mRNA_Ecto-sp13_S_contig8662.20107.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8662.20107.1
Unique NamemRNA_Ecto-sp13_S_contig8662.20107.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig8662.20107.1 vs. uniprot
Match: A0A6H5JHI9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHI9_9PHAE)

HSP 1 Score: 818 bits (2113), Expect = 7.110e-296
Identity = 431/475 (90.74%), Postives = 442/475 (93.05%), Query Frame = 1
Query:   94 MRALVVSCAFHSPCASPWLLLVLQRFASRAGVVIRPCSAALDGPGEPITEASVRKRSQRGPPVLLRDIFGTRSPWLGMKRMERAPLQRLDRLQEVADLALEDRVESGGRSFSCADIGADHGLLAICLHANGANVIAGDRAAGPLNVARENVGLYLRHAQQAPFSVLATAAAERESPAGKSEYTGTP--TAETLPRATNEGSSGDGVGHEGAVADGVVPRLECRLGDGLAVLEKGEADTVCIAGVGVKTMIQILSASASDSSGDAADSQESSYGRGASVLSRLGVRRLVLQPMDARLEYMRDLRVWLRGNGWRIAQEKIVSTLGKGGRHAFLTLRADCKEMRSIKSGQGVSPFSGPEWPAGMPQGEWSDWLGDFLPSRTMDSNQLRDGGRGTERQEASTFLAYLRHQRDWLTAIELARLRTSRGVTAESQDSTAVSEGVDSVLRAVEDAIRVSGKDESEERLVTSRRWRRSSGKTD 1512
            MRALVVSCAFHSPC SPW      RFASRAGVVIRPCSAALDGPG PITEASVRKRSQRGPPVLLRDIFGTRSPWLGMKR+ERAPLQRLDRLQEVADLALEDRVESGG SF CADIGADHGLLAICLHANGANVIAGDRAAGPLN+AREN  LYLR AQQAPFSVLATAAA+R +PAGKSEYT TP  TAETLP+  NEGSSGDGVG+EGAVA GVVPRLECRLGDGLAVLE+GEADTVCIAGVGVKT+IQILSAS SDSSGDAA+SQESS+GRGAS LSRLGVRRLVLQPMDARLEYMRDLRVWLRGNGWRIAQEKIVSTLGKGGRHAFLTLRADC EM S+KS QGVSPFSGPEWPAGMPQGEWSDWLGDFLPSRTMDSNQLRDGGR TERQEA TFLAYLRHQRDWLTAIE AR RTSR VTAESQDSTAVSE V SVLRAVEDAIRVSGKD SEERLVTSRRWRRSSGKTD
Sbjct:    1 MRALVVSCAFHSPCVSPW------RFASRAGVVIRPCSAALDGPGGPITEASVRKRSQRGPPVLLRDIFGTRSPWLGMKRLERAPLQRLDRLQEVADLALEDRVESGGGSFGCADIGADHGLLAICLHANGANVIAGDRAAGPLNIARENARLYLRRAQQAPFSVLATAAAQRIAPAGKSEYTRTPDPTAETLPQPINEGSSGDGVGNEGAVAHGVVPRLECRLGDGLAVLEEGEADTVCIAGVGVKTIIQILSASTSDSSGDAANSQESSHGRGASALSRLGVRRLVLQPMDARLEYMRDLRVWLRGNGWRIAQEKIVSTLGKGGRHAFLTLRADCMEMSSVKSDQGVSPFSGPEWPAGMPQGEWSDWLGDFLPSRTMDSNQLRDGGRDTERQEAFTFLAYLRHQRDWLTAIERARSRTSRRVTAESQDSTAVSEAVGSVLRAVEDAIRVSGKDGSEERLVTSRRWRRSSGKTD 469          
BLAST of mRNA_Ecto-sp13_S_contig8662.20107.1 vs. uniprot
Match: D7FWG2_ECTSI (SAM-dependent methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWG2_ECTSI)

HSP 1 Score: 780 bits (2015), Expect = 5.430e-281
Identity = 416/476 (87.39%), Postives = 427/476 (89.71%), Query Frame = 1
Query:   94 MRALVVSCAFHSPCASPWLLLVLQRFASRAGVVIRPCSAALDGPGEPITEASVRKRSQRGPPVLLRDIFGTRSPWLGMKRMERAPLQRLDRLQEVADLALEDRVESGGRSFSCADIGADHGLLAICLHANGANVIAGDRAAGPLNVARENVGLYLRHAQQAPFSVLATAAAERESPAGKSEYTGTP--TAETLPRATNEGSSGDGVGHEGAVADGVVPRLECRLGDGLAVLEKGEADTVCIAGVGVKTMIQILSASASDSSGDAADSQESSYGRGASVLSRLGVRRLVLQPMDARLEYMRDLRVWLRGNGWRIAQEKIVSTLGKGGRHAFLTLRADCKE-MRSIKSGQGVSPFSGPEWPAGMPQGEWSDWLGDFLPSRTMDSNQLRDGGRGTERQEASTFLAYLRHQRDWLTAIELARLRTSRGVTAESQDSTAVSEGVDSVLRAVEDAIRVSGKDESEERLVTSRRWRRSSGKTD 1512
            MRALVVSCAFHSPC         QRFASRAGV IRPCSAALDGPG PITEASVRKRSQRG PVLLRDIFGTRSPWLGMKR+ERAPLQRLDRLQEVADLALEDRVESGG SF CADIG DHGLLAICLHANGANVIAGDRAAGPLNVAR+N  LYLRHAQQAPFSVL TAAAER +PAGKSE TGTP  TAETL R  NEGSSG+GVG++GAVADGV PRLECRLGDGLAVLE+GEADTVCIAGVGVKTMIQILS S SDSS D  DS ESS+GRG   LSRLGVRRLVLQPMDARLEYMRDLRVWLR NGWRI QEKIVSTLGKGGRHAFLTLRADC E +RS+KS QGV PFSGPEWP GMPQ EWSDWLGDFLPSRTMDS+QLR GGRGTERQEASTFLAYLRHQRDWLTAIE AR RTSRGVTAE QDSTAVSEGVDSVLRAVEDAIRVSGKD SEERLVTSRRWRRSS KTD
Sbjct:    1 MRALVVSCAFHSPC---------QRFASRAGVAIRPCSAALDGPGGPITEASVRKRSQRGSPVLLRDIFGTRSPWLGMKRLERAPLQRLDRLQEVADLALEDRVESGGGSFGCADIGTDHGLLAICLHANGANVIAGDRAAGPLNVARQNAKLYLRHAQQAPFSVLTTAAAERGAPAGKSECTGTPDATAETLLRPINEGSSGEGVGNDGAVADGVFPRLECRLGDGLAVLEQGEADTVCIAGVGVKTMIQILSTSTSDSSVDVTDSPESSHGRGVPALSRLGVRRLVLQPMDARLEYMRDLRVWLRENGWRITQEKIVSTLGKGGRHAFLTLRADCTETLRSLKSDQGVPPFSGPEWPTGMPQEEWSDWLGDFLPSRTMDSDQLRIGGRGTERQEASTFLAYLRHQRDWLTAIERARSRTSRGVTAERQDSTAVSEGVDSVLRAVEDAIRVSGKDGSEERLVTSRRWRRSSSKTD 467          
BLAST of mRNA_Ecto-sp13_S_contig8662.20107.1 vs. uniprot
Match: A0A7S2SUM0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SUM0_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 7.710e-11
Identity = 101/367 (27.52%), Postives = 141/367 (38.42%), Query Frame = 1
Query:  364 RLQEVADLALEDRVESGGRSFSCADIGADHGLLAICLHAN---GANVIAGDRAAGPLNVARENVGLYLRHAQQAPFSVLATAAAERESPAGKSEYTGTPTAETLPRATNEGSSGDGVGHEGAVADGVVPRLECRLGDGLAVLEKGEADTVCIAGVGVKTMIQILSASASDSSGDAADSQESSYGRGASVLSRLGVRRLVLQPMDARLEYMRDLRVWLRGNGWRIAQEKIVSTLGKGGRHAFLTLRADCKEMRSIKSGQGVSPFSGPEWPAGMPQGEWSDWLGDFLPSRTMDSNQLRDGGRGTERQ-EASTFLAYLRHQRDWLTAIELARLRTSRGVT--AESQDSTAVSEGVDSVLRAVEDAIRVSG 1446
            RLQ VA L   D         + ADIGADH LL + L A+   G   +A DR   PL   R+     L+H                                                    +A G+V +L+ RLGDGL+ L +GE DTVC+AG+GV +++++L A                 GR    L  LGV  LVLQP+  R   +  LR WL   G+ I  E I    G      ++T RA     +S      ++P            GE     GDF   + +    L   G G+E   EA  +L Y+ H   W    E       RG +  A  +D+T  ++ +  +L     A+R  G
Sbjct:   39 RLQAVASLVPRD-------CRAIADIGADHALLCMDLVASKRPGLRAVAIDRNRAPLEAGRKAA---LQH----------------------------------------------------LAPGMVKQLDFRLGDGLSPLSEGEVDTVCVAGMGVSSILRVLGAGGEP-------------GR----LGTLGVDTLVLQPVSPRPAALHGLRKWLDSQGYTIDAEVISRVKGL----FYITTRARRSAEKSF-----IAP------------GE-----GDFFLPQLIRRRAL--AGAGSEGDDEAENYLRYVSHHLRW----EKGNACRKRGASCPANKRDNTGQADFLVQLLEEEVIALRAGG 294          
BLAST of mRNA_Ecto-sp13_S_contig8662.20107.1 vs. uniprot
Match: A0A5R9G1Y0_9BACL (SAM-dependent methyltransferase n=1 Tax=Paenibacillus antri TaxID=2582848 RepID=A0A5R9G1Y0_9BACL)

HSP 1 Score: 67.8 bits (164), Expect = 5.670e-9
Identity = 69/238 (28.99%), Postives = 93/238 (39.08%), Query Frame = 1
Query:  349 LQRLDRLQEVADLALEDRVESGGRSFSCADIGADHGLLAICLHANGA--NVIAGDRAAGPLNVARENVGLYLRHAQQAPFSVLATAAAERESPAGKSEYTGTPTAETLPRATNEGSSGDGVGHEGAVADGVVPRLECRLGDGLAVLEKGEADTVCIAGVGVKTMIQILSASASDSSGDAADSQESSYGRGASVLSRLGVRRLVLQPMDARLEYMRDLRVWLRGNGWRIAQEKIVSTLG 1056
            +Q   RL  VA+ AL      GG   + ADIG DH LL + L   G   N +AGD   GP   A   V                                                          ++ G+  +++ R+GDGLAVLE  E +T+ IAG+G  T++ ILS                    GA+ L+  GVRRLVLQP        R +R WL  NGW++ QE ++   G
Sbjct:    2 IQLSKRLSAVAEYALP-----GG---ALADIGTDHALLPVSLVQRGIIPNAVAGDVHVGPARAAERQV----------------------------------------------------------LSAGLASKIDVRIGDGLAVLEPNEVETITIAGMGGGTIVDILSG-------------------GAAALA--GVRRLVLQPNVGE----RLVRAWLLENGWKLVQETLLEEDG 148          
BLAST of mRNA_Ecto-sp13_S_contig8662.20107.1 vs. uniprot
Match: A0A3G1L2L5_9FIRM (Uncharacterized protein n=2 Tax=Candidatus Formimonas warabiya TaxID=1761012 RepID=A0A3G1L2L5_9FIRM)

HSP 1 Score: 67.0 bits (162), Expect = 6.840e-9
Identity = 42/105 (40.00%), Postives = 59/105 (56.19%), Query Frame = 1
Query:  730 GVVPRLECRLGDGLAVLEKGEADTVCIAGVGVKTMIQILSASASDSSGDAADSQESSYGRGASVLSRLGVRRLVLQPMDARLEYMRDLRVWLRGNGWRIAQEKIV 1044
            G+  +++ RLGDGL VL  GEA+TVC+AG+G  TMI IL                    +   VL++  VRRL+LQPM      +  +R+WL  +GWRI  E++V
Sbjct:   62 GIHRKVDTRLGDGLQVLAPGEAETVCMAGMGSTTMINILE-------------------QAPHVLTQ--VRRLILQPMQG----IPRMRIWLAKHGWRIIDEELV 141          
BLAST of mRNA_Ecto-sp13_S_contig8662.20107.1 vs. uniprot
Match: A0A0G4FDX8_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4FDX8_VITBC)

HSP 1 Score: 68.6 bits (166), Expect = 7.410e-9
Identity = 87/326 (26.69%), Postives = 125/326 (38.34%), Query Frame = 1
Query:  148 LLLVLQRFASRAGVVIRPCSAALDGPGEPITEASVRKRSQRGPPVLLRDIFGTRSPWLGMKRMERAPLQRLDRLQEVADLALEDRVESGGRSFSCADIGADHGLLAICLHANGA--NVIAGDRAAGPLNVARENVGLY-LRHAQQAPFSVLATAAAERESPAGKSEYTGTPTAETLPRATNEGSSGDGVGHEGAVADGVVPRLECRLGDGLAVLEKGEADTVCIAGVGVKTMIQILSASASDSSGDAADSQESSYGRGASVLSRLGVRRLVLQPMDARLEYMRDLRVWLRGNGWRIAQEKIVSTLGKGGRHAFLTLRADCKEMRSI 1116
            +L++L RF  R   +  P +A L GP       S   R      V    +       L       AP   L   +    + L + +  G  +   ADIG DHGLLA  L  +G   N IA DR++     AR  V  + L HA                                                           ++ R GDGL  L  GE DTVC+AG+GV  ++ IL           ADS   S  R  S+L  L +R LV+QP   RL  +  LR WL+ + W I +E++V      G+  ++T++A   + R++
Sbjct:    5 VLVLLFRFGGRQ--LPSPTTATLRGPPRGRYRTSAFSRRPMPVDVATPGLKAASRGGLDAGSSAEAPPLSLQEQRLKRFITLAELIPPGSPA---ADIGCDHGLLAAHLVHSGRCPNAIAIDRSSSSCEAARSTVERFALSHA-----------------------------------------------------------VDVRQGDGLTALSAGEVDTVCVAGMGVGGILDILKGPPQ------ADSDPLS--REDSLLRSLRIRTLVVQPQTPRLGSLYALRRWLQVHQWPINEERLVVI----GKRLYVTIKAVATQPRAV 254          
BLAST of mRNA_Ecto-sp13_S_contig8662.20107.1 vs. uniprot
Match: A0A371PMF9_9BACL (tRNA (Adenine-N(1))-methyltransferase n=1 Tax=Paenibacillus paeoniae TaxID=2292705 RepID=A0A371PMF9_9BACL)

HSP 1 Score: 66.6 bits (161), Expect = 1.440e-8
Identity = 72/234 (30.77%), Postives = 91/234 (38.89%), Query Frame = 1
Query:  364 RLQEVADLALEDRVESGGRSFSCADIGADHGLLAICLHANGA--NVIAGDRAAGPLNVARENVGLYLRHAQQAPFSVLATAAAERESPAGKSEYTGTPTAETLPRATNEGSSGDGVGHEGAVADGVVPRLECRLGDGLAVLEKGEADTVCIAGVGVKTMIQILSASASDSSGDAADSQESSYGRGASVLSRLGVRRLVLQPMDARLEYMRDLRVWLRGNGWRIAQEKIVSTLGK 1059
            RLQ +AD      + +G R    ADIG+DH LL I L  +G     IAG+   GP   AR+                                                          GA   G++ +LE R GDGL+VL+ GEAD+V IAG+G   M  IL A      GD A   E             GV  LVLQP         D+R+WL G GW++  E I+   GK
Sbjct:    7 RLQRIADY-----ITAGNR---VADIGSDHALLPIYLLQSGRCPAAIAGELNEGPYKAARK----------------------------------------------------------GAADAGLLQKLEVRRGDGLSVLQGGEADSVTIAGMGGSLMSMILEA------GDKAGKLE-------------GVTELVLQPNVGE----DDVRLWLLGKGWQLLDESILEEDGK 151          
BLAST of mRNA_Ecto-sp13_S_contig8662.20107.1 vs. uniprot
Match: A0A1K1PMV1_SELRU (tRNA (Adenine22-N1)-methyltransferase n=5 Tax=Selenomonas TaxID=970 RepID=A0A1K1PMV1_SELRU)

HSP 1 Score: 65.9 bits (159), Expect = 1.770e-8
Identity = 70/235 (29.79%), Postives = 90/235 (38.30%), Query Frame = 1
Query:  361 DRLQEVADLALEDRVESGGRSFSCADIGADHGLLAICLHANGAN--VIAGDRAAGPLNVARENVGLYLRHAQQAPFSVLATAAAERESPAGKSEYTGTPTAETLPRATNEGSSGDGVGHEGAVADGVVPRLECRLGDGLAVLEKGEADTVCIAGVGVKTMIQILSASASDSSGDAADSQESSYGRGASVLSRLGVRRLVLQPMDARLEYMRDLRVWLRGNGWRIAQEKIVSTLGK 1059
            DRLQ +AD      V+ G R+   ADIG DHG LA+ L   G    V+AGD   GP   A+  V                                                      HE A+ +    ++  R+GDGL VL+ GE DTVCIAG+G   M  IL AS                     + + L  + LVLQPM+   E    LR WL  + W I  E +V   G+
Sbjct:    5 DRLQALADF-----VQEGSRA---ADIGTDHGYLAVALLQQGKADFVVAGDLNRGPYEAAKRTV------------------------------------------------------HENAIGE---EQISVRIGDGLKVLQPGEVDTVCIAGMGGILMNNILEASPE-------------------ITAEL--KTLVLQPMNGAPE----LREWLYEHDWHIVDENLVIDDGR 149          
BLAST of mRNA_Ecto-sp13_S_contig8662.20107.1 vs. uniprot
Match: UPI0003F6AC88 (class I SAM-dependent methyltransferase n=1 Tax=Aneurinibacillus terranovensis TaxID=278991 RepID=UPI0003F6AC88)

HSP 1 Score: 65.9 bits (159), Expect = 2.110e-8
Identity = 42/107 (39.25%), Postives = 53/107 (49.53%), Query Frame = 1
Query:  724 ADGVVPRLECRLGDGLAVLEKGEADTVCIAGVGVKTMIQILSASASDSSGDAADSQESSYGRGASVLSRLGVRRLVLQPMDARLEYMRDLRVWLRGNGWRIAQEKIV 1044
            A G+   +E RLGDGLAV+  GEADTVCIAG+G   ++ IL A                       L  L ++ L+LQP  A       +R WL  NGW I  EKI+
Sbjct:   63 AAGLTENIEVRLGDGLAVVHPGEADTVCIAGMGGSLIVSILGAG----------------------LEGLNIKELILQPNVA----APLVRRWLMNNGWEITAEKII 143          
BLAST of mRNA_Ecto-sp13_S_contig8662.20107.1 vs. uniprot
Match: A0A1I3CCE8_SELRU (tRNA (Adenine22-N1)-methyltransferase n=2 Tax=Selenomonas TaxID=970 RepID=A0A1I3CCE8_SELRU)

HSP 1 Score: 65.5 bits (158), Expect = 2.390e-8
Identity = 79/240 (32.92%), Postives = 94/240 (39.17%), Query Frame = 1
Query:  349 LQRLDRLQEVADLALEDRVESGGRSFSCADIGADHGLLAICLHANG-AN-VIAGDRAAGPLNVARENVGLYLRHAQQAPFSVLATAAAERESPAGKSEYTGTPTAETLPRATNEGSSGDGVGHEGAV-ADGVVPRLECRLGDGLAVLEKGEADTVCIAGVGVKTMIQILSASASDSSGDAADSQESSYGRGASVLSRLGVRRLVLQPMDARLEYMRDLRVWLRGNGWRIAQEKIVSTLGK 1059
            +Q  DRLQ +AD      V  G R+   ADIG DHG LAI L   G AN V+AGD   GP   A+  V                                                      HE A+ AD    ++  RLG+GL VLE GE DTVCIAG+G   M QIL  S                     V+ +L    LVLQPM+   E    LR WL   GW IA E +    G+
Sbjct:    1 MQLDDRLQALADF-----VPVGCRA---ADIGTDHGYLAIDLIREGKANFVVAGDLNEGPYEAAKRTV------------------------------------------------------HENAMDAD----QISVRLGNGLQVLEPGEVDTVCIAGMGGVLMTQILEQSPD-------------------VVKKLTT--LVLQPMNGAPE----LRTWLYRQGWHIADEALAVADGR 149          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8662.20107.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5JHI9_9PHAE7.110e-29690.74Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FWG2_ECTSI5.430e-28187.39SAM-dependent methyltransferase n=1 Tax=Ectocarpus... [more]
A0A7S2SUM0_9STRA7.710e-1127.52Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A5R9G1Y0_9BACL5.670e-928.99SAM-dependent methyltransferase n=1 Tax=Paenibacil... [more]
A0A3G1L2L5_9FIRM6.840e-940.00Uncharacterized protein n=2 Tax=Candidatus Formimo... [more]
A0A0G4FDX8_VITBC7.410e-926.69Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A371PMF9_9BACL1.440e-830.77tRNA (Adenine-N(1))-methyltransferase n=1 Tax=Paen... [more]
A0A1K1PMV1_SELRU1.770e-829.79tRNA (Adenine22-N1)-methyltransferase n=5 Tax=Sele... [more]
UPI0003F6AC882.110e-839.25class I SAM-dependent methyltransferase n=1 Tax=An... [more]
A0A1I3CCE8_SELRU2.390e-832.92tRNA (Adenine22-N1)-methyltransferase n=2 Tax=Sele... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8662contigEcto-sp13_S_contig8662:2582..5774 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeBacteria
Stop1
Start1
Seed ortholog score66.6
Seed ortholog evalue3.6e-08
Seed eggNOG ortholog1262914.BN533_00496
Preferred nametrmK
Model size1681
KEGG koko:K06967
Hectar predicted targeting categorysignal peptide
GOsGO:0001510,GO:0003674,GO:0003824,GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0008168,GO:0008173,GO:0008175,GO:0008757,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0016426,GO:0016429,GO:0016740,GO:0016741,GO:0030488,GO:0032259,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0043414,GO:0044237,GO:0044238,GO:0044260,GO:0046483,GO:0071704,GO:0090304,GO:0140098,GO:0140101,GO:1901360
Exons5
EggNOG free text desc.Psort location Cytoplasmic, score 8.96
EggNOG OGs1V3I4@1239,4H4F1@909932,COG2384@1,COG2384@2
EC2.1.1.217
Cds size1455
COG Functional cat.S
Best tax levelNegativicutes
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko03016
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8662.20107.1prot_Ecto-sp13_S_contig8662.20107.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8662 2642..5608 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464138.3300943-UTR-Ecto-sp13_S_contig8662:2581..26411681464138.3300943-UTR-Ecto-sp13_S_contig8662:2581..2641Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8662 2582..2641 +
1681464138.4030888-UTR-Ecto-sp13_S_contig8662:5608..57741681464138.4030888-UTR-Ecto-sp13_S_contig8662:5608..5774Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8662 5609..5774 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464138.345833-CDS-Ecto-sp13_S_contig8662:2641..27281681464138.345833-CDS-Ecto-sp13_S_contig8662:2641..2728Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8662 2642..2728 +
1681464138.3568146-CDS-Ecto-sp13_S_contig8662:3247..35481681464138.3568146-CDS-Ecto-sp13_S_contig8662:3247..3548Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8662 3248..3548 +
1681464138.370142-CDS-Ecto-sp13_S_contig8662:3929..43011681464138.370142-CDS-Ecto-sp13_S_contig8662:3929..4301Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8662 3930..4301 +
1681464138.3803508-CDS-Ecto-sp13_S_contig8662:4616..48281681464138.3803508-CDS-Ecto-sp13_S_contig8662:4616..4828Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8662 4617..4828 +
1681464138.3937643-CDS-Ecto-sp13_S_contig8662:5125..56081681464138.3937643-CDS-Ecto-sp13_S_contig8662:5125..5608Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8662 5126..5608 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8662.20107.1

>prot_Ecto-sp13_S_contig8662.20107.1 ID=prot_Ecto-sp13_S_contig8662.20107.1|Name=mRNA_Ecto-sp13_S_contig8662.20107.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=485bp
MTIILVTARRTMRALVVSCAFHSPCASPWLLLVLQRFASRAGVVIRPCSA
ALDGPGEPITEASVRKRSQRGPPVLLRDIFGTRSPWLGMKRMERAPLQRL
DRLQEVADLALEDRVESGGRSFSCADIGADHGLLAICLHANGANVIAGDR
AAGPLNVARENVGLYLRHAQQAPFSVLATAAAERESPAGKSEYTGTPTAE
TLPRATNEGSSGDGVGHEGAVADGVVPRLECRLGDGLAVLEKGEADTVCI
AGVGVKTMIQILSASASDSSGDAADSQESSYGRGASVLSRLGVRRLVLQP
MDARLEYMRDLRVWLRGNGWRIAQEKIVSTLGKGGRHAFLTLRADCKEMR
SIKSGQGVSPFSGPEWPAGMPQGEWSDWLGDFLPSRTMDSNQLRDGGRGT
ERQEASTFLAYLRHQRDWLTAIELARLRTSRGVTAESQDSTAVSEGVDSV
LRAVEDAIRVSGKDESEERLVTSRRWRRSSGKTD*
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mRNA from alignment at Ecto-sp13_S_contig8662:2582..5774+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8662.20107.1 ID=mRNA_Ecto-sp13_S_contig8662.20107.1|Name=mRNA_Ecto-sp13_S_contig8662.20107.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3193bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8662:2582..5774+ (Ectocarpus species13 EcNAP12_S_4_19m)
GGGAGAATTCCAACAGTCCCGCCGCCGACAAACCGCCGCCGACAAACTTC TCTATCGCATATGACCATCATCCTTGTGACTGCAAGAAGGACTATGCGAG CTTTGGTGGTGTCTTGCGCGTTCCACTCCCCGTGCGCGAGTCCATGGGTA AGAATCCATCACTCCTCTAAGTACATGTTTCGAAGAACCACGGTGCACTC TTGCAGTTTTGCGACTGCTGTCCTCTCAGAGGATTTGCCCAAGGAGAGCA TGTGCATCTTTTGAACGAGCAACGGCGGTCATGATAGCACGCAATGGAAT CTCGCGAACATTAGGTCCGGCGTCTGACTGACAAAGGGCTAATACTGATT GTCCGCCCAGTGTATCTATTTCAGGTATCGGTTTGGTATCTAGACTAGTC ACTTTGTAGACTTGCGATTCGCCTTCCGTATCTGGCGCAATCCATGATGA GGTCTCAGCTTGAAATCCCACCAGCTGTAGATACTCACCTTACAACTTAG CACACACTTCCAGTTACTGCGTGACCGAGTCAAAGCGTGTGTTCATCTCG TCCGTTTCAGTGAGCGGTGACGGAATCCACGGCAACCCCTGGCTAGAGCT GGTGGCATTGAGTCTGAAATTCAAATATGCCGCGTTTGCCTCCTCCAATT TGGATCATGGGTGCAGTTGTTGCTCGTGCTGCAGCGATTTGCCTCACGGG CGGGAGTGGTCATTCGGCCGTGCTCGGCAGCGCTAGATGGCCCCGGAGAG CCCATCACTGAGGCGTCCGTGCGAAAACGATCGCAACGCGGGCCGCCGGT CTTGCTCAGGGACATCTTCGGCACGCGAAGCCCATGGCTGGGCATGAAGA GGATGGAGCGAGCTCCCTTACAGCGTCTTGATCGCCTACAAGAAGTAGCA GATCTAGCCCTCGAGGATAGGGTGGAGTCTGGTGGCCGATCTTTTAGCTG TGCGGACATAGGAGCAGGTGAGCATCGTGCTTGTGGGGAATGCTTTGGAC GTTTGCTGACTTTCGCCGTCCGTATCCTTGAGAGTTGCAGCTCACCGGTA GGTTTTGTCGATGTCCTGGATACGCTGCTCGTGCCGTTGGTGGTGCTTGA CGCGAGACCACGTACTTGATCAGGCCGTGCTACGAGAGGCTGTTTGGGCT GATGATTGAGTCTATTCACTTCGAACGCTCTTGTGTTTCTGCCGCGGTCT TGCCCCACACTCACATTCAACACCTTTGCAACAAGCCTCGTCGCCGATCT CGCCCATGCACAGAAGAAGTTCTTACTCCACCACGGTGGCTTATTGCTGA CCACGTTTTCATCGACTCTGCATCCCTCGTCGTGCGAGCTGCGTTCAGAT CACGGACTACTCGCGATCTGCCTGCACGCCAACGGTGCGAACGTCATCGC CGGCGATAGGGCGGCTGGGCCCCTGAATGTCGCGCGCGAAAACGTCGGGC TCTACCTGAGACACGCTCAGCAAGCACCTTTCTCCGTGCTCGCCACCGCG GCTGCAGAAAGAGAATCGCCCGCCGGTAAAAGCGAGTATACGGGGACCCC TACTGCTGAAACACTTCCCCGAGCAACAAATGAAGGTAGTAGCGGCGATG GGGTAGGGCATGAGGGGGCTGTCGCGGACGGGGTTGTCCCGCGCTTGGAG TGCCGTCTTGGTGATGGTTTAGCCGTGCTGGAGAAAGGGGAAGCGGACAC CGTGTGCATCGCGGGGGTAGGTGCGTATCTTGCTTGGGTTTCTGTGATTA CTGGTTAATGCTTTGATTTTGTTCGGTCTTCATTCTTGAGTATGCTTGTC GTTTTCTCCGTATCCTTTGGGCTTGGGCGGCCTCCACTCTTCGACAAATC GAAGAGAAGAGGTGGGTGCGCCAACCGTTTGTTACCTCGTTTGGCCAATG GATATCCGTAGCACACCATTTTCAAGCGGCCAGCAATGTCTACGTACCAT AATATCGTTGAAACAAGAGCGCTGTTTCCAAGGGTGTTGCATCATCTTTT GCGTTTTCGAGAAAACGCCCCGACCCTTTTTTCAGGTGTCAAGACGATGA TACAGATTCTCAGCGCGAGTGCGAGCGACAGCAGTGGCGACGCAGCGGAT AGCCAAGAATCTTCGTATGGGCGGGGAGCTTCTGTGCTGTCCCGCCTAGG AGTGCGGCGGCTTGTGCTGCAGCCGATGGACGCTCGACTGGAGTATATGC GCGACCTACGCGTGTGGTTACGGGGAAATGGTTGGCGAATAGCACAGGTG GGGTGCCCATCTGCGACTTTCAGGCAATGTTTGTACCTGATAAAAACATG GAATTGGCCTTCTGGTGTAGCCTTGCCATTGCATTCATGTACATGGAGTC AGCGAAAAGTACGGCCGAAAAGATCCAAGAGCTTTGCACTTTCTGCGTTT CCATGCCTTGGTCATCGACCTATCACTTTTCTCCACACGGCGCCTGTGGT TTCGGTAGACAAGCGCAGCCAACTGTCACCCAAATCACGTTCAAAAACGT TGCTGTTGCGCCTCCTACGCGAATGTCCCCCTTGCCATCTGCAGGAAAAA ATTGTGTCCACACTGGGCAAGGGGGGCCGACACGCTTTTCTGACGCTACG GGCCGACTGTAAGGAAATGCGCAGCATCAAAAGTGGCCAGGGGGTTTCAC CTTTCTCTGGACCAGAGTGGCCAGCAGGCATGCCACAGGGGGAGTGGTCA GACTGGCTTGGGGACTTTCTGCCTTCGCGGACCATGGACTCCAACCAGTT GCGCGACGGAGGGCGAGGTACAGAACGGCAAGAGGCGTCCACGTTTCTTG CGTACCTGAGGCACCAGCGAGACTGGCTGACGGCCATCGAGCTTGCACGT TTGCGGACGAGCCGCGGGGTAACTGCCGAGAGCCAGGACTCCACTGCTGT TTCGGAGGGCGTCGACAGCGTGTTGAGAGCCGTCGAAGATGCCATCAGAG TATCAGGGAAAGATGAGTCGGAAGAGAGGCTTGTTACGTCGCGACGGTGG AGGAGATCTTCTGGCAAAACCGATTAGTATGAAGTGGGAGCACACGGCCG TGAATGTGTTTGACTGCGACAACATAACGTGGGGTCTGGATTTGAAACAC CTACAACCATGCTCGAGGATCGACATGTGTACTTATGCAACGATATCTGC CGCGCCATTGTTTGCTTTCAGTCGACTAATGCGCGCTTCGAAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8662:2582..5774+

>mRNA_Ecto-sp13_S_contig8662.20107.1 ID=mRNA_Ecto-sp13_S_contig8662.20107.1|Name=mRNA_Ecto-sp13_S_contig8662.20107.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1455bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8662:2582..5774+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACCATCATCCTTGTGACTGCAAGAAGGACTATGCGAGCTTTGGTGGT
GTCTTGCGCGTTCCACTCCCCGTGCGCGAGTCCATGGTTGTTGCTCGTGC
TGCAGCGATTTGCCTCACGGGCGGGAGTGGTCATTCGGCCGTGCTCGGCA
GCGCTAGATGGCCCCGGAGAGCCCATCACTGAGGCGTCCGTGCGAAAACG
ATCGCAACGCGGGCCGCCGGTCTTGCTCAGGGACATCTTCGGCACGCGAA
GCCCATGGCTGGGCATGAAGAGGATGGAGCGAGCTCCCTTACAGCGTCTT
GATCGCCTACAAGAAGTAGCAGATCTAGCCCTCGAGGATAGGGTGGAGTC
TGGTGGCCGATCTTTTAGCTGTGCGGACATAGGAGCAGATCACGGACTAC
TCGCGATCTGCCTGCACGCCAACGGTGCGAACGTCATCGCCGGCGATAGG
GCGGCTGGGCCCCTGAATGTCGCGCGCGAAAACGTCGGGCTCTACCTGAG
ACACGCTCAGCAAGCACCTTTCTCCGTGCTCGCCACCGCGGCTGCAGAAA
GAGAATCGCCCGCCGGTAAAAGCGAGTATACGGGGACCCCTACTGCTGAA
ACACTTCCCCGAGCAACAAATGAAGGTAGTAGCGGCGATGGGGTAGGGCA
TGAGGGGGCTGTCGCGGACGGGGTTGTCCCGCGCTTGGAGTGCCGTCTTG
GTGATGGTTTAGCCGTGCTGGAGAAAGGGGAAGCGGACACCGTGTGCATC
GCGGGGGTAGGTGTCAAGACGATGATACAGATTCTCAGCGCGAGTGCGAG
CGACAGCAGTGGCGACGCAGCGGATAGCCAAGAATCTTCGTATGGGCGGG
GAGCTTCTGTGCTGTCCCGCCTAGGAGTGCGGCGGCTTGTGCTGCAGCCG
ATGGACGCTCGACTGGAGTATATGCGCGACCTACGCGTGTGGTTACGGGG
AAATGGTTGGCGAATAGCACAGGAAAAAATTGTGTCCACACTGGGCAAGG
GGGGCCGACACGCTTTTCTGACGCTACGGGCCGACTGTAAGGAAATGCGC
AGCATCAAAAGTGGCCAGGGGGTTTCACCTTTCTCTGGACCAGAGTGGCC
AGCAGGCATGCCACAGGGGGAGTGGTCAGACTGGCTTGGGGACTTTCTGC
CTTCGCGGACCATGGACTCCAACCAGTTGCGCGACGGAGGGCGAGGTACA
GAACGGCAAGAGGCGTCCACGTTTCTTGCGTACCTGAGGCACCAGCGAGA
CTGGCTGACGGCCATCGAGCTTGCACGTTTGCGGACGAGCCGCGGGGTAA
CTGCCGAGAGCCAGGACTCCACTGCTGTTTCGGAGGGCGTCGACAGCGTG
TTGAGAGCCGTCGAAGATGCCATCAGAGTATCAGGGAAAGATGAGTCGGA
AGAGAGGCTTGTTACGTCGCGACGGTGGAGGAGATCTTCTGGCAAAACCG
ATTAG
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