mRNA_Ecto-sp13_S_contig8642.20084.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8642.20084.1
Unique NamemRNA_Ecto-sp13_S_contig8642.20084.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig8642.20084.1 vs. uniprot
Match: A0A6H5L612_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L612_9PHAE)

HSP 1 Score: 278 bits (710), Expect = 1.030e-76
Identity = 320/764 (41.88%), Postives = 361/764 (47.25%), Query Frame = 1
Query:    1 VMYMDADGGGEGHGGTRAILALSEGFGIDLAMGRAANVLPEYVDGATMKCAAIHKDGHWILVALDGKDDDEATKVGSESDVLDFIEERVNSSLAELATRTDDDPASTVD-------GTKVCEGHFPHDIGVGIDXXXXXXXXXXXXXSSRGDVKPDPIPQP-SGPTSSRTSWASHPWEDDEHWDDYQNYLDHNSF------FIEEEG----------------------------EEVCLFPSVWREWTRGPEXXXXXXXXXXXXXRTRSRQHGKