mRNA_Ecto-sp13_S_contig8662.20107.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig8662.20107.1 vs. uniprot
Match: A0A6H5JHI9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI9_9PHAE) HSP 1 Score: 818 bits (2113), Expect = 7.110e-296 Identity = 431/475 (90.74%), Postives = 442/475 (93.05%), Query Frame = 1
Query: 94 MRALVVSCAFHSPCASPWLLLVLQRFASRAGVVIRPCSAALDGPGEPITEASVRKRSQRGPPVLLRDIFGTRSPWLGMKRMERAPLQRLDRLQEVADLALEDRVESGGRSFSCADIGADHGLLAICLHANGANVIAGDRAAGPLNVARENVGLYLRHAQQAPFSVLATAAAERESPAGKSEYTGTP--TAETLPRATNEGSSGDGVGHEGAVADGVVPRLECRLGDGLAVLEKGEADTVCIAGVGVKTMIQILSASASDSSGDAADSQESSYGRGASVLSRLGVRRLVLQPMDARLEYMRDLRVWLRGNGWRIAQEKIVSTLGKGGRHAFLTLRADCKEMRSIKSGQGVSPFSGPEWPAGMPQGEWSDWLGDFLPSRTMDSNQLRDGGRGTERQEASTFLAYLRHQRDWLTAIELARLRTSRGVTAESQDSTAVSEGVDSVLRAVEDAIRVSGKDESEERLVTSRRWRRSSGKTD 1512
MRALVVSCAFHSPC SPW RFASRAGVVIRPCSAALDGPG PITEASVRKRSQRGPPVLLRDIFGTRSPWLGMKR+ERAPLQRLDRLQEVADLALEDRVESGG SF CADIGADHGLLAICLHANGANVIAGDRAAGPLN+AREN LYLR AQQAPFSVLATAAA+R +PAGKSEYT TP TAETLP+ NEGSSGDGVG+EGAVA GVVPRLECRLGDGLAVLE+GEADTVCIAGVGVKT+IQILSAS SDSSGDAA+SQESS+GRGAS LSRLGVRRLVLQPMDARLEYMRDLRVWLRGNGWRIAQEKIVSTLGKGGRHAFLTLRADC EM S+KS QGVSPFSGPEWPAGMPQGEWSDWLGDFLPSRTMDSNQLRDGGR TERQEA TFLAYLRHQRDWLTAIE AR RTSR VTAESQDSTAVSE V SVLRAVEDAIRVSGKD SEERLVTSRRWRRSSGKTD
Sbjct: 1 MRALVVSCAFHSPCVSPW------RFASRAGVVIRPCSAALDGPGGPITEASVRKRSQRGPPVLLRDIFGTRSPWLGMKRLERAPLQRLDRLQEVADLALEDRVESGGGSFGCADIGADHGLLAICLHANGANVIAGDRAAGPLNIARENARLYLRRAQQAPFSVLATAAAQRIAPAGKSEYTRTPDPTAETLPQPINEGSSGDGVGNEGAVAHGVVPRLECRLGDGLAVLEEGEADTVCIAGVGVKTIIQILSASTSDSSGDAANSQESSHGRGASALSRLGVRRLVLQPMDARLEYMRDLRVWLRGNGWRIAQEKIVSTLGKGGRHAFLTLRADCMEMSSVKSDQGVSPFSGPEWPAGMPQGEWSDWLGDFLPSRTMDSNQLRDGGRDTERQEAFTFLAYLRHQRDWLTAIERARSRTSRRVTAESQDSTAVSEAVGSVLRAVEDAIRVSGKDGSEERLVTSRRWRRSSGKTD 469
BLAST of mRNA_Ecto-sp13_S_contig8662.20107.1 vs. uniprot
Match: D7FWG2_ECTSI (SAM-dependent methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWG2_ECTSI) HSP 1 Score: 780 bits (2015), Expect = 5.430e-281 Identity = 416/476 (87.39%), Postives = 427/476 (89.71%), Query Frame = 1
Query: 94 MRALVVSCAFHSPCASPWLLLVLQRFASRAGVVIRPCSAALDGPGEPITEASVRKRSQRGPPVLLRDIFGTRSPWLGMKRMERAPLQRLDRLQEVADLALEDRVESGGRSFSCADIGADHGLLAICLHANGANVIAGDRAAGPLNVARENVGLYLRHAQQAPFSVLATAAAERESPAGKSEYTGTP--TAETLPRATNEGSSGDGVGHEGAVADGVVPRLECRLGDGLAVLEKGEADTVCIAGVGVKTMIQILSASASDSSGDAADSQESSYGRGASVLSRLGVRRLVLQPMDARLEYMRDLRVWLRGNGWRIAQEKIVSTLGKGGRHAFLTLRADCKE-MRSIKSGQGVSPFSGPEWPAGMPQGEWSDWLGDFLPSRTMDSNQLRDGGRGTERQEASTFLAYLRHQRDWLTAIELARLRTSRGVTAESQDSTAVSEGVDSVLRAVEDAIRVSGKDESEERLVTSRRWRRSSGKTD 1512
MRALVVSCAFHSPC QRFASRAGV IRPCSAALDGPG PITEASVRKRSQRG PVLLRDIFGTRSPWLGMKR+ERAPLQRLDRLQEVADLALEDRVESGG SF CADIG DHGLLAICLHANGANVIAGDRAAGPLNVAR+N LYLRHAQQAPFSVL TAAAER +PAGKSE TGTP TAETL R NEGSSG+GVG++GAVADGV PRLECRLGDGLAVLE+GEADTVCIAGVGVKTMIQILS S SDSS D DS ESS+GRG LSRLGVRRLVLQPMDARLEYMRDLRVWLR NGWRI QEKIVSTLGKGGRHAFLTLRADC E +RS+KS QGV PFSGPEWP GMPQ EWSDWLGDFLPSRTMDS+QLR GGRGTERQEASTFLAYLRHQRDWLTAIE AR RTSRGVTAE QDSTAVSEGVDSVLRAVEDAIRVSGKD SEERLVTSRRWRRSS KTD
Sbjct: 1 MRALVVSCAFHSPC---------QRFASRAGVAIRPCSAALDGPGGPITEASVRKRSQRGSPVLLRDIFGTRSPWLGMKRLERAPLQRLDRLQEVADLALEDRVESGGGSFGCADIGTDHGLLAICLHANGANVIAGDRAAGPLNVARQNAKLYLRHAQQAPFSVLTTAAAERGAPAGKSECTGTPDATAETLLRPINEGSSGEGVGNDGAVADGVFPRLECRLGDGLAVLEQGEADTVCIAGVGVKTMIQILSTSTSDSSVDVTDSPESSHGRGVPALSRLGVRRLVLQPMDARLEYMRDLRVWLRENGWRITQEKIVSTLGKGGRHAFLTLRADCTETLRSLKSDQGVPPFSGPEWPTGMPQEEWSDWLGDFLPSRTMDSDQLRIGGRGTERQEASTFLAYLRHQRDWLTAIERARSRTSRGVTAERQDSTAVSEGVDSVLRAVEDAIRVSGKDGSEERLVTSRRWRRSSSKTD 467
BLAST of mRNA_Ecto-sp13_S_contig8662.20107.1 vs. uniprot
Match: A0A7S2SUM0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUM0_9STRA) HSP 1 Score: 74.3 bits (181), Expect = 7.710e-11 Identity = 101/367 (27.52%), Postives = 141/367 (38.42%), Query Frame = 1
Query: 364 RLQEVADLALEDRVESGGRSFSCADIGADHGLLAICLHAN---GANVIAGDRAAGPLNVARENVGLYLRHAQQAPFSVLATAAAERESPAGKSEYTGTPTAETLPRATNEGSSGDGVGHEGAVADGVVPRLECRLGDGLAVLEKGEADTVCIAGVGVKTMIQILSASASDSSGDAADSQESSYGRGASVLSRLGVRRLVLQPMDARLEYMRDLRVWLRGNGWRIAQEKIVSTLGKGGRHAFLTLRADCKEMRSIKSGQGVSPFSGPEWPAGMPQGEWSDWLGDFLPSRTMDSNQLRDGGRGTERQ-EASTFLAYLRHQRDWLTAIELARLRTSRGVT--AESQDSTAVSEGVDSVLRAVEDAIRVSG 1446
RLQ VA L D + ADIGADH LL + L A+ G +A DR PL R+ L+H +A G+V +L+ RLGDGL+ L +GE DTVC+AG+GV +++++L A GR L LGV LVLQP+ R + LR WL G+ I E I G ++T RA +S ++P GE GDF + + L G G+E EA +L Y+ H W E RG + A +D+T ++ + +L A+R G
Sbjct: 39 RLQAVASLVPRD-------CRAIADIGADHALLCMDLVASKRPGLRAVAIDRNRAPLEAGRKAA---LQH----------------------------------------------------LAPGMVKQLDFRLGDGLSPLSEGEVDTVCVAGMGVSSILRVLGAGGEP-------------GR----LGTLGVDTLVLQPVSPRPAALHGLRKWLDSQGYTIDAEVISRVKGL----FYITTRARRSAEKSF-----IAP------------GE-----GDFFLPQLIRRRAL--AGAGSEGDDEAENYLRYVSHHLRW----EKGNACRKRGASCPANKRDNTGQADFLVQLLEEEVIALRAGG 294
BLAST of mRNA_Ecto-sp13_S_contig8662.20107.1 vs. uniprot
