mRNA_Ecto-sp13_S_contig866.20101.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig866.20101.1
Unique NamemRNA_Ecto-sp13_S_contig866.20101.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig866.20101.1 vs. uniprot
Match: A0A7S3H4V8_9STRA (Cilia- and flagella-associated protein 52 (Fragment) n=2 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3H4V8_9STRA)

HSP 1 Score: 79.7 bits (195), Expect = 3.340e-15
Identity = 38/59 (64.41%), Postives = 44/59 (74.58%), Query Frame = 1 
Query:    7 LACTSNETNKITYWDAYDGTAIRVIEGGDEEMNTLDVEPSGEAFVSGGDDGLVKVWHYD 183
            L C SN  +KITYWDA DG  IRVIEGG++ M TLD+ PSGE FVSG  D  +K+WHYD
Sbjct:  541 LTCGSN--HKITYWDAADGQTIRVIEGGEDGMTTLDILPSGEFFVSGSKDKTLKIWHYD 597
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BLAST of mRNA_Ecto-sp13_S_contig866.20101.1 vs. uniprot
Match: D7FQG4_ECTSI (Cilia- and flagella-associated protein 52 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQG4_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 6.310e-15
Identity = 38/44 (86.36%), Postives = 40/44 (90.91%), Query Frame = 1 
Query:    7 LACTSNETNKITYWDAYDGTAIRVIEGGDEEMNTLDVEPSGEAF 138
            + C SN  +KITYWDAYDGTAIRVIEGGDEEMNTLDVEPSGEAF
Sbjct:  547 ITCGSN--HKITYWDAYDGTAIRVIEGGDEEMNTLDVEPSGEAF 588
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BLAST of mRNA_Ecto-sp13_S_contig866.20101.1 vs. uniprot
Match: A0A7S0Z0E4_9CRYP (Cilia- and flagella-associated protein 52 n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0Z0E4_9CRYP)

HSP 1 Score: 73.2 bits (178), Expect = 3.700e-14
Identity = 34/57 (59.65%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:   16 TSNETNKITYWDAYDGTAIRVIEGGDE-EMNTLDVEPSGEAFVSGGDDGLVKVWHYD 183
            T+    KIT WDAYDG+AIR+++G    E+NTLD+  SG+ FVSGG D LVK+WHYD
Sbjct:   50 TTGTDRKITNWDAYDGSAIRIVDGSSAAEVNTLDIAGSGDFFVSGGGDKLVKLWHYD 106
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BLAST of mRNA_Ecto-sp13_S_contig866.20101.1 vs. uniprot
Match: A0A7S2TAK1_9CHLO (Cilia- and flagella-associated protein 52 n=1 Tax=Chloropicon roscoffensis TaxID=1461544 RepID=A0A7S2TAK1_9CHLO)

HSP 1 Score: 73.9 bits (180), Expect = 1.260e-13
Identity = 35/57 (61.40%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:   16 TSNETNKITYWDAYDGTAIRVIEGG-DEEMNTLDVEPSGEAFVSGGDDGLVKVWHYD 183
            T+    KITYWDAYDG AIRVI+G   + MNTLD+ P G   VSGG D LVK+W YD
Sbjct:  160 TTGTDRKITYWDAYDGQAIRVIDGSLTDAMNTLDISPEGNVLVSGGSDKLVKIWGYD 216
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BLAST of mRNA_Ecto-sp13_S_contig866.20101.1 vs. uniprot
Match: A0A7S4NYZ6_GUITH (Cilia- and flagella-associated protein 52 n=1 Tax=Guillardia theta TaxID=55529 RepID=A0A7S4NYZ6_GUITH)

HSP 1 Score: 72.4 bits (176), Expect = 1.470e-13
Identity = 33/57 (57.89%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:   16 TSNETNKITYWDAYDGTAIRVIEGGDE-EMNTLDVEPSGEAFVSGGDDGLVKVWHYD 183
            T+    KIT WDAYDG+AIR+++G    E+NTLD+  SGE FVSGG D ++K+WHYD
Sbjct:   84 TTGTDRKITNWDAYDGSAIRIVDGSTSAEVNTLDIAGSGEFFVSGGGDKILKLWHYD 140
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BLAST of mRNA_Ecto-sp13_S_contig866.20101.1 vs. uniprot
Match: A0A5B8MPK0_9CHLO (Cilia- and flagella-associated protein 52 n=1 Tax=Chloropicon primus TaxID=1764295 RepID=A0A5B8MPK0_9CHLO)

HSP 1 Score: 73.9 bits (180), Expect = 3.570e-13
Identity = 35/57 (61.40%), Postives = 40/57 (70.18%), Query Frame = 1 
Query:   16 TSNETNKITYWDAYDGTAIRVIEGG-DEEMNTLDVEPSGEAFVSGGDDGLVKVWHYD 183
            T+    KITYWDAYDG AIRVI+G   + MNTLD+ P G   VSGG D LVK+W YD
Sbjct:  524 TTGTDRKITYWDAYDGQAIRVIDGSLTDAMNTLDISPEGNVLVSGGSDKLVKIWGYD 580
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BLAST of mRNA_Ecto-sp13_S_contig866.20101.1 vs. uniprot
Match: A0A6U4NWC7_HEMAN (Cilia- and flagella-associated protein 52 n=2 Tax=Hemiselmis TaxID=77924 RepID=A0A6U4NWC7_HEMAN)

