mRNA_Ecto-sp13_S_contig86870.20142.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig86870.20142.1
Unique NamemRNA_Ecto-sp13_S_contig86870.20142.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig86870.20142.1 vs. uniprot
Match: D7FUQ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUQ9_ECTSI)

HSP 1 Score: 90.9 bits (224), Expect = 6.890e-20
Identity = 41/42 (97.62%), Postives = 42/42 (100.00%), Query Frame = 1 
Query:   19 EADEFKFTTNIIRWRHKRGNLGRPELGDDGRALRESNTRLVR 144
            EADEFKFTTNIIRWRHKRGNLGRPELGDDGRALRESNTRLV+
Sbjct:   97 EADEFKFTTNIIRWRHKRGNLGRPELGDDGRALRESNTRLVK 138
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BLAST of mRNA_Ecto-sp13_S_contig86870.20142.1 vs. uniprot
Match: A0A836CAV3_9STRA (Leo1-like protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CAV3_9STRA)

HSP 1 Score: 83.6 bits (205), Expect = 7.560e-17
Identity = 39/76 (51.32%), Postives = 51/76 (67.11%), Query Frame = 1 
Query:   19 EADEFKFTTNIIR----------WRHKRGNLGRPELGDDGRALRESNTRLVRWSDGSTQLLVGDEAFDVEEHSIDR 216
            E + FKFTTNIIR          WRH++   G  E  + G  +RE+NTRLV+WSDGS QL+VG+E FDV EH++D+
Sbjct:  129 EDETFKFTTNIIRQAYFNSLTLEWRHRKDASGALEYDEHGEPIRETNTRLVKWSDGSLQLMVGEEVFDVSEHALDK 204
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BLAST of mRNA_Ecto-sp13_S_contig86870.20142.1 vs. uniprot
Match: A0A448YW85_9STRA (Uncharacterized protein n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448YW85_9STRA)

HSP 1 Score: 65.9 bits (159), Expect = 1.380e-10
Identity = 33/87 (37.93%), Postives = 53/87 (60.92%), Query Frame = 1 
Query:    1 DCSSSQEADEFK-FTTNIIRWRHKRGNLGRPELGDDGRALRESNTRLVRWSDGSTQLLVGDEAFDVEEHSIDRRASCTILCGAILKS 258
            D    +E + +K +  N+IRWR+K+ + G P + D+   +RESNT+LV+WSDGS  L +G EAFD++       +  + L G + +S
Sbjct:  175 DYDEKEEEETYKGYVHNMIRWRYKKDDNGNP-MRDERGLIRESNTKLVKWSDGSFTLHIGKEAFDIQNVDSSTGSGFSGLNGYVYQS 260
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BLAST of mRNA_Ecto-sp13_S_contig86870.20142.1 vs. uniprot
Match: A0A2R2MJW2_LINUN (RNA polymerase-associated protein LEO1 n=1 Tax=Lingula unguis TaxID=7574 RepID=A0A2R2MJW2_LINUN)

HSP 1 Score: 61.6 bits (148), Expect = 4.370e-9
Identity = 26/50 (52.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:   46 NIIRWRHKRGNLGRPELGDDGRALRESNTRLVRWSDGSTQLLVGDEAFDV 195
            N IRWR K+   G   + ++G+ LRESN R++RWSDGS  L +G+E FDV
Sbjct:  370 NTIRWRPKKDEFGNIMMDENGKQLRESNARIIRWSDGSMSLHLGNEVFDV 419
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BLAST of mRNA_Ecto-sp13_S_contig86870.20142.1 vs. uniprot
Match: A0A7J7JAN1_BUGNE (LEO1 n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A7J7JAN1_BUGNE)

HSP 1 Score: 60.1 bits (144), Expect = 5.560e-9
Identity = 29/74 (39.19%), Postives = 40/74 (54.05%), Query Frame = 1 
Query:   46 NIIRWRHKRGNLGRPELGDDGRALRESNTRLVRWSDGSTQLLVGDEAFDVEEHSIDRRASCTILCGAILKSGGV 267
            N IRWR+ +   G     + G  +RESN R+V+WSDGS  L VG E F++    I   +   I  GA+L+   V
Sbjct:   85 NTIRWRYVKDEAGNIMTDEFGEKIRESNARMVKWSDGSLSLHVGSEIFEISSVPIKEHSHLYIRQGAVLQGQAV 158
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BLAST of mRNA_Ecto-sp13_S_contig86870.20142.1 vs. uniprot
Match: E1Z4X2_CHLVA (Uncharacterized protein n=1 Tax=Chlorella variabilis TaxID=554065 RepID=E1Z4X2_CHLVA)

HSP 1 Score: 61.2 bits (147), Expect = 5.790e-9
Identity = 36/86 (41.86%), Postives = 45/86 (52.33%), Query Frame = 1 
Query:    1 DCSSSQEADEFKFTT------NIIRWRHKRGNLGRPELGDDGRALRESNTRLVRWSDGSTQLLVGDEAFDVEEHSIDRRASCTILC 240
            D  + +E DE  F        N IRWR          + ++G  +RESN R VRWSDGS QL+VGDE  DV+E  ID     T +C
Sbjct:  125 DAGAEEEVDERGFKRVRLRDQNCIRWRWG--------VDEEGNQVRESNARFVRWSDGSLQLVVGDEVMDVKE--IDTTNEHTYMC 200
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BLAST of mRNA_Ecto-sp13_S_contig86870.20142.1 vs. uniprot
Match: B7FUI2_PHATC (Predicted protein (Fragment) n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B7FUI2_PHATC)

HSP 1 Score: 60.5 bits (145), Expect = 1.080e-8
Identity = 26/63 (41.27%), Postives = 43/63 (68.25%), Query Frame = 1 
Query:   13 SQEADEF-KFTTNIIRWRHKRGNLGRPELGDDGRALRESNTRLVRWSDGSTQLLVGDEAFDVE 198
            + E D+F +   N++RWR+++ + G     +  R LRESN+RLV+W DGS  L +G+EAF+++
Sbjct:  159 AMEEDDFGQSVYNLVRWRYRKDDTGNYVRDEQDRLLRESNSRLVQWEDGSYTLHIGNEAFEID 221
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BLAST of mRNA_Ecto-sp13_S_contig86870.20142.1 vs. uniprot
Match: A0A015M919_RHIIW (Leo1p n=6 Tax=Rhizophagus irregularis TaxID=588596 RepID=A0A015M919_RHIIW)

HSP 1 Score: 60.5 bits (145), Expect = 1.110e-8
Identity = 30/77 (38.96%), Postives = 46/77 (59.74%), Query Frame = 1 
Query:   10 SSQEADEFKFTT-------NIIRWRHKRGNLGRPELGDDGRALRESNTRLVRWSDGSTQLLVGDEAFDVEEHSIDRR 219
            S  E D++K  T       N IRWR+KR  +G    G+    ++ESNT++++WSDGS  LL+G+E F +  H I ++
Sbjct:  219 SYTEEDDYKHETTIRLGAENTIRWRYKRNEMG----GET--EVKESNTKMIKWSDGSMSLLIGEEMFLINSHDISKQ 289
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BLAST of mRNA_Ecto-sp13_S_contig86870.20142.1 vs. uniprot
Match: A0A3S1HL45_ELYCH (Uncharacterized protein n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A3S1HL45_ELYCH)

HSP 1 Score: 60.5 bits (145), Expect = 1.130e-8
Identity = 27/50 (54.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:   46 NIIRWRHKRGNLGRPELGDDGRALRESNTRLVRWSDGSTQLLVGDEAFDV 195
            N +RWR K    G   L ++G+ LRESN R+V+WSDGS  L +GDE FDV
Sbjct:  507 NTVRWRKKLDADGNEMLDEEGKPLRESNARIVKWSDGSMSLHLGDEIFDV 556
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BLAST of mRNA_Ecto-sp13_S_contig86870.20142.1 vs. uniprot
Match: A0A2Z6QG44_9GLOM (Uncharacterized protein n=2 Tax=Rhizophagus clarus TaxID=94130 RepID=A0A2Z6QG44_9GLOM)

HSP 1 Score: 60.1 bits (144), Expect = 1.510e-8
Identity = 30/77 (38.96%), Postives = 46/77 (59.74%), Query Frame = 1 
Query:   10 SSQEADEFKFTT-------NIIRWRHKRGNLGRPELGDDGRALRESNTRLVRWSDGSTQLLVGDEAFDVEEHSIDRR 219
            S  E D++K  T       N IRWR+KR  +G    G+    ++ESNT++++WSDGS  LL+G+E F +  H I ++
Sbjct:  218 SYTEEDDYKHETTIRLGAENTIRWRYKRNEMG----GET--EVKESNTKMIKWSDGSMTLLIGEEMFLINSHDISKQ 288
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig86870.20142.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FUQ9_ECTSI6.890e-2097.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CAV3_9STRA7.560e-1751.32Leo1-like protein-domain-containing protein n=1 Ta... [more]
A0A448YW85_9STRA1.380e-1037.93Uncharacterized protein n=1 Tax=Pseudo-nitzschia m... [more]
A0A2R2MJW2_LINUN4.370e-952.00RNA polymerase-associated protein LEO1 n=1 Tax=Lin... [more]
A0A7J7JAN1_BUGNE5.560e-939.19LEO1 n=1 Tax=Bugula neritina TaxID=10212 RepID=A0A... [more]
E1Z4X2_CHLVA5.790e-941.86Uncharacterized protein n=1 Tax=Chlorella variabil... [more]
B7FUI2_PHATC1.080e-841.27Predicted protein (Fragment) n=1 Tax=Phaeodactylum... [more]
A0A015M919_RHIIW1.110e-838.96Leo1p n=6 Tax=Rhizophagus irregularis TaxID=588596... [more]
A0A3S1HL45_ELYCH1.130e-854.00Uncharacterized protein n=1 Tax=Elysia chlorotica ... [more]
A0A2Z6QG44_9GLOM1.510e-838.96Uncharacterized protein n=2 Tax=Rhizophagus clarus... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig86870contigEcto-sp13_S_contig86870:297..566 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeViridiplantae
Stop1
Start0
Seed ortholog score60.8
Seed ortholog evalue3.7e-07
Seed eggNOG ortholog554065.XP_005851524.1
Model size270
KEGG koko:K15177
Hectar predicted targeting categoryother localisation
GOsGO:0000428,GO:0000993,GO:0001098,GO:0001099,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005829,GO:0006355,GO:0006357,GO:0006950,GO:0008023,GO:0008150,GO:0009266,GO:0009409,GO:0009628,GO:0009889,GO:0009891,GO:0009893,GO:0009909,GO:0009910,GO:0010048,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0016591,GO:0016593,GO:0019219,GO:0019222,GO:0019899,GO:0030880,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031974,GO:0031981,GO:0032784,GO:0032786,GO:0032968,GO:0032991,GO:0034243,GO:0043175,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044877,GO:0045309,GO:0045893,GO:0045935,GO:0045944,GO:0048518,GO:0048519,GO:0048522,GO:0048580,GO:0048581,GO:0048831,GO:0050789,GO:0050793,GO:0050794,GO:0050815,GO:0050896,GO:0051093,GO:0051171,GO:0051173,GO:0051219,GO:0051239,GO:0051241,GO:0051252,GO:0051254,GO:0055029,GO:0060255,GO:0061695,GO:0065007,GO:0070013,GO:0070063,GO:0080090,GO:0099122,GO:1902494,GO:1902680,GO:1903506,GO:1903508,GO:1990234,GO:1990269,GO:2000026,GO:2000112,GO:2000241,GO:2000242,GO:2001141
Exons1
EggNOG free text desc.Leo1-like protein
EggNOG OGs34M11@3041,37MGA@33090,KOG2428@1,KOG2428@2759
Cds size270
COG Functional cat.S
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03021
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464141.2347643-CDS-Ecto-sp13_S_contig86870:296..5661681464141.2347643-CDS-Ecto-sp13_S_contig86870:296..566Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig86870 297..566 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig86870.20142.1prot_Ecto-sp13_S_contig86870.20142.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig86870 297..566 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig86870.20142.1

>prot_Ecto-sp13_S_contig86870.20142.1 ID=prot_Ecto-sp13_S_contig86870.20142.1|Name=mRNA_Ecto-sp13_S_contig86870.20142.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=90bp
DCSSSQEADEFKFTTNIIRWRHKRGNLGRPELGDDGRALRESNTRLVRWS
DGSTQLLVGDEAFDVEEHSIDRRASCTILCGAILKSGGV*
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mRNA from alignment at Ecto-sp13_S_contig86870:297..566-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig86870.20142.1 ID=mRNA_Ecto-sp13_S_contig86870.20142.1|Name=mRNA_Ecto-sp13_S_contig86870.20142.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=270bp|location=Sequence derived from alignment at Ecto-sp13_S_contig86870:297..566- (Ectocarpus species13 EcNAP12_S_4_19m)
GATTGTTCTTCTTCTCAGGAAGCGGATGAGTTCAAGTTCACGACCAACAT
CATCCGGTGGCGGCACAAGCGGGGCAACCTCGGTAGGCCGGAGCTGGGAG
ACGACGGCAGGGCCCTGAGAGAGAGCAACACCCGCCTCGTGAGATGGAGC
GATGGCTCGACCCAGCTGCTAGTCGGCGACGAGGCCTTCGACGTCGAGGA
GCACTCTATCGACAGGCGAGCGTCGTGTACCATATTGTGTGGTGCTATTC
TGAAGAGCGGAGGGGTTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig86870:297..566-

>mRNA_Ecto-sp13_S_contig86870.20142.1 ID=mRNA_Ecto-sp13_S_contig86870.20142.1|Name=mRNA_Ecto-sp13_S_contig86870.20142.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=270bp|location=Sequence derived from alignment at Ecto-sp13_S_contig86870:297..566- (Ectocarpus species13 EcNAP12_S_4_19m)
GATTGTTCTTCTTCTCAGGAAGCGGATGAGTTCAAGTTCACGACCAACAT
CATCCGGTGGCGGCACAAGCGGGGCAACCTCGGTAGGCCGGAGCTGGGAG
ACGACGGCAGGGCCCTGAGAGAGAGCAACACCCGCCTCGTGAGATGGAGC
GATGGCTCGACCCAGCTGCTAGTCGGCGACGAGGCCTTCGACGTCGAGGA
GCACTCTATCGACAGGCGAGCGTCGTGTACCATATTGTGTGGTGCTATTC
TGAAGAGCGGAGGGGTTTGA
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