mRNA_Ecto-sp13_S_contig866.20102.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig866.20102.1 vs. uniprot
Match: D7FQG5_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQG5_ECTSI) HSP 1 Score: 1674 bits (4335), Expect = 0.000e+0 Identity = 961/1134 (84.74%), Postives = 975/1134 (85.98%), Query Frame = 3
Query: 78 MQRVPPAVLASYRALYVVLRGHAAAAEDEINRDIMRTVRGTTGLLLDLSSEDSRSDFAGSINRVLNALAHVDDMGYCQGQNYVVDVMMKAGLPERETFCLFLYLLRQGHFHGMYRKEVAMLAGYMDKLEGQLRGRLPDLAAHFEAEHYPPPLYALEWITTFFGLAAQPLVSLVALDLFLAGARNPVLRLCVSLLGEMEQGLLGLDQEGLLKDFRSRAVEVDAEGVIVRVLSDGGKRGSGGKCGGEGGSPSGGEGVEAKRSSEGGFADAGELGWSTGPDYLLVLRSRHCQTLGLVELREEAKSGLIVEHSSLQDALLAVTRSLGWDSLRTCWLETCLAARSDHERHTLASQALRFVIANGGHVKAASFMLGVGGADANEVDSRLLSPLHLVAMFNRPDIARVLLLCGASPRLVGGVTRAAAARGGKLWSPLEMAEEACTEGGALDDGERDASVAVGPAALYVLRGLVCLQCNLKLPRPERCGTCKLTFCKSCRGSHFCVGKLNLPRGVAEIGEGSGGGRTRPERGGRGSXXXXXXXXXXRARLESATLWELGGAIGDDWEELFSEGNANARGGVARGSGVEEDSWKPGGLRRSGPGTITSTEEIMEASVGSSCLSMSSSPVPWETMPSVLLGTWERRPLTTVPKDRHRLFDNSAAFVRACFPAQQTWLQHHMEEEMGLSLGGTLSRHGWGGPFKGLAGMDGEHFNPEIMQAASSTGLHRHMSWVMAESGVPWEANDDAWCCPECFILFSLNVFRHHCRGCGQVYCSAHAPPTPVPSDDRPLKLCWSCVLEGAVPLPASLLEEXXXXXXXXFDVFDENSILGMSPSSARGIAAEQELLSPTVAAMNLDAATAAAAAGAAYIAPPQHNPNYLRGQTGSEGGLGGSGVERKPRGHRAKAGSVGGSIEGGXXXXXXXXXXXXXXXXXXXXXXXXG-SGFLSALVSLIEVVASPTSPMRSRGXXXXXXXXXXKKPDVVPGRPPQSXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXENWRAGWSTLPPSGEVMAIDAQQQPSGGRGQEAELSPLRLRKEYDWXXXXXXXXXXXXXXXXXGGFNSHSTGGSLTESVDDGGGANGNAHGVADGAALFEKTPPPELGFPSERPWALGFGN 3476
MQRVPPAVLASYRALYVVLRGHAAAAEDEINRDIMRTVRGTTGLLLDLSSEDSRSDFAGSINRVLNALAHVD+MGYCQGQNYVVDVMMKAGLPERETFCLFLYLLRQGHFHGMYRKEVAMLAGYMDKLEGQLRGRLPDLAAHFEAEHYPPPLYALEWITTFFGLAAQPLVSLVALDLFLAGARNPVLRLCVSLLGEMEQGLLGLDQEGLLKDFRSRAV VDAEGVIVR LSDGGKRG GG SPSGGEGVEAKRSSEGG ADAGELGWSTGPDYLLVLRSRHCQTLGLVELREEAKSGLIVEHSSLQDALLAVTRSLGWDSLRTCWLETCLAARSDHERHTLASQALRFVIANGGHVKAASFMLGVGGADANEVDSRLLSPLHLVAMFNRPDIARVLL+CGASPRLVGGVTRAAAARGGKLWSPLEMAEEACTEGGALDDG A++ GP P R + G XXXXXXXXXXR RLESATLWELG AIGDDWEELF+EGNANARGGVARGSGVEEDSWKPGGLRR GPGTITSTEEIMEASVG SCLSMSSSPVPWETMPSVLLGTWERRP TTVPKDRHRLFDNSAAFVRACFPAQ TWLQHHMEEEMGLSLGGTLSRHGWGGPFKGL GMDGEHFNPEIMQAASSTGLHRHMSWVMAESGVPWEANDDAWCCPECFILFSLNVFRHHCRGCGQVYCSAH PPTPVPSDDRPLKLCWSCVLEGAVPLPASL+E XXXXXXXX VFDEN ILGMSPSSARGIAAEQELLSPTVA MNLDAATAAAAAGAAYIAPPQHNP+YLRGQTGSE KAGS+GGSIEGGXXXXXXXXXXXXXXXXXXXXXXX G SGFLSALVSLIEVVASPTSPMRSRGXXXXXXX KKPDVVPGRPPQS +NWRAGWSTLP SGE +AI+AQQQPSGGRG+EAE SPLRLRKEYD XXXXXXXXXXXXXXXXXGGFNSHSTGGSL ESVDDGGGANGNAHGVADGAA FE+TPPPELGFPSERPWALGFGN