HSP 1 Score: 73.2 bits (178), Expect = 6.640e-13
Identity = 34/57 (59.65%), Postives = 43/57 (75.44%), Query Frame = 1 
Query:   16 TSNETNKITYWDAYDGTAIRVIEGGDE-EMNTLDVEPSGEAFVSGGDDGLVKVWHYD 183
            T+    KIT WDAYDG+AIR+++G    E+NTLD+  SG+ FVSGG D LVK+WHYD
Sbjct:  507 TTGTDRKITNWDAYDGSAIRIVDGSSAAEVNTLDIAGSGDFFVSGGGDKLVKLWHYD 563
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BLAST of mRNA_Ecto-sp13_S_contig866.20101.1 vs. uniprot
Match: A0A7S0MDN7_9CRYP (Hypothetical protein n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0MDN7_9CRYP)

HSP 1 Score: 72.4 bits (176), Expect = 1.240e-12
Identity = 34/57 (59.65%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:   16 TSNETNKITYWDAYDGTAIRVIEGG-DEEMNTLDVEPSGEAFVSGGDDGLVKVWHYD 183
            T+    KIT WDAYDGTAIR+++G    E++TLD+  SG  FVSGG D LVK+WHYD
Sbjct:  509 TTGTDRKITNWDAYDGTAIRIVDGSASAEVSTLDISASGNFFVSGGADKLVKLWHYD 565
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BLAST of mRNA_Ecto-sp13_S_contig866.20101.1 vs. uniprot
Match: D8TPH8_VOLCA (Cilia- and flagella-associated protein 52 n=4 Tax=Volvocaceae TaxID=3065 RepID=D8TPH8_VOLCA)

HSP 1 Score: 72.4 bits (176), Expect = 1.240e-12
Identity = 35/57 (61.40%), Postives = 42/57 (73.68%), Query Frame = 1 
Query:   16 TSNETNKITYWDAYDGTAIRVIEGGD-EEMNTLDVEPSGEAFVSGGDDGLVKVWHYD 183
            T+    KITYWDAYDG AIR+I+G D +E+N L V+  GEA VSGG D LVK+W YD
Sbjct:  513 TTGTDRKITYWDAYDGNAIRIIDGSDGDEVNALAVDRDGEAIVSGGGDKLVKLWGYD 569
[Close]
BLAST of mRNA_Ecto-sp13_S_contig866.20101.1 vs. uniprot
Match: A0A7S1U044_9STRA (Cilia- and flagella-associated protein 52 n=2 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1U044_9STRA)

HSP 1 Score: 72.4 bits (176), Expect = 1.240e-12
Identity = 35/59 (59.32%), Postives = 43/59 (72.88%), Query Frame = 1 
Query:    7 LACTSNETNKITYWDAYDGTAIRVIEGGDEEMNTLDVEPSGEAFVSGGDDGLVKVWHYD 183
            L C++N   KITYWDA  G  IRV++  D E+  +DV+ +GEAFVSGG D LVKVWHYD
Sbjct:  521 LTCSANY--KITYWDAIHGDMIRVLDAADAEVCAVDVDEAGEAFVSGGADKLVKVWHYD 577
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig866.20101.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7S3H4V8_9STRA3.340e-1564.41Cilia- and flagella-associated protein 52 (Fragmen... [more]
D7FQG4_ECTSI6.310e-1586.36Cilia- and flagella-associated protein 52 n=2 Tax=... [more]
A0A7S0Z0E4_9CRYP3.700e-1459.65Cilia- and flagella-associated protein 52 n=1 Tax=... [more]
A0A7S2TAK1_9CHLO1.260e-1361.40Cilia- and flagella-associated protein 52 n=1 Tax=... [more]
A0A7S4NYZ6_GUITH1.470e-1357.89Cilia- and flagella-associated protein 52 n=1 Tax=... [more]
A0A5B8MPK0_9CHLO3.570e-1361.40Cilia- and flagella-associated protein 52 n=1 Tax=... [more]
A0A6U4NWC7_HEMAN6.640e-1359.65Cilia- and flagella-associated protein 52 n=2 Tax=... [more]
A0A7S0MDN7_9CRYP1.240e-1259.65Hypothetical protein n=1 Tax=Cryptomonas curvata T... [more]
D8TPH8_VOLCA1.240e-1261.40Cilia- and flagella-associated protein 52 n=4 Tax=... [more]
A0A7S1U044_9STRA1.240e-1259.32Cilia- and flagella-associated protein 52 n=2 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig866contigEcto-sp13_S_contig866:72..1045 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score80.1
Seed ortholog evalue6.8e-13
Seed eggNOG ortholog2880.D7FQG4
Preferred nameWDR16
Model size315
Hectar predicted targeting categoryother localisation
Exons2
EggNOG free text desc.WD repeat-containing protein
EggNOG OGsKOG0266@1,KOG0266@2759
Ec32 ortholog descriptionflagellar associated protein putative: flagellar associated protein
Ec32 orthologEc-01_006190.1
Cds size315
COG Functional cat.B
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464137.8699198-CDS-Ecto-sp13_S_contig866:71..2391681464137.8699198-CDS-Ecto-sp13_S_contig866:71..239Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig866 72..239 +
1681464137.8818624-CDS-Ecto-sp13_S_contig866:898..10451681464137.8818624-CDS-Ecto-sp13_S_contig866:898..1045Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig866 899..1045 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig866.20101.1prot_Ecto-sp13_S_contig866.20101.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig866 72..1045 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig866.20101.1

>prot_Ecto-sp13_S_contig866.20101.1 ID=prot_Ecto-sp13_S_contig866.20101.1|Name=mRNA_Ecto-sp13_S_contig866.20101.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=105bp
DGLACTSNETNKITYWDAYDGTAIRVIEGGDEEMNTLDVEPSGEAFVSGG
DDGLVKVWHYDDGLTMSVGTGHSGSVAAVRISPDRKIIVSVGSEGGIFIW
GMLPP
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mRNA from alignment at Ecto-sp13_S_contig866:72..1045+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig866.20101.1 ID=mRNA_Ecto-sp13_S_contig866.20101.1|Name=mRNA_Ecto-sp13_S_contig866.20101.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=974bp|location=Sequence derived from alignment at Ecto-sp13_S_contig866:72..1045+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACGGTCTCGCGTGCACGTCGAACGAAACGAACAAGATCACGTACTGGGA
CGCATACGACGGCACCGCCATCCGCGTGATCGAAGGGGGTGACGAGGAGA
TGAACACCCTCGACGTGGAGCCTTCGGGGGAGGCGTTCGTGTCCGGCGGG
GACGACGGGCTTGTTAAGGTACCGTGCGAAAACATCCGAGACAAATACAA
TACAGCTAGTCTAGGCTAGATGCGGGACTAGATACGGGACAATTGCAAGA
CAGGCGGCATTTCTTAATCACACGCCATCGAAGTAGAAGGGAGAGGGTTG
TGCCAAGGCAAGACACAGTTGGCGTTGATGTCGGTGGGGGTCAGCTTAGA
CCAGGCAAGCCTGACACCAGCTTGAATAGAACGGAACTTTTCCAAAACGT
TGGCTCCGTTTGGGACAGGGTTGGGGCTCACAGTTGTTTTGGGTAGCTTT
TGTCCGGTAGATTCCTCGGCCGGACTATTATTTTTGTCCTCTCGAGCCTA
TCCGGAATGGGCATTCGTTCGTGTCTGGCGGAGATGCAGGTAGGAAAGCA
CGGTAATATTACCAGGACTATATTTGATCCGTCGGTCTTACGGTTTGTTT
TCGCGTTCCAGATTCGTCGAGTCCGTGTCAATCGACACTGGCAAGCTCCG
CGCTCGTCGAGAGGCCTCTATGTCTAATCCTGAAGGCTTGCCTGTCTCTA
CGTGGTGCTCCCGCGAAAAAATACGCGCTTGGTGTAAGGCTTTCAGTACA
CAACAACTGATCTGTCCAACAAACGACATCCGCGTGACCCCGCTCGATTG
CGTTCGTTGTCGCATAACTATGAATAGGTGTGGCACTACGACGACGGCCT
GACGATGAGCGTCGGCACGGGGCACAGCGGAAGCGTGGCCGCGGTGCGAA
TCTCGCCCGACCGCAAGATCATCGTCTCGGTCGGGTCAGAGGGTGGCATA
TTCATCTGGGGGATGCTACCGCCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig866:72..1045+

>mRNA_Ecto-sp13_S_contig866.20101.1 ID=mRNA_Ecto-sp13_S_contig866.20101.1|Name=mRNA_Ecto-sp13_S_contig866.20101.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=315bp|location=Sequence derived from alignment at Ecto-sp13_S_contig866:72..1045+ (Ectocarpus species13 EcNAP12_S_4_19m)
GACGGTCTCGCGTGCACGTCGAACGAAACGAACAAGATCACGTACTGGGA
CGCATACGACGGCACCGCCATCCGCGTGATCGAAGGGGGTGACGAGGAGA
TGAACACCCTCGACGTGGAGCCTTCGGGGGAGGCGTTCGTGTCCGGCGGG
GACGACGGGCTTGTTAAGGTGTGGCACTACGACGACGGCCTGACGATGAG
CGTCGGCACGGGGCACAGCGGAAGCGTGGCCGCGGTGCGAATCTCGCCCG
ACCGCAAGATCATCGTCTCGGTCGGGTCAGAGGGTGGCATATTCATCTGG
GGGATGCTACCGCCG
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