Match: A0A5R9G1Y0_9BACL (SAM-dependent methyltransferase n=1 Tax=Paenibacillus antri TaxID=2582848 RepID=A0A5R9G1Y0_9BACL) HSP 1 Score: 67.8 bits (164), Expect = 5.670e-9 Identity = 69/238 (28.99%), Postives = 93/238 (39.08%), Query Frame = 1
Query: 349 LQRLDRLQEVADLALEDRVESGGRSFSCADIGADHGLLAICLHANGA--NVIAGDRAAGPLNVARENVGLYLRHAQQAPFSVLATAAAERESPAGKSEYTGTPTAETLPRATNEGSSGDGVGHEGAVADGVVPRLECRLGDGLAVLEKGEADTVCIAGVGVKTMIQILSASASDSSGDAADSQESSYGRGASVLSRLGVRRLVLQPMDARLEYMRDLRVWLRGNGWRIAQEKIVSTLG 1056
+Q RL VA+ AL GG + ADIG DH LL + L G N +AGD GP A V ++ G+ +++ R+GDGLAVLE E +T+ IAG+G T++ ILS GA+ L+ GVRRLVLQP R +R WL NGW++ QE ++ G
Sbjct: 2 IQLSKRLSAVAEYALP-----GG---ALADIGTDHALLPVSLVQRGIIPNAVAGDVHVGPARAAERQV----------------------------------------------------------LSAGLASKIDVRIGDGLAVLEPNEVETITIAGMGGGTIVDILSG-------------------GAAALA--GVRRLVLQPNVGE----RLVRAWLLENGWKLVQETLLEEDG 148
BLAST of mRNA_Ecto-sp13_S_contig8662.20107.1 vs. uniprot
Match: A0A3G1L2L5_9FIRM (Uncharacterized protein n=2 Tax=Candidatus Formimonas warabiya TaxID=1761012 RepID=A0A3G1L2L5_9FIRM) HSP 1 Score: 67.0 bits (162), Expect = 6.840e-9 Identity = 42/105 (40.00%), Postives = 59/105 (56.19%), Query Frame = 1
Query: 730 GVVPRLECRLGDGLAVLEKGEADTVCIAGVGVKTMIQILSASASDSSGDAADSQESSYGRGASVLSRLGVRRLVLQPMDARLEYMRDLRVWLRGNGWRIAQEKIV 1044
G+ +++ RLGDGL VL GEA+TVC+AG+G TMI IL + VL++ VRRL+LQPM + +R+WL +GWRI E++V
Sbjct: 62 GIHRKVDTRLGDGLQVLAPGEAETVCMAGMGSTTMINILE-------------------QAPHVLTQ--VRRLILQPMQG----IPRMRIWLAKHGWRIIDEELV 141
BLAST of mRNA_Ecto-sp13_S_contig8662.20107.1 vs. uniprot
Match: A0A0G4FDX8_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FDX8_VITBC) HSP 1 Score: 68.6 bits (166), Expect = 7.410e-9 Identity = 87/326 (26.69%), Postives = 125/326 (38.34%), Query Frame = 1
Query: 148 LLLVLQRFASRAGVVIRPCSAALDGPGEPITEASVRKRSQRGPPVLLRDIFGTRSPWLGMKRMERAPLQRLDRLQEVADLALEDRVESGGRSFSCADIGADHGLLAICLHANGA--NVIAGDRAAGPLNVARENVGLY-LRHAQQAPFSVLATAAAERESPAGKSEYTGTPTAETLPRATNEGSSGDGVGHEGAVADGVVPRLECRLGDGLAVLEKGEADTVCIAGVGVKTMIQILSASASDSSGDAADSQESSYGRGASVLSRLGVRRLVLQPMDARLEYMRDLRVWLRGNGWRIAQEKIVSTLGKGGRHAFLTLRADCKEMRSI 1116
+L++L RF R + P +A L GP S R V + L AP L + + L + + G + ADIG DHGLLA L +G N IA DR++ AR V + L HA ++ R GDGL L GE DTVC+AG+GV ++ IL ADS S R S+L L +R LV+QP RL + LR WL+ + W I +E++V G+ ++T++A + R++
Sbjct: 5 VLVLLFRFGGRQ--LPSPTTATLRGPPRGRYRTSAFSRRPMPVDVATPGLKAASRGGLDAGSSAEAPPLSLQEQRLKRFITLAELIPPGSPA---ADIGCDHGLLAAHLVHSGRCPNAIAIDRSSSSCEAARSTVERFALSHA-----------------------------------------------------------VDVRQGDGLTALSAGEVDTVCVAGMGVGGILDILKGPPQ------ADSDPLS--REDSLLRSLRIRTLVVQPQTPRLGSLYALRRWLQVHQWPINEERLVVI----GKRLYVTIKAVATQPRAV 254
BLAST of mRNA_Ecto-sp13_S_contig8662.20107.1 vs. uniprot
Match: A0A371PMF9_9BACL (tRNA (Adenine-N(1))-methyltransferase n=1 Tax=Paenibacillus paeoniae TaxID=2292705 RepID=A0A371PMF9_9BACL) HSP 1 Score: 66.6 bits (161), Expect = 1.440e-8 Identity = 72/234 (30.77%), Postives = 91/234 (38.89%), Query Frame = 1
Query: 364 RLQEVADLALEDRVESGGRSFSCADIGADHGLLAICLHANGA--NVIAGDRAAGPLNVARENVGLYLRHAQQAPFSVLATAAAERESPAGKSEYTGTPTAETLPRATNEGSSGDGVGHEGAVADGVVPRLECRLGDGLAVLEKGEADTVCIAGVGVKTMIQILSASASDSSGDAADSQESSYGRGASVLSRLGVRRLVLQPMDARLEYMRDLRVWLRGNGWRIAQEKIVSTLGK 1059
RLQ +AD + +G R ADIG+DH LL I L +G IAG+ GP AR+ GA G++ +LE R GDGL+VL+ GEAD+V IAG+G M IL A GD A E GV LVLQP D+R+WL G GW++ E I+ GK
Sbjct: 7 RLQRIADY-----ITAGNR---VADIGSDHALLPIYLLQSGRCPAAIAGELNEGPYKAARK----------------------------------------------------------GAADAGLLQKLEVRRGDGLSVLQGGEADSVTIAGMGGSLMSMILEA------GDKAGKLE-------------GVTELVLQPNVGE----DDVRLWLLGKGWQLLDESILEEDGK 151
BLAST of mRNA_Ecto-sp13_S_contig8662.20107.1 vs. uniprot
Match: A0A1K1PMV1_SELRU (tRNA (Adenine22-N1)-methyltransferase n=5 Tax=Selenomonas TaxID=970 RepID=A0A1K1PMV1_SELRU) HSP 1 Score: 65.9 bits (159), Expect = 1.770e-8 Identity = 70/235 (29.79%), Postives = 90/235 (38.30%), Query Frame = 1
Query: 361 DRLQEVADLALEDRVESGGRSFSCADIGADHGLLAICLHANGAN--VIAGDRAAGPLNVARENVGLYLRHAQQAPFSVLATAAAERESPAGKSEYTGTPTAETLPRATNEGSSGDGVGHEGAVADGVVPRLECRLGDGLAVLEKGEADTVCIAGVGVKTMIQILSASASDSSGDAADSQESSYGRGASVLSRLGVRRLVLQPMDARLEYMRDLRVWLRGNGWRIAQEKIVSTLGK 1059
DRLQ +AD V+ G R+ ADIG DHG LA+ L G V+AGD GP A+ V HE A+ + ++ R+GDGL VL+ GE DTVCIAG+G M IL AS + + L + LVLQPM+ E LR WL + W I E +V G+
Sbjct: 5 DRLQALADF-----VQEGSRA---ADIGTDHGYLAVALLQQGKADFVVAGDLNRGPYEAAKRTV------------------------------------------------------HENAIGE---EQISVRIGDGLKVLQPGEVDTVCIAGMGGILMNNILEASPE-------------------ITAEL--KTLVLQPMNGAPE----LREWLYEHDWHIVDENLVIDDGR 149
BLAST of mRNA_Ecto-sp13_S_contig8662.20107.1 vs. uniprot
Match: UPI0003F6AC88 (class I SAM-dependent methyltransferase n=1 Tax=Aneurinibacillus terranovensis TaxID=278991 RepID=UPI0003F6AC88) HSP 1 Score: 65.9 bits (159), Expect = 2.110e-8 Identity = 42/107 (39.25%), Postives = 53/107 (49.53%), Query Frame = 1
Query: 724 ADGVVPRLECRLGDGLAVLEKGEADTVCIAGVGVKTMIQILSASASDSSGDAADSQESSYGRGASVLSRLGVRRLVLQPMDARLEYMRDLRVWLRGNGWRIAQEKIV 1044
A G+ +E RLGDGLAV+ GEADTVCIAG+G ++ IL A L L ++ L+LQP A +R WL NGW I EKI+
Sbjct: 63 AAGLTENIEVRLGDGLAVVHPGEADTVCIAGMGGSLIVSILGAG----------------------LEGLNIKELILQPNVA----APLVRRWLMNNGWEITAEKII 143
BLAST of mRNA_Ecto-sp13_S_contig8662.20107.1 vs. uniprot
Match: A0A1I3CCE8_SELRU (tRNA (Adenine22-N1)-methyltransferase n=2 Tax=Selenomonas TaxID=970 RepID=A0A1I3CCE8_SELRU) HSP 1 Score: 65.5 bits (158), Expect = 2.390e-8 Identity = 79/240 (32.92%), Postives = 94/240 (39.17%), Query Frame = 1
Query: 349 LQRLDRLQEVADLALEDRVESGGRSFSCADIGADHGLLAICLHANG-AN-VIAGDRAAGPLNVARENVGLYLRHAQQAPFSVLATAAAERESPAGKSEYTGTPTAETLPRATNEGSSGDGVGHEGAV-ADGVVPRLECRLGDGLAVLEKGEADTVCIAGVGVKTMIQILSASASDSSGDAADSQESSYGRGASVLSRLGVRRLVLQPMDARLEYMRDLRVWLRGNGWRIAQEKIVSTLGK 1059
+Q DRLQ +AD V G R+ ADIG DHG LAI L G AN V+AGD GP A+ V HE A+ AD ++ RLG+GL VLE GE DTVCIAG+G M QIL S V+ +L LVLQPM+ E LR WL GW IA E + G+
Sbjct: 1 MQLDDRLQALADF-----VPVGCRA---ADIGTDHGYLAIDLIREGKANFVVAGDLNEGPYEAAKRTV------------------------------------------------------HENAMDAD----QISVRLGNGLQVLEPGEVDTVCIAGMGGVLMTQILEQSPD-------------------VVKKLTT--LVLQPMNGAPE----LRTWLYRQGWHIADEALAVADGR 149 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8662.20107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig8662.20107.1 >prot_Ecto-sp13_S_contig8662.20107.1 ID=prot_Ecto-sp13_S_contig8662.20107.1|Name=mRNA_Ecto-sp13_S_contig8662.20107.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=485bp MTIILVTARRTMRALVVSCAFHSPCASPWLLLVLQRFASRAGVVIRPCSAback to top mRNA from alignment at Ecto-sp13_S_contig8662:2582..5774+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig8662.20107.1 ID=mRNA_Ecto-sp13_S_contig8662.20107.1|Name=mRNA_Ecto-sp13_S_contig8662.20107.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3193bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8662:2582..5774+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8662:2582..5774+ >mRNA_Ecto-sp13_S_contig8662.20107.1 ID=mRNA_Ecto-sp13_S_contig8662.20107.1|Name=mRNA_Ecto-sp13_S_contig8662.20107.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1455bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8662:2582..5774+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |