mRNA_Ecto-sp13_S_contig866.20104.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig866.20104.1
Unique NamemRNA_Ecto-sp13_S_contig866.20104.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig866.20104.1 vs. uniprot
Match: D7FQG6_ECTSI (Tellurite resistance methyltransferase, TehB, core n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FQG6_ECTSI)

HSP 1 Score: 60.8 bits (146), Expect = 2.060e-8
Identity = 26/26 (100.00%), Postives = 26/26 (100.00%), Query Frame = 3 
Query:    3 DGMRASIVHGHRFKCERLLPLLRDHV 80
            DGMRASIVHGHRFKCERLLPLLRDHV
Sbjct:  385 DGMRASIVHGHRFKCERLLPLLRDHV 410
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BLAST of mRNA_Ecto-sp13_S_contig866.20104.1 vs. uniprot
Match: A0A6H5L7P6_9PHAE (Rhodanese domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7P6_9PHAE)

HSP 1 Score: 58.5 bits (140), Expect = 1.330e-7
Identity = 25/26 (96.15%), Postives = 25/26 (96.15%), Query Frame = 3 
Query:    3 DGMRASIVHGHRFKCERLLPLLRDHV 80
            D MRASIVHGHRFKCERLLPLLRDHV
Sbjct:  384 DAMRASIVHGHRFKCERLLPLLRDHV 409
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig866.20104.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FQG6_ECTSI2.060e-8100.00Tellurite resistance methyltransferase, TehB, core... [more]
A0A6H5L7P6_9PHAE1.330e-796.15Rhodanese domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig866contigEcto-sp13_S_contig866:15354..15706 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size353
Hectar predicted targeting categoryother localisation
Exons1
Cds size345
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464137.8099234-UTR-Ecto-sp13_S_contig866:15353..153611681464137.8099234-UTR-Ecto-sp13_S_contig866:15353..15361Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig866 15354..15361 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464137.8270845-CDS-Ecto-sp13_S_contig866:15361..157061681464137.8270845-CDS-Ecto-sp13_S_contig866:15361..15706Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig866 15362..15706 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig866.20104.1prot_Ecto-sp13_S_contig866.20104.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig866 15362..15706 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig866.20104.1

>prot_Ecto-sp13_S_contig866.20104.1 ID=prot_Ecto-sp13_S_contig866.20104.1|Name=mRNA_Ecto-sp13_S_contig866.20104.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=115bp
MRASIVHGHRFKCERLLPLLRDHVRDYVGHKLALRLVDFSMSGPHTAEKS
YRGIYKPDCAVGGEQLGVLGLELKMYRGTAFCRVLCRACIMSLVAMHFSF
PVYGIPNVHAHVFS*
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mRNA from alignment at Ecto-sp13_S_contig866:15354..15706+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig866.20104.1 ID=mRNA_Ecto-sp13_S_contig866.20104.1|Name=mRNA_Ecto-sp13_S_contig866.20104.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=353bp|location=Sequence derived from alignment at Ecto-sp13_S_contig866:15354..15706+ (Ectocarpus species13 EcNAP12_S_4_19m)
TTGACGGAATGCGGGCTTCTATTGTCCACGGGCACCGGTTCAAGTGCGAG
CGTCTGTTGCCTCTACTTCGAGATCATGTGAGGGACTACGTGGGCCACAA
ATTGGCCCTTCGCCTCGTTGACTTTTCCATGTCCGGCCCACACACTGCTG
AAAAAAGTTATCGAGGCATCTACAAACCTGACTGCGCTGTCGGTGGTGAA
CAGCTTGGGGTCCTAGGACTGGAGCTGAAAATGTATCGTGGTACCGCTTT
TTGTCGCGTCCTTTGTCGAGCTTGTATCATGTCGTTGGTTGCCATGCACT
TCTCCTTTCCCGTTTACGGCATACCTAACGTCCATGCACACGTGTTCAGC
TAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig866:15354..15706+

>mRNA_Ecto-sp13_S_contig866.20104.1 ID=mRNA_Ecto-sp13_S_contig866.20104.1|Name=mRNA_Ecto-sp13_S_contig866.20104.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=345bp|location=Sequence derived from alignment at Ecto-sp13_S_contig866:15354..15706+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGGGCTTCTATTGTCCACGGGCACCGGTTCAAGTGCGAGCGTCTGTT
GCCTCTACTTCGAGATCATGTGAGGGACTACGTGGGCCACAAATTGGCCC
TTCGCCTCGTTGACTTTTCCATGTCCGGCCCACACACTGCTGAAAAAAGT
TATCGAGGCATCTACAAACCTGACTGCGCTGTCGGTGGTGAACAGCTTGG
GGTCCTAGGACTGGAGCTGAAAATGTATCGTGGTACCGCTTTTTGTCGCG
TCCTTTGTCGAGCTTGTATCATGTCGTTGGTTGCCATGCACTTCTCCTTT
CCCGTTTACGGCATACCTAACGTCCATGCACACGTGTTCAGCTAG
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