mRNA_Ecto-sp13_S_contig8682.20137.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8682.20137.1
Unique NamemRNA_Ecto-sp13_S_contig8682.20137.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8682.20137.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8682contigEcto-sp13_S_contig8682:620..3958 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size108
Hectar predicted targeting categoryno signal peptide or anchor
Exons2
Cds size105
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464140.8432653-CDS-Ecto-sp13_S_contig8682:620..6651681464140.8432653-CDS-Ecto-sp13_S_contig8682:620..665Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8682 621..665 -
1681464140.8547113-CDS-Ecto-sp13_S_contig8682:3898..39581681464140.8547113-CDS-Ecto-sp13_S_contig8682:3898..3958Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8682 3899..3958 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8682.20137.1prot_Ecto-sp13_S_contig8682.20137.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8682 621..3958 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8682.20137.1

>prot_Ecto-sp13_S_contig8682.20137.1 ID=prot_Ecto-sp13_S_contig8682.20137.1|Name=mRNA_Ecto-sp13_S_contig8682.20137.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=35bp
DNNGVEGISGLTGLLEQQLLKGFKQAMDDALPEGW
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mRNA from alignment at Ecto-sp13_S_contig8682:620..3958-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8682.20137.1 ID=mRNA_Ecto-sp13_S_contig8682.20137.1|Name=mRNA_Ecto-sp13_S_contig8682.20137.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3339bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8682:620..3958- (Ectocarpus species13 EcNAP12_S_4_19m)
GACAATAACGGCGTGGAGGGTATCTCAGGCCTCACTGGACTTTTGGAACA
ACAGTTGCTGGTGAGTCGAAGGAGTTTGGATGGCATGACTCGCATACAGT
ACAGCAGTAGTGCAAACGCAGCAGTGCAGTAAATGTCCTTCAAGTTATTG
CTGGTCGCTCTTACTCCCCAGTCCAAGAGGTTGAGAGTCAGTATGCCCTG
GCACAGAATTATCCCTTCCTGTGCCCTCCTTCGAGATTTCTGGTGGTCTG
ACGAGTCTGCCTCTGAGGTACTTGGAAGAAAAAAACAAAAACAAAGACAC
ATACAAGTACCAGCAGTCTACTGTCGTCGAGAATATTCCGCCGCTGATCA
ATATCGAGTGGAGGAAGACTTCTCGCTTCATCGGCACGGGAGGGGACGGC
ACGGCAGTGTACCATGGCCCGTTACGCGGAGGGGACCAGCTCCTTTGGCC
GTCAAAGCGATCCCTAGAGCACATGACGGAAGGCAGAAGCGCGGGTGTCG
ACCGGGGCGGCAGAGACAATGCACACAACGAGAGCGGCCGAACGCCGGTT
CAGACAATGTTGGGCCACTATCGACGAGCAGAGGCGAAATCACCAGACCG
TAGTGAGGCGTGAGAGCAACCGGTGCTGCAGTTGCTCTTGTGGTGGAGTT
GATGTCGTGTCATGCGAAGATTTCCTGATTCCGTGCCGTACAGTCTTGGA
AGACCCAGTGAGAGCACAGAAGATCAGCGCTGCCCCTATGCGGATATGGA
TGTGATCACGGAGCTGGGGTGGAACTTCGGGAGTTCGCGTTGCACTCCTT
TGGCGAATTCCAGGAGCGATGGTTTCAGCACCAGGTGGAGACATCGCAGA
GGAGAAACGGAAGTTGGATGCATAAAAGCCGTGCGAAAAAAATAACGTGG
AGGACTTGTACTTGGGACTTACGGACGGCAGCATAAATAGCAACTAGTCA
GCCGGGTAAAGGCCAAATGGGGGAACAAAAAGTCGAATCCTGTCGTAGTC
GTCCAGAAAATGACCTCGATGTGGGTGATATAGAACATAATGGTGCTTTC
CATTTGGAGGCTTGGTCAGTTTCGGGACTCCTACGTTTGCAGTCGCAGTC
CCACGGCTGGTATTCATGTAGGGAGAGAGAGCGGTTAGTTTGACTTAACG
TCGCGCCTCGCGGTCAATGCGGCAATGCGCGTTCCGTGTGTCTCTCTCCC
CAACGTGTGGTCTGGAAACGAAGAAACATCATGAAGACATTCGAAAGAAA
ACAGCAATACAAGGTCGATGTTGCGTGGGACTGCGTCGGTGGAAGACAAA
ACGATTTGTTGGAGTCGTGTGATTGTCAACAGCTGGTCTACTGCTACATC
GTTCGAAGTGCCTCGTCGTCAGACAAGCGCACGAAAGAGCATACACACTC
GTACACCATACAAAGGGATCCACAGCCAACCCGCCCAGATATGGTCTTGT
TCGTATGCTGACCAAACCTCGCGTGACAATCAGCACCACCATCGGCAGCG
TCAACGGAGCCGTGACGATCTCGACCTCCACTCGTGCTGCCCTTCTCAGG
AATTCACCCCACTTTTACCGCCAAGGTGCCAGGGGGGGTCTCAGGCCCTG
ATAGCTCAGGGGCCTCCCTGGCCACACACCCAACAATGGACGCCGTGGAA
CCTGCTTCACTCAATCATATATCGCTTCAGCCATTAAGATGGTCTCTACA
TCAGCAGGTCGTGTGTTGGCAAGGAGCTGTGGCTAATAACGGGTGCACTT
GGTGTGGAGATGGTCACAGCCTTCGGGTACCCCTAGTGGACGTTCGCAGG
GACGGTGTGGCGCCGTCTGATCGGCCGACGACTGCCTCCACCCGAGCCCG
ACCATATTTCGACCAGGTGCACCTGAATCGTGGGTATCCAGCCCCCGGTC
GGGGGGGGCGTAGTAATATGTTACTCCCAGCCAACGGCCGGCCAAGAACG
GCGTCAACCGTATGCCCCTGCCACGCTCCTTCCGCTGCCCTGTATGCTGG
CACTTGCGACTTGATGCCTCCGATGTACCCCGCACAAATTTGTCGTGCGG
TTCCTGCCGATATTCGTACTGGCGATAAATGAGCTGTCACCTCGGCGTGC
AATACGCGGCTTTTGCGAGGTCGGTCTTCATCGCTCACGCAGTCATGATC
TACCGCTGCCGGTCTGGATTTTGGTTGCGAGAGGACAACAACAATTATCA
CACCAGCTTCTCTGACGAGAGCCGAGACATTCATCTTCGAACAAGGGTTC
CGCCGACCGTGGGTCTGCGTCCACCCGACACCGTCGGAAGCTTCGGAGTT
CGCGAGCGTTGCTGACGTGTGCGATTCTGCATATTATTCACATCGACCAG
GCAAAGCGACAAACCAATACAAACGTCTGCCAAATAGGCGGAGGAAAAAT
GTAAACACGGTCTAGTCAGAAGGTGTTACCAACGGGGGTACGCGGAGGAG
TTTGACGACGACGCCCTGCTGAAGCACAAGGAAAATACCGAACGCTACCT
AGCAGCCCTGCTGCTTCATCATCTGTTTCGTGTGTGTGTGAGTGGGCTGT
TTCTTGAAACAACCGGCCTTTTTCGGGTAAGGAAGTAGAAACCAGGTATC
CCACCGGGATTGAGGAGTCAAGATCGGGTGCACATGATCGGAAGAAGTCG
AAAAAAGAATAGCGTCGGGTGGCGGCGGGTGGCGGAAGTCAGCCAACGGC
ATGCGGTCGTTGCGAGCGTCGCTAATATTTGTGCCGACTGTGGCAATGTT
TGCACCGGGTGCACCCGTTTCTAGCCACGGTCCTGTGGGGAAAGCACTTT
GGACAAAACCATATTTTGTCCGGAGCTCCGAGTATCGTTCCGGACTATGC
ATACACTATGCCAGGTCTCGGTCTGGGAGCGAGTCTAATTTTGCTAACCC
GATACTAGATGTTGAAACCGAATCAAACCGTTAGGGACTTTACAGAAAAA
AAGCAATGGTGCACTAGGCGCCTCGAGTGAACCCAACGGATACAAGGTAG
CGAAAAATTTATGCCTCTGCCCCCATGGCCCAAAGCCTGAGTTGATCAAC
AATAACAATTATCAAGACTTTATCAGGGACAATCGACAGTGCATTGCTGC
CGAAAGAGCTGACAGTCTTGATGCACTCGCTCACACCAGCGATGCATTGC
ACCCCGGAAGTCAATGTTCTACGAGCGGTGTTCCAAACTATCCAATAGAG
CGTTCCTGTCGTCCGACACACCAACAAATCCTCCCCCACCACACTCAACA
CGTTTCTCAATACTCCCATATCCCGTCGCCTCCATGCATCGAGAAAGGTT
TCAAGCAAGCTATGGACGATGCACTGCCGGAGGGGTGGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8682:620..3958-

>mRNA_Ecto-sp13_S_contig8682.20137.1 ID=mRNA_Ecto-sp13_S_contig8682.20137.1|Name=mRNA_Ecto-sp13_S_contig8682.20137.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=105bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8682:620..3958- (Ectocarpus species13 EcNAP12_S_4_19m)
GACAATAACGGCGTGGAGGGTATCTCAGGCCTCACTGGACTTTTGGAACA
ACAGTTGCTGAAAGGTTTCAAGCAAGCTATGGACGATGCACTGCCGGAGG
GGTGG
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