mRNA_Ecto-sp13_S_contig8662.20106.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8662.20106.1
Unique NamemRNA_Ecto-sp13_S_contig8662.20106.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8662.20106.1 vs. uniprot
Match: A0A6H5JIK3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JIK3_9PHAE)

HSP 1 Score: 167 bits (422), Expect = 8.560e-49
Identity = 94/104 (90.38%), Postives = 96/104 (92.31%), Query Frame = 1 
Query:    1 MNVEPAAADTLRSERPDEVQIGAVVLPLVLSAALVTVVVAYRCFANRLRRDRLALERREEVEEIRAARGREEAGGGGSPHRSAAMAGLGNDQYMSAYKNLLAQA 312
            MN E AAADTLRSE PDEVQIG +VLPLVLSAALVTVVVAYRCFANRLRRDRLALER+ EVEEIRAARGREEAG GGSPHRSAAMAGLG DQYMSAYK LLAQA
Sbjct:    1 MNAELAAADTLRSEGPDEVQIGVIVLPLVLSAALVTVVVAYRCFANRLRRDRLALERQAEVEEIRAARGREEAGEGGSPHRSAAMAGLGEDQYMSAYKKLLAQA 104
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8662.20106.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JIK3_9PHAE8.560e-4990.38Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8662contigEcto-sp13_S_contig8662:224..2495 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size905
Hectar predicted targeting categorysignal anchor
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-07_007400.1
Cds size315
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464138.278355-UTR-Ecto-sp13_S_contig8662:223..8131681464138.278355-UTR-Ecto-sp13_S_contig8662:223..813Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8662 224..813 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464138.2887132-CDS-Ecto-sp13_S_contig8662:813..9321681464138.2887132-CDS-Ecto-sp13_S_contig8662:813..932Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8662 814..932 -
1681464138.2994425-CDS-Ecto-sp13_S_contig8662:2299..24951681464138.2994425-CDS-Ecto-sp13_S_contig8662:2299..2495Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8662 2300..2495 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8662.20106.1prot_Ecto-sp13_S_contig8662.20106.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8662 814..2495 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8662.20106.1

>prot_Ecto-sp13_S_contig8662.20106.1 ID=prot_Ecto-sp13_S_contig8662.20106.1|Name=mRNA_Ecto-sp13_S_contig8662.20106.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=105bp
MNVEPAAADTLRSERPDEVQIGAVVLPLVLSAALVTVVVAYRCFANRLRR
DRLALERREEVEEIRAARGREEAGGGGSPHRSAAMAGLGNDQYMSAYKNL
LAQA*
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mRNA from alignment at Ecto-sp13_S_contig8662:224..2495-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8662.20106.1 ID=mRNA_Ecto-sp13_S_contig8662.20106.1|Name=mRNA_Ecto-sp13_S_contig8662.20106.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2272bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8662:224..2495- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAATGTCGAGCCGGCGGCGGCCGACACTCTACGAAGCGAACGTCCCGA
TGAAGTGCAGATAGGCGCGGTCGTTCTTCCCCTCGTGCTCTCTGCGGCGC
TGGTGACTGTGGTGGTGGCGTACCGATGTTTCGCCAACAGGCTCCGGCGA
GATCGCCTCGCCCTTGAGCGTCGAGAGGAGGTCGAAGAGATAAGAGGTAA
CAAACATTCGTAGGAGAGTTCAGTGTCGTTCGCTCTCGTGGTTTTCGCTA
TGCCCTTCCAGTTCATGCGCAACAATTTTGAATCTTTTGGCGTCCTGTTC
GACACGAAATGCACACTGCTGTACGAATAAGTTGCAGTTCTACAGCTTTT
TGGTGCGGGATGTTCCAGCAAAGCTGATGTTTCAAGTATTATCAACAGAT
CGGCAGCCCAACACGCTCCCTACCGTAGCAGGCTCGTCCTGATTCCTGCC
GTTAAGGAAGCACAGACATTACCGAAGACGACGTTTGAATTTGGCATTTA
TAATTGCGAGGTAGCAGTTCTGTATGCGAAATCCTAGCAGCAGTAACGGG
CGGCGGCGACGGCTTGTGTACCCGTGCGGCAACGTCCGCCGCGTCTATAT
ACACGTGTGTACTCTGCCCCATCAACACGGCCCGCCCCGTCGCGCCTGTG
TTATGTTTCTACGACGGGTTTGGCCTACCTTGTGATTTCCCACGCGTTGC
TACAATGTGTCTTTGTGTCCTACAGCACTGCCTGTGTTTACGGCGAGATC
ATGACCGTGTGCTTAGACAACCAAGATTTCTCACGGTTTCGCCGAGGAAA
GCACGCAAAATGTCTACAAAGCACGTCCTACACATACATGCAATTGGTAA
ACGTAAACCCCGGTCACATAACGGTGGCTAGGTGATTCAGTCGGAGTATG
CTGATAACCTGACGCTACAGCCGCAGGCCAATCTCTCCGGCGGAATGAAA
AATACTCGACAGCACATGAAAATTTAAGGGCGTGTTGCAGTAGTACACAT
ACATGAGAGACGGCAGTGCCGAACCCTTCTCGTGTCACGAATTGAAGGCT
AACATCACCGGAGGAACGCGGAAAATTCCTCCCGTGTACCCTGGCTATCC
TACCAAGCATTGTCTGAATTGTAAGGTACAGAATAGGGGGAGAAAAAGAA
AATATGGCCTACTCTCTACCGATGTCAGAAATGATGGCGTTATCTGAGTA
GAAAGCGCATACTCTTCCACAATCGTCGCCTCGTTTACTTGATGTTCAGC
CAAAGAAGAGGAGTTCGGAATGTGCCGCGCCTGTGCCTTCTTCCGCCGTT
CCTGATGAGGAGGACCGGATAATGCCCACCGTCGTCCTCTCTCAAGTAAC
AACGTAACACTTCTTTTTCCACAACAAAAACGTTTCTTACGTACCACGTA
AGTGTCAACATTGCCCTGGCTCAAATATCAGTGGCTGTTGTAGTTGCTAT
CACTTGCTGTAGCCACCAGGATCCAACACGCTTGTTTTCGTCTCTTGCTG
TAGGACTACGATCCAGCGTTCAACACTCGCTTTGCTTTCCCGGCCCCAAC
CCTTGTACCGCAGCTGCTCGAGGGAGAGAAGAAGCAGGGGGAGGAGGATC
ACCTCATCGAAGTGCTGCCATGGCGGGGCTGGGCAACGACCAGTATATGT
CGGCGTACAAGAATCTATTGGCCCAGGCCTGAACATCGAAAACGCCTGCC
CTTTCGTCAGCAAATAAAGCTTCCTATCGGTGTTGACGTACGCTACTGAT
GCATGCGGTACTTACTTTCAAGTGTGGTGTCTGGGCACAGCTATCCCTGA
TTTTTTTGCTGCAAAGCGTGCAGGTTTAACATATGCTCGGAGAACCGAGC
AAGGCGCAACTGTTGTACCGTACTGGTCTACTGGTTCTGTTTAACACGTT
TGCATCAATTGAATCGAACGTGGTGTGTGATGTTTTCTGCGAACCTCGGT
CGAGTTGAAAGCAAGGTCGCGTGTGTCCTCTTGCTCAGTAAACGCGGAGA
CCTATTCCGACGAGTAGTTTGCCTCCTCACCGAGCCTTTTTGTAGAAACT
TGGTCGGTAAATCGCCAAGGCAGTGTTGTTTTGTTTGCCCAAGGATTTCG
AGTGCCGGGAAGTGTACGCCCGAAGCGGGGCACGGGGATGCTAGTGGGGA
GTCCTTTTAGTGACCTTTAACGTGAGGCCCCAACACGTCGATCTCTTCGA
GGAAGCACGTAGACCCCTCAGAGGTATTCGCAAGGTGCTTATGTGGTGCG
TGCACCCGTTGCGCATTAGATA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8662:224..2495-

>mRNA_Ecto-sp13_S_contig8662.20106.1 ID=mRNA_Ecto-sp13_S_contig8662.20106.1|Name=mRNA_Ecto-sp13_S_contig8662.20106.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=315bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8662:224..2495- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAATGTCGAGCCGGCGGCGGCCGACACTCTACGAAGCGAACGTCCCGA
TGAAGTGCAGATAGGCGCGGTCGTTCTTCCCCTCGTGCTCTCTGCGGCGC
TGGTGACTGTGGTGGTGGCGTACCGATGTTTCGCCAACAGGCTCCGGCGA
GATCGCCTCGCCCTTGAGCGTCGAGAGGAGGTCGAAGAGATAAGAGCTGC
TCGAGGGAGAGAAGAAGCAGGGGGAGGAGGATCACCTCATCGAAGTGCTG
CCATGGCGGGGCTGGGCAACGACCAGTATATGTCGGCGTACAAGAATCTA
TTGGCCCAGGCCTGA
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