Sbjct: 1 MQRVPPAVLASYRALYVVLRGHAAAAEDEINRDIMRTVRGTTGLLLDLSSEDSRSDFAGSINRVLNALAHVDNMGYCQGQNYVVDVMMKAGLPERETFCLFLYLLRQGHFHGMYRKEVAMLAGYMDKLEGQLRGRLPDLAAHFEAEHYPPPLYALEWITTFFGLAAQPLVSLVALDLFLAGARNPVLRLCVSLLGEMEQGLLGLDQEGLLKDFRSRAVGVDAEGVIVRALSDGGKRGGGGD------SPSGGEGVEAKRSSEGGVADAGELGWSTGPDYLLVLRSRHCQTLGLVELREEAKSGLIVEHSSLQDALLAVTRSLGWDSLRTCWLETCLAARSDHERHTLASQALRFVIANGGHVKAASFMLGVGGADANEVDSRLLSPLHLVAMFNRPDIARVLLMCGASPRLVGGVTRAAAARGGKLWSPLEMAEEACTEGGALDDG---AALGGGPI-------------RAAGSNPARAWELGGRGAANVEGGXXXXXXXXXXXXXXXX------------------XXXXXXXXXXRDRLESATLWELGSAIGDDWEELFNEGNANARGGVARGSGVEEDSWKPGGLRRPGPGTITSTEEIMEASVGPSCLSMSSSPVPWETMPSVLLGTWERRPQTTVPKDRHRLFDNSAAFVRACFPAQ-TWLQHHMEEEMGLSLGGTLSRHGWGGPFKGL-GMDGEHFNPEIMQAASSTGLHRHMSWVMAESGVPWEANDDAWCCPECFILFSLNVFRHHCRGCGQVYCSAHTPPTPVPSDDRPLKLCWSCVLEGAVPLPASLVEXXXXXXXXXXXVFDENPILGMSPSSARGIAAEQELLSPTVAVMNLDAATAAAAAGAAYIAPPQHNPDYLRGQTGSEXXXXXXXXXXXXXXXXXKAGSIGGSIEGGXXXXXXXXXXXXXXXXXXXXXXXVGGSGFLSALVSLIEVVASPTSPMRSRGXXXXXXX---KKPDVVPGRPPQSPAKPLAVAAETGVEDAGDAPGVGKGGG-------QNWRAGWSTLPASGEGLAIEAQQQPSGGRGEEAESSPLRLRKEYDXXXXXXXXXXXXXXXXXXGGFNSHSTGGSLAESVDDGGGANGNAHGVADGAASFEETPPPELGFPSERPWALGFGN 1082
BLAST of mRNA_Ecto-sp13_S_contig866.20102.1 vs. uniprot
Match: A0A7S0PBW2_CAFRO (Hypothetical protein (Fragment) n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0PBW2_CAFRO) HSP 1 Score: 74.7 bits (182), Expect = 4.950e-11 Identity = 47/158 (29.75%), Postives = 78/158 (49.37%), Query Frame = 3
Query: 255 SINRVLNALAHVDD-MGYCQGQNYVVDVMMKAGLPERETFCLFLYLLRQGHF--HGMYRKEVAMLAGYMDKLEGQLRGRLPDLAAHFEAEHYPPPLYALEWITTFFGLAAQPLVSLVALDLFLAGARNPVLRLCVSLLGEMEQGLLGLDQEGLLKDFR 719
S+ RVL A A DD +GYCQG ++ V++ PE + F + L++ + ++ + +A +EG LR P AAH EA+H P ++A W+ T F + V+ D +A PV+R+ V+++ + L+ EG+L R
Sbjct: 6 SLLRVLRAYAACDDEVGYCQGMAFLAGVLLSF-CPEEDAFLMLFQLMKSEPYMLRRLFLPGLRAVATQCRIIEGLLRDNAPRFAAHLEAQHVMPEMWATSWLMTAFSTSVPFAVTARVWDCLVAEGYKPVVRVAVAVMLRASPHVAKLELEGILMTMR 162
BLAST of mRNA_Ecto-sp13_S_contig866.20102.1 vs. uniprot
Match: A0A2D4BZI8_PYTIN (Rab-GAP TBC domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BZI8_PYTIN) HSP 1 Score: 73.2 bits (178), Expect = 1.510e-10 Identity = 50/166 (30.12%), Postives = 79/166 (47.59%), Query Frame = 3
Query: 258 INRVLNALAHVDD-MGYCQGQNYVVDVMMKAGLPERETFCLFLYLLRQGHFHGMYRKEVAMLAGYMDKLEGQLRGRLPDLAAHFEAEHYPPPLYALEWITTFFGLAAQ--PLVSLVALDLFLAGARNPVLRLCVSLLGEMEQGLLGLDQEGLLKDF---RSRAVEV 737
I RVL A + +GYCQG N++V ++M+ E + F LF+ L +Y + +L + E + P+L AHF+ E P +A W TFF P + + LDLF+ + + + +L E+E LL D E +L+ R+R VE+
Sbjct: 25 IRRVLRAYVMYNPRVGYCQGMNFLVRLLMEVTDDEADCFWLFVGLSEPELDRNLYEPGLTVLQPLFVRFEAFFSRQKPELFAHFQREGVPVAAFAARWFLTFFSTFETFGPTLVIRLLDLFVIDGWRVIFSMALVVLDELEHELLASDMEAILRLLQLPRARLVEL 190
BLAST of mRNA_Ecto-sp13_S_contig866.20102.1 vs. uniprot
Match: A0A5D6XPB5_9STRA (Rab-GAP TBC domain-containing protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XPB5_9STRA) HSP 1 Score: 76.6 bits (187), Expect = 2.440e-10 Identity = 58/186 (31.18%), Postives = 89/186 (47.85%), Query Frame = 3
Query: 168 NRDIM-RTVRGTTGLLLD-LSSEDSRSDFAGSINRVLNALAHVDD-MGYCQGQNYVVDVMMKAGLPERETFCLFLYLLRQGHFHGMYRKEVAMLAGYMDKLEGQLRGRLPDLAAHFEAEHYPPPLYALEWITTFFGLAAQ--PLVSLVALDLFLAGARNPVLRLCVSLLGEMEQGLLGLDQEGLLK 710
N+DI R V T LD L S +S I RVL A + +GYCQG N++V V+++ E + F LF+ L +Y +AML + K E + +P+L AHF+ E ++ W T F P + L LDLF+ +L + + +L E+ + LL + EG+L+
Sbjct: 450 NKDIYARDVSPTASSRLDALRSPTPKSAVEAKIRRVLRAYTMYNPRVGYCQGMNFLVRVLLEVTANEADVFWLFVGLSEPEINRNLYEPGLAMLQPLLAKFELLVSYHMPELHAHFQREGVHVAAFSTRWFMTLFTSFETFGPAMVLRVLDLFVIDGWRVLLSMGLVVLDELREALLAAELEGILR 635
BLAST of mRNA_Ecto-sp13_S_contig866.20102.1 vs. uniprot
Match: A0A5A8DQX2_CAFRO (Rab-GAP TBC domain-containing protein n=3 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8DQX2_CAFRO) HSP 1 Score: 74.7 bits (182), Expect = 2.570e-10 Identity = 47/158 (29.75%), Postives = 78/158 (49.37%), Query Frame = 3
Query: 255 SINRVLNALAHVDD-MGYCQGQNYVVDVMMKAGLPERETFCLFLYLLRQGHF--HGMYRKEVAMLAGYMDKLEGQLRGRLPDLAAHFEAEHYPPPLYALEWITTFFGLAAQPLVSLVALDLFLAGARNPVLRLCVSLLGEMEQGLLGLDQEGLLKDFR 719
S+ RVL A A DD +GYCQG ++ V++ PE + F + L++ + ++ + +A +EG LR P AAH EA+H P ++A W+ T F + V+ D +A PV+R+ V+++ + L+ EG+L R
Sbjct: 66 SLLRVLRAYAACDDEVGYCQGMAFLAGVLLSF-CPEEDAFLMLFQLMKSEPYMLRRLFLPGLRAVATQCRIIEGLLRDNAPRFAAHLEAQHVMPEMWATSWLMTAFSTSVPFAVTARVWDCLVAEGYKPVVRVAVAVMLRASPHVAKLELEGILMTMR 222
BLAST of mRNA_Ecto-sp13_S_contig866.20102.1 vs. uniprot
Match: A0A5A8CI63_CAFRO (Rab-GAP TBC domain-containing protein n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8CI63_CAFRO) HSP 1 Score: 74.7 bits (182), Expect = 7.350e-10 Identity = 47/158 (29.75%), Postives = 78/158 (49.37%), Query Frame = 3
Query: 255 SINRVLNALAHVDD-MGYCQGQNYVVDVMMKAGLPERETFCLFLYLLRQGHF--HGMYRKEVAMLAGYMDKLEGQLRGRLPDLAAHFEAEHYPPPLYALEWITTFFGLAAQPLVSLVALDLFLAGARNPVLRLCVSLLGEMEQGLLGLDQEGLLKDFR 719
S+ RVL A A DD +GYCQG ++ V++ PE + F + L++ + ++ + +A +EG LR P AAH EA+H P ++A W+ T F + V+ D +A PV+R+ V+++ + L+ EG+L R
Sbjct: 255 SLLRVLRAYAACDDEVGYCQGMAFLAGVLLSF-CPEEDAFLMLFQLMKSEPYMLRRLFLPGLRAVATQCRIIEGLLRDNAPRFAAHLEAQHVMPEMWATSWLMTAFSTSVPFAVTARVWDCLVAEGYKPVVRVAVAVMLRASPHVAKLELEGILMTMR 411
BLAST of mRNA_Ecto-sp13_S_contig866.20102.1 vs. uniprot
Match: E4XGA2_OIKDI (Rab-GAP TBC domain-containing protein n=2 Tax=Oikopleura dioica TaxID=34765 RepID=E4XGA2_OIKDI) HSP 1 Score: 73.6 bits (179), Expect = 2.600e-9 Identity = 54/171 (31.58%), Postives = 83/171 (48.54%), Query Frame = 3
Query: 255 SINRVLNALAHVD-DMGYCQGQNYVVDVMMKAGLPERETFCLFLYLLRQGHFH-------------GMYRKEVAMLAGYMDKLEGQLRGRLPDLAAHFEAEHYPPPLYALEWITTFFGLAAQPLVSLV--ALDLFLAGARNPVLRLCVSLLGEMEQGLLGLDQEGLLKDFR 719
++ RV A + D ++GYCQGQ+++V ++ +PE E F LF ++ + HF G+Y + L LE + LP L HF+ +Y+ +W T F A PL SLV +D FL N + RL +++L + LL D EG+L+ FR
Sbjct: 456 ALYRVCKAYSLYDSEVGYCQGQSFLVAALLTVQMPEEEAFALFTTIMHEYHFRFTTFSNQLVTGLRGLYLHSFSELRLRFWILEQLVESELPSLHTHFKDLGVEAHMYSSQWFLTLF-TAKFPL-SLVYHVIDWFLLEGPNVIYRLSLAMLRTWRRDLLSYDFEGVLRFFR 624
BLAST of mRNA_Ecto-sp13_S_contig866.20102.1 vs. uniprot
Match: A0A7S1WPF1_ALECA (Hypothetical protein (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1WPF1_ALECA) HSP 1 Score: 69.7 bits (169), Expect = 2.850e-9 Identity = 60/198 (30.30%), Postives = 93/198 (46.97%), Query Frame = 3
Query: 123 YVVLRGHAAAAEDEINRDIMRTVRGTTGLLLDLSSEDSRSDFAGSINRVLNALAH-VDDMGYCQGQNYVVDVMMKA----GLPERETF---CLFLYLLRQG--HFHGMYRKEVAMLAGYMDKLEGQLRGRLPDLAAHFEAEHYPPPLYALEWITTFFGLAAQPLVSLVALDLFLAGARNPVLRLCVSLLGEMEQGLLG 686
Y L AAA+ EI RDI RT G + + ++E ++ R+L A++H V+D+GYCQG N++ + M+ G E E C+ LLR G + G ++ + A D L L LPD+++ FE + YA +W T F + ++ D FL + R+ ++LL E LLG
Sbjct: 8 YAALAFTPAAADAEIRRDICRTF---PGCMSEAATE--------ALFRILRAVSHRVEDIGYCQGMNFIAGIFMRVFCEEGGREAEALVYQCVVSLLLRHGMNQYFGDRFPKLRLTALQFDCL---LEAFLPDVSSAFEVFNLSADFYATQWFLTLFSYSLPVQHAVCIWDNFLCRGMKFIHRVGLALLNEARPMLLG 191
BLAST of mRNA_Ecto-sp13_S_contig866.20102.1 vs. uniprot
Match: A0A2D4C8C0_PYTIN (Rab-GAP TBC domain-containing protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4C8C0_PYTIN) HSP 1 Score: 72.0 bits (175), Expect = 3.140e-9 Identity = 46/154 (29.87%), Postives = 73/154 (47.40%), Query Frame = 3
Query: 258 INRVLNALAHVDD-MGYCQGQNYVVDVMMKAGLPERETFCLFLYLLRQGHFHGMYRKEVAMLAGYMDKLEGQLRGRLPDLAAHFEAEHYPPPLYALEWITTFFGLAAQ--PLVSLVALDLFLAGARNPVLRLCVSLLGEMEQGLLGLDQEGLLK 710
I RVL A + +GYCQG N++V ++M+ E + F LF+ L +Y + +L + E + P+L AHF+ E P +A W TFF P + + LDLF+ + + + +L E+E LL D E +L+
Sbjct: 227 IRRVLRAYVMYNPRVGYCQGMNFLVRLLMEVTDDEADCFWLFVGLSEPELDRNLYEPGLTVLQPLFVRFEAFFSRQKPELFAHFQREGVPVAAFAARWFLTFFSTFETFGPTLVIRLLDLFVIDGWRVIFSMALVVLDELEHELLASDMEAILR 380
BLAST of mRNA_Ecto-sp13_S_contig866.20102.1 vs. uniprot
Match: A0A8K1C4S2_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C4S2_PYTOL) HSP 1 Score: 72.8 bits (177), Expect = 3.570e-9 Identity = 45/166 (27.11%), Postives = 79/166 (47.59%), Query Frame = 3
Query: 222 SSEDSRSDFAGSINRVLNALAHVDD-MGYCQGQNYVVDVMMKAGLPERETFCLFLYLLRQGHFHGMYRKEVAMLAGYMDKLEGQLRGRLPDLAAHFEAEHYPPPLYALEWITTFFGLAAQ--PLVSLVALDLFLAGARNPVLRLCVSLLGEMEQGLLGLDQEGLLK 710
S++ R++ I RVL + + +GYCQG N++V ++++ + E + F LF+ L + +Y +A+L + E + P+L HF+ E P Y W T F P + + LDLF+ + + + +L E+E LL D E +L+
Sbjct: 429 SAKGKRTELESKIRRVLRSYVMYNPRVGYCQGMNFLVRLLIEVAIDEADCFWLFVGLSEPENDRNLYEPGLAVLQPLFVRFEECFAKQKPELYGHFQQEGVPVAAYTARWFLTLFSKFETFGPTLVIRILDLFVIDGWRTIFSMGLVVLDELESELLQADMETILQ 594 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig866.20102.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 22
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig866.20102.1 >prot_Ecto-sp13_S_contig866.20102.1 ID=prot_Ecto-sp13_S_contig866.20102.1|Name=mRNA_Ecto-sp13_S_contig866.20102.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=1134bp MQRVPPAVLASYRALYVVLRGHAAAAEDEINRDIMRTVRGTTGLLLDLSSback to top mRNA from alignment at Ecto-sp13_S_contig866:2702..9400- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig866.20102.1 ID=mRNA_Ecto-sp13_S_contig866.20102.1|Name=mRNA_Ecto-sp13_S_contig866.20102.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=6699bp|location=Sequence derived from alignment at Ecto-sp13_S_contig866:2702..9400- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig866:2702..9400- >mRNA_Ecto-sp13_S_contig866.20102.1 ID=mRNA_Ecto-sp13_S_contig866.20102.1|Name=mRNA_Ecto-sp13_S_contig866.20102.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=3402bp|location=Sequence derived from alignment at Ecto-sp13_S_contig866:2702..9400- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |