mRNA_Ecto-sp13_S_contig86958.20155.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig86958.20155.1
Unique NamemRNA_Ecto-sp13_S_contig86958.20155.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig86958.20155.1 vs. uniprot
Match: A0A6H5K2J5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K2J5_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 3.150e-21
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 KAYLTNPTVSRSAKVEMVDKAFDAKSKTSSVTKNLLLAMAGNARLADAEKV 153
            KAYLTNPTVSRSAKVEMVDKAFDAKSKTSSVTKNLLLAMAGNARLADAEKV
Sbjct:  152 KAYLTNPTVSRSAKVEMVDKAFDAKSKTSSVTKNLLLAMAGNARLADAEKV 202
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BLAST of mRNA_Ecto-sp13_S_contig86958.20155.1 vs. uniprot
Match: D7FJT6_ECTSI (ATP synthase O subunit, mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJT6_ECTSI)

HSP 1 Score: 92.0 bits (227), Expect = 3.960e-21
Identity = 51/51 (100.00%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 KAYLTNPTVSRSAKVEMVDKAFDAKSKTSSVTKNLLLAMAGNARLADAEKV 153
            KAYLTNPTVSRSAKVEMVDKAFDAKSKTSSVTKNLLLAMAGNARLADAEKV
Sbjct:  168 KAYLTNPTVSRSAKVEMVDKAFDAKSKTSSVTKNLLLAMAGNARLADAEKV 218
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BLAST of mRNA_Ecto-sp13_S_contig86958.20155.1 vs. uniprot
Match: A0A7S4D8J3_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4D8J3_HETAK)

HSP 1 Score: 51.6 bits (122), Expect = 2.560e-6
Identity = 33/50 (66.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:    4 AYLTNPTVSRSAKVEMVDKAFDAKSKTSSVTKNLLLAMAGNARLADAEKV 153
            AYL NPTVSR AKV  VDK F A S  SS+T+NLL AMA NARL +  KV
Sbjct:  118 AYLRNPTVSREAKVGAVDKLF-AGSSVSSLTQNLLSAMASNARLGETGKV 166
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig86958.20155.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5K2J5_9PHAE3.150e-21100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJT6_ECTSI3.960e-21100.00ATP synthase O subunit, mitochondrial n=1 Tax=Ecto... [more]
A0A7S4D8J3_HETAK2.560e-666.00Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig86958contigEcto-sp13_S_contig86958:3..155 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score94.7
Seed ortholog evalue1.3e-17
Seed eggNOG ortholog2880.D7FJT6
Preferred nameATP5
Model size153
KEGG koko:K02113,ko:K02137
KEGG TC3.A.2.1
KEGG Pathwayko00190,ko00195,ko01100,ko04714,ko05010,ko05012,ko05016,map00190,map00195,map01100,map04714,map05010,map05012,map05016
KEGG ModuleM00157,M00158
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0005753,GO:0005886,GO:0008270,GO:0009507,GO:0009536,GO:0016020,GO:0016469,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0032991,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0045259,GO:0046872,GO:0046914,GO:0050897,GO:0071944,GO:0098796,GO:0098798,GO:0098800
Exons1
EggNOG free text desc.proton-transporting ATP synthase activity, rotational mechanism
EggNOG OGsCOG0712@1,KOG1662@2759
Cds size153
COG Functional cat.C
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00194
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464142.139757-CDS-Ecto-sp13_S_contig86958:2..1551681464142.139757-CDS-Ecto-sp13_S_contig86958:2..155Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig86958 3..155 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig86958.20155.1prot_Ecto-sp13_S_contig86958.20155.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig86958 3..155 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig86958.20155.1

>prot_Ecto-sp13_S_contig86958.20155.1 ID=prot_Ecto-sp13_S_contig86958.20155.1|Name=mRNA_Ecto-sp13_S_contig86958.20155.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=51bp
KAYLTNPTVSRSAKVEMVDKAFDAKSKTSSVTKNLLLAMAGNARLADAEK
V
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mRNA from alignment at Ecto-sp13_S_contig86958:3..155+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig86958.20155.1 ID=mRNA_Ecto-sp13_S_contig86958.20155.1|Name=mRNA_Ecto-sp13_S_contig86958.20155.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=153bp|location=Sequence derived from alignment at Ecto-sp13_S_contig86958:3..155+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGCGTACCTTACCAACCCCACGGTGTCGCGGAGCGCAAAGGTGGAGAT
GGTTGACAAGGCCTTCGACGCCAAGTCCAAGACCTCTTCCGTGACGAAGA
ACCTGCTCCTCGCCATGGCGGGGAATGCCAGGCTGGCGGACGCCGAAAAG
GTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig86958:3..155+

>mRNA_Ecto-sp13_S_contig86958.20155.1 ID=mRNA_Ecto-sp13_S_contig86958.20155.1|Name=mRNA_Ecto-sp13_S_contig86958.20155.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=153bp|location=Sequence derived from alignment at Ecto-sp13_S_contig86958:3..155+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGCGTACCTTACCAACCCCACGGTGTCGCGGAGCGCAAAGGTGGAGAT
GGTTGACAAGGCCTTCGACGCCAAGTCCAAGACCTCTTCCGTGACGAAGA
ACCTGCTCCTCGCCATGGCGGGGAATGCCAGGCTGGCGGACGCCGAAAAG
GTG
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