2XF76@2836,KOG2723@1,KOG2723@2759
Ec32 ortholog descriptionBTB/POZ fold
Ec32 orthologEc-07_005510.1
EC2.7.1.6
Cds size1731
COG Functional cat.S
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464143.9710288-UTR-Ecto-sp13_S_contig871:47..2581681464143.9710288-UTR-Ecto-sp13_S_contig871:47..258Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig871 48..258 +
1681464143.997375-UTR-Ecto-sp13_S_contig871:1989..20151681464143.997375-UTR-Ecto-sp13_S_contig871:1989..2015Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig871 1990..2015 +
1681464144.0069149-UTR-Ecto-sp13_S_contig871:2279..34181681464144.0069149-UTR-Ecto-sp13_S_contig871:2279..3418Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig871 2280..3418 +
1681464144.016465-UTR-Ecto-sp13_S_contig871:3593..36801681464144.016465-UTR-Ecto-sp13_S_contig871:3593..3680Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig871 3594..3680 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464143.9847097-CDS-Ecto-sp13_S_contig871:258..19891681464143.9847097-CDS-Ecto-sp13_S_contig871:258..1989Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig871 259..1989 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig871.20176.1prot_Ecto-sp13_S_contig871.20176.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig871 259..1989 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig871.20176.1

>prot_Ecto-sp13_S_contig871.20176.1 ID=prot_Ecto-sp13_S_contig871.20176.1|Name=mRNA_Ecto-sp13_S_contig871.20176.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=577bp
MSRCHMNENDTFSATVKAYSKEMEAALSQRRKEMSHAWEDVDRGWHELNQ
CRVDAGITKPSGSQEGMLRLNVGGSHLNFRRCVLDGKKEPSATWALGNLF
ENVWDDRLPRDSDGRIVLDESPACVKHLIHSLIESSGAAPGSLPRGETLA
PDEMVYLPHVARALGLSAYIPLKGMEVVGGTTILSQHEVGQLTATLQGWC
PGNPNTMQLLYRASRDGWSPYPFHASCGNNSPNTITLLRVGASASIVGGF
SSVPWSPHAFGGDSVMSSLGAFIFMLKDSDMGGPNSFQPVKWRKRDNNGG
YDVVVGASRGPYFGRTDLVVNFSYIPVTLQAQPYSYDVPSGSTFPNLNGQ
TITEIEVFQVYSAAASTSSPSKRLKIQGPEGIHGAVSTSSTNTTSREANS
DTGTFGNAIAGALMEERIALHQAEAELEQAHSKAVASGDALAAVYGPEVA
RGAIDTVVELSVRGTRMTTIRSTLQACRESALAALFNEDKWPATDKDVDE
QGRRLINCSPAVFQKVLDVLRMRKRAAWAASDRDLARVRVDPADRPAFDS
