mRNA_Ecto-sp13_S_contig86918.20152.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig86918.20152.1
Unique NamemRNA_Ecto-sp13_S_contig86918.20152.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig86918.20152.1 vs. uniprot
Match: A0A6H5K9M8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9M8_9PHAE)

HSP 1 Score: 126 bits (317), Expect = 1.960e-32
Identity = 61/62 (98.39%), Postives = 61/62 (98.39%), Query Frame = 1 
Query:    1 MAEYYEALVLFDYQPGSIDELRLFEGELVEVRVGGEGVGEEEGWLYGSDQRGRHGTFPANYV 186
            MAEYYEALVLFDYQP SIDELRLFEGELVEVRVGGEGVGEEEGWLYGSDQRGRHGTFPANYV
Sbjct:    1 MAEYYEALVLFDYQPVSIDELRLFEGELVEVRVGGEGVGEEEGWLYGSDQRGRHGTFPANYV 62
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BLAST of mRNA_Ecto-sp13_S_contig86918.20152.1 vs. uniprot
Match: D7G7A1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7A1_ECTSI)

HSP 1 Score: 126 bits (317), Expect = 1.960e-32
Identity = 61/62 (98.39%), Postives = 61/62 (98.39%), Query Frame = 1 
Query:    1 MAEYYEALVLFDYQPGSIDELRLFEGELVEVRVGGEGVGEEEGWLYGSDQRGRHGTFPANYV 186
            MAEYYEALVLFDYQP SIDELRLFEGELVEVRVGGEGVGEEEGWLYGSDQRGRHGTFPANYV
Sbjct:    1 MAEYYEALVLFDYQPVSIDELRLFEGELVEVRVGGEGVGEEEGWLYGSDQRGRHGTFPANYV 62
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BLAST of mRNA_Ecto-sp13_S_contig86918.20152.1 vs. uniprot
Match: A0A8J4PKM4_9MYCE (Uncharacterized protein n=1 Tax=Polysphondylium violaceum TaxID=133409 RepID=A0A8J4PKM4_9MYCE)

HSP 1 Score: 50.1 bits (118), Expect = 1.700e-5
Identity = 24/54 (44.44%), Postives = 33/54 (61.11%), Query Frame = 1 
Query:   25 VLFDYQPGSIDELRLFEGELVEVRVGGEGVGEEEGWLYGSDQRGRHGTFPANYV 186
            VL+DYQ     EL + EGEL+ +        E+EGW +GS+ +G  G FP+NYV
Sbjct:  449 VLYDYQSECEGELEIKEGELLVIEY------EDEGWFFGSNDKGASGRFPSNYV 496
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BLAST of mRNA_Ecto-sp13_S_contig86918.20152.1 vs. uniprot
Match: UPI0006450F44 (hypothetical protein n=1 Tax=Acytostelium subglobosum LB1 TaxID=1410327 RepID=UPI0006450F44)

HSP 1 Score: 49.3 bits (116), Expect = 3.190e-5
Identity = 22/54 (40.74%), Postives = 33/54 (61.11%), Query Frame = 1 
Query:   25 VLFDYQPGSIDELRLFEGELVEVRVGGEGVGEEEGWLYGSDQRGRHGTFPANYV 186
            VL+ Y P    E+ +FEGE + ++       E+EGW +G+ +RG  G FP+NYV
Sbjct:  458 VLYTYHPDGEGEIDIFEGEQLTIQY------EDEGWFFGTSERGVSGRFPSNYV 505
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BLAST of mRNA_Ecto-sp13_S_contig86918.20152.1 vs. uniprot
Match: D3BIJ4_POLPP (SH3 domain-containing protein n=1 Tax=Polysphondylium pallidum (strain ATCC 26659 / Pp 5 / PN500) TaxID=670386 RepID=D3BIJ4_POLPP)

HSP 1 Score: 48.9 bits (115), Expect = 4.360e-5
Identity = 23/54 (42.59%), Postives = 32/54 (59.26%), Query Frame = 1 
Query:   25 VLFDYQPGSIDELRLFEGELVEVRVGGEGVGEEEGWLYGSDQRGRHGTFPANYV 186
            VL+DY      EL + EGE + +        E+EGW YGS+++G  G FP+NYV
Sbjct:  447 VLYDYHSDCEGELEIREGETLTIEY------EDEGWFYGSNEKGSAGRFPSNYV 494
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig86918.20152.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5K9M8_9PHAE1.960e-3298.39Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7A1_ECTSI1.960e-3298.39Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A8J4PKM4_9MYCE1.700e-544.44Uncharacterized protein n=1 Tax=Polysphondylium vi... [more]
UPI0006450F443.190e-540.74hypothetical protein n=1 Tax=Acytostelium subglobo... [more]
D3BIJ4_POLPP4.360e-542.59SH3 domain-containing protein n=1 Tax=Polysphondyl... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig86918contigEcto-sp13_S_contig86918:34..219 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score129.0
Seed ortholog evalue7.5e-28
Seed eggNOG ortholog2880.D7G7A1
Model size186
KEGG koko:K18595,ko:K18598
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.microtubule binding
EggNOG OGsCOG2319@1,KOG2106@2759
Cds size186
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04812
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464141.9396212-CDS-Ecto-sp13_S_contig86918:33..2191681464141.9396212-CDS-Ecto-sp13_S_contig86918:33..219Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig86918 34..219 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig86918.20152.1prot_Ecto-sp13_S_contig86918.20152.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig86918 34..219 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig86918.20152.1

>prot_Ecto-sp13_S_contig86918.20152.1 ID=prot_Ecto-sp13_S_contig86918.20152.1|Name=mRNA_Ecto-sp13_S_contig86918.20152.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=62bp
MAEYYEALVLFDYQPGSIDELRLFEGELVEVRVGGEGVGEEEGWLYGSDQ
RGRHGTFPANYV
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mRNA from alignment at Ecto-sp13_S_contig86918:34..219+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig86918.20152.1 ID=mRNA_Ecto-sp13_S_contig86918.20152.1|Name=mRNA_Ecto-sp13_S_contig86918.20152.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=186bp|location=Sequence derived from alignment at Ecto-sp13_S_contig86918:34..219+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCGAATACTACGAAGCGCTTGTGCTTTTCGACTACCAGCCGGGCTC
GATCGACGAGCTCCGCCTCTTCGAGGGCGAGCTGGTAGAAGTACGGGTTG
GTGGGGAAGGTGTCGGCGAGGAAGAAGGGTGGCTCTACGGGTCAGATCAG
AGAGGTCGCCATGGAACATTCCCGGCCAACTACGTG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig86918:34..219+

>mRNA_Ecto-sp13_S_contig86918.20152.1 ID=mRNA_Ecto-sp13_S_contig86918.20152.1|Name=mRNA_Ecto-sp13_S_contig86918.20152.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=186bp|location=Sequence derived from alignment at Ecto-sp13_S_contig86918:34..219+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCCGAATACTACGAAGCGCTTGTGCTTTTCGACTACCAGCCGGGCTC
GATCGACGAGCTCCGCCTCTTCGAGGGCGAGCTGGTAGAAGTACGGGTTG
GTGGGGAAGGTGTCGGCGAGGAAGAAGGGTGGCTCTACGGGTCAGATCAG
AGAGGTCGCCATGGAACATTCCCGGCCAACTACGTG
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