FVNMYFPGFENFITDMVVPQGSAQSG*
back to top

mRNA from alignment at Ecto-sp13_S_contig871:48..3680+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig871.20176.1 ID=mRNA_Ecto-sp13_S_contig871.20176.1|Name=mRNA_Ecto-sp13_S_contig871.20176.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3633bp|location=Sequence derived from alignment at Ecto-sp13_S_contig871:48..3680+ (Ectocarpus species13 EcNAP12_S_4_19m)
ACGAGAGGGAGAGGGAGAGTAGCAAGGGCTACTGCAGGAGGAGGAACATC AATACAAAGTTGTAATCTTTAGACGTCCGTAGGCTCAGCCGCAGACCCGC CAAAGGGGGCCAATTTTTGCTTGAGTTCAGCCACTGCGCCCGCCTCGACT GCAGCAGGACTGCAGCAGGTGTGATCCATAATACACAGCAACAACAGGAG CGCAGTGCATCATGTCGCGTTGCCACATGAACGAGAATGATACATTCTCG GCGACAGTAAAAGCGTACTCCAAGGAAATGGAAGCAGCCCTCAGCCAGAG GCGGAAAGAGATGAGCCATGCCTGGGAAGACGTGGACCGGGGCTGGCACG AGCTCAACCAATGCAGAGTCGACGCCGGCATCACCAAACCCTCTGGCTCC CAGGAAGGGATGCTGAGGTTGAACGTGGGTGGCTCGCATCTGAACTTCCG TCGCTGCGTCCTTGATGGCAAGAAAGAACCGTCCGCTACCTGGGCCCTGG GCAACCTGTTTGAGAACGTGTGGGACGACCGCCTCCCGCGAGACAGCGAC GGACGGATCGTGCTGGACGAGTCCCCGGCTTGCGTCAAGCACCTCATTCA CTCGCTCATAGAGAGCTCGGGCGCGGCACCGGGCTCCCTACCCCGCGGTG AGACCTTAGCCCCAGACGAAATGGTGTACCTGCCCCATGTCGCCCGCGCT CTCGGGTTGTCGGCGTATATACCGCTCAAGGGTATGGAAGTAGTAGGCGG AACAACGATCCTCAGCCAGCATGAGGTTGGGCAACTGACGGCAACTCTTC AGGGCTGGTGCCCTGGTAACCCCAACACCATGCAACTGCTCTACCGCGCC TCTCGAGACGGCTGGAGTCCGTACCCATTTCATGCTAGTTGCGGGAACAA CAGCCCCAACACGATCACATTGCTGAGGGTTGGCGCCAGTGCAAGCATCG TTGGCGGCTTCTCGAGCGTGCCTTGGAGTCCTCACGCATTCGGTGGGGAT TCGGTTATGAGCTCTCTCGGGGCGTTCATATTCATGCTCAAAGATAGTGA TATGGGAGGGCCCAACAGCTTTCAGCCAGTGAAGTGGCGCAAAAGGGATA ACAACGGAGGATACGACGTGGTTGTTGGTGCCAGTCGCGGACCTTACTTT GGACGAACCGACTTGGTGGTCAACTTCAGCTACATTCCCGTAACTCTTCA GGCACAGCCGTACAGTTATGACGTCCCGTCAGGCTCAACGTTCCCTAATC TCAACGGACAAACTATCACGGAAATCGAGGTATTTCAAGTGTATTCAGCG GCAGCGAGTACATCGTCGCCCTCCAAACGCCTCAAGATTCAGGGCCCAGA AGGCATACATGGCGCTGTGAGCACGAGCTCTACGAACACGACCTCGCGGG AGGCAAACTCCGATACAGGAACATTTGGCAATGCAATCGCCGGCGCCCTC ATGGAGGAGCGAATCGCGTTGCACCAAGCGGAAGCCGAGCTCGAACAAGC ACACAGCAAAGCGGTGGCATCTGGCGACGCGTTGGCTGCGGTCTACGGTC CCGAGGTCGCACGCGGTGCCATCGATACGGTGGTGGAGCTCAGCGTGCGG GGGACCAGGATGACGACCATACGCTCGACTCTGCAGGCCTGCCGCGAGTC CGCCCTCGCCGCTTTGTTCAACGAGGACAAGTGGCCGGCCACCGACAAGG ACGTCGACGAGCAAGGCCGACGTCTGATCAACTGTAGCCCTGCCGTGTTT CAGAAGGTTTTGGACGTGCTGCGCATGAGGAAGCGCGCGGCCTGGGCGGC TTCTGACCGAGACTTGGCACGCGTTCGTGTGGACCCAGCTGACCGCCCGG CGTTTGATAGTTTTGTCAACATGTACTTCCCGGGCTTCGAGAACTTCATC ACGGACATGGTCGTTCCTCAAGGGTCTGCCCAGAGTGGCTAGTGCACCTT GTGAGGCGTGGACCGAGGGTGAGATGTTGATATACGTCGGTTGCGCCAGA GTTTTGTAGTGGAATCTTTCTGTAGGATTAGCGATGTCCGGACTCAGGTG GTGTTGGTCGGCGCCAGAAGGATGGTGCAATCGCTACCGTCGCCTGCATG GGACTAGCAGTCGCCTGAGACTGGAATCCGCATTGTCGACACGTCACTTC GGTGATATGTGCTTTCAAATGCACTCGCTTCTGGCACCGACCGTCACTTG TTTGCTCTCCCCTCTTTTCACCCTTTTGTCAGAGTGTCAAGTGTTGTCAA GACGCGCGGCGCTAAGGCGGTTACTTCCTGCAACACCATAGGTCACACCG GGCTTTATTTATGTAGGAGGGAAGGCGAACAATTGTGTTGCGTCGCGTGG TGAGGGCTGATCTTTTGCTCCTGAGCTAGGCTCTGCCTTGGTTGCTATGT GTATTTCACAACACCTCGAGTTGGAAATGTGCATCTGGAACCAGAAAGTA GTAGCGTAGATGGGTACTTGTTTATGTAGTGGAAGCACCGCCAACGTTCT TTAGCCCGTGAGCAACTACTGGTGCGTTGAGATCTTGATGTTGTCCATAG GTCGGCAGTGCATTTGGTTCACGGCTTCCTGACCCGTTCATTCTCGCTGA CGGTTCCCCATAGATATCTTGTGTTTTGCTGTGGGTGTACTGGCAGTCTC TTGTTGATGATATGGGTTGGCTTCAATCTGGAAGTGAATGACAGCCAAGA GAGTACGTGCTTGTTTTGATGGTGTCGGCATAGCGGGATTCGAAGAGTAG GGAAATGAAATACCGGGTAGAGTTCAGACGGCTTTTGCATGAGTGAGCAA ACCGCCAAACTCTCATCACGAATCTTACCTCTAACTTGAAGTACTGCTGC AGCGCCGCCGCCTCGTCTCTTCGGATGTTGATGCACAAGTTATAGTGGAC GGATGGGAAGATGTTGACCTCAAGGTGCTTGAACACGGACACCTGTAGAA TTCAAGGAGTGTTTTTGCCACTCATACAATAGTAAAACAGTACGTTCAGC CAAACGTGACTGGGCGTGAAATACAGTGGAGCGAGACAAAGCGAGACTCA TTCGCCTTCGGTTGGTACTGATTGCAGGCCGACGGGTTGTAAGATTTTCC TCCCGGCGGGCGCTTCGCACTAAGACACGCTTTTACGCATGTAAGTTGGC CGCATTGTACCTTGTCAGCACAGGCCTTCCTTGTCTCTTCGATGCCATAT GGTAGTGTGATTGGGGTTTGGTCACTCACCTCGGTATTCCCGACGAGGAC GGGCGGACCACCGTCTGCCCTGATAGATATCATTATTTCCTTAGGCTTGT GCGGTCGGGGGGTGCAGCCTGTGGCCGTGGTGCCATCCTCGCTTCCGCAG CATGACCATCTTCCAGCTCGTCTTGCCCGGCATGCAAGCGAGAACAACGA GTGAACAACAGACGGAAATTCATGGGAAAAGCGAAGCCACACAGTTGCTG GCTGCGCGGCATCTAAGAATGGGCCGATACTATCAAGTACTTACAAAACA CCAAGGCGTTTGGCGCATAACAACTACCAGGTACTACCTTGCTTACCCTT GAGGCCTGGTGGCGTCGGTGGTGTGGCCGACTCCGTCGATCACGAATACG CCCTCTTCACCGTCGCTGTCGCAGTGAATTCTG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig871:48..3680+

>mRNA_Ecto-sp13_S_contig871.20176.1 ID=mRNA_Ecto-sp13_S_contig871.20176.1|Name=mRNA_Ecto-sp13_S_contig871.20176.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1731bp|location=Sequence derived from alignment at Ecto-sp13_S_contig871:48..3680+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCGCGTTGCCACATGAACGAGAATGATACATTCTCGGCGACAGTAAA
AGCGTACTCCAAGGAAATGGAAGCAGCCCTCAGCCAGAGGCGGAAAGAGA
TGAGCCATGCCTGGGAAGACGTGGACCGGGGCTGGCACGAGCTCAACCAA
TGCAGAGTCGACGCCGGCATCACCAAACCCTCTGGCTCCCAGGAAGGGAT
GCTGAGGTTGAACGTGGGTGGCTCGCATCTGAACTTCCGTCGCTGCGTCC
TTGATGGCAAGAAAGAACCGTCCGCTACCTGGGCCCTGGGCAACCTGTTT
GAGAACGTGTGGGACGACCGCCTCCCGCGAGACAGCGACGGACGGATCGT
GCTGGACGAGTCCCCGGCTTGCGTCAAGCACCTCATTCACTCGCTCATAG
AGAGCTCGGGCGCGGCACCGGGCTCCCTACCCCGCGGTGAGACCTTAGCC
CCAGACGAAATGGTGTACCTGCCCCATGTCGCCCGCGCTCTCGGGTTGTC
GGCGTATATACCGCTCAAGGGTATGGAAGTAGTAGGCGGAACAACGATCC
TCAGCCAGCATGAGGTTGGGCAACTGACGGCAACTCTTCAGGGCTGGTGC
CCTGGTAACCCCAACACCATGCAACTGCTCTACCGCGCCTCTCGAGACGG
CTGGAGTCCGTACCCATTTCATGCTAGTTGCGGGAACAACAGCCCCAACA
CGATCACATTGCTGAGGGTTGGCGCCAGTGCAAGCATCGTTGGCGGCTTC
TCGAGCGTGCCTTGGAGTCCTCACGCATTCGGTGGGGATTCGGTTATGAG
CTCTCTCGGGGCGTTCATATTCATGCTCAAAGATAGTGATATGGGAGGGC
CCAACAGCTTTCAGCCAGTGAAGTGGCGCAAAAGGGATAACAACGGAGGA
TACGACGTGGTTGTTGGTGCCAGTCGCGGACCTTACTTTGGACGAACCGA
CTTGGTGGTCAACTTCAGCTACATTCCCGTAACTCTTCAGGCACAGCCGT
ACAGTTATGACGTCCCGTCAGGCTCAACGTTCCCTAATCTCAACGGACAA
ACTATCACGGAAATCGAGGTATTTCAAGTGTATTCAGCGGCAGCGAGTAC
ATCGTCGCCCTCCAAACGCCTCAAGATTCAGGGCCCAGAAGGCATACATG
GCGCTGTGAGCACGAGCTCTACGAACACGACCTCGCGGGAGGCAAACTCC
GATACAGGAACATTTGGCAATGCAATCGCCGGCGCCCTCATGGAGGAGCG
AATCGCGTTGCACCAAGCGGAAGCCGAGCTCGAACAAGCACACAGCAAAG
CGGTGGCATCTGGCGACGCGTTGGCTGCGGTCTACGGTCCCGAGGTCGCA
CGCGGTGCCATCGATACGGTGGTGGAGCTCAGCGTGCGGGGGACCAGGAT
GACGACCATACGCTCGACTCTGCAGGCCTGCCGCGAGTCCGCCCTCGCCG
CTTTGTTCAACGAGGACAAGTGGCCGGCCACCGACAAGGACGTCGACGAG
CAAGGCCGACGTCTGATCAACTGTAGCCCTGCCGTGTTTCAGAAGGTTTT
GGACGTGCTGCGCATGAGGAAGCGCGCGGCCTGGGCGGCTTCTGACCGAG
ACTTGGCACGCGTTCGTGTGGACCCAGCTGACCGCCCGGCGTTTGATAGT
TTTGTCAACATGTACTTCCCGGGCTTCGAGAACTTCATCACGGACATGGT
CGTTCCTCAAGGGTCTGCCCAGAGTGGCTAG
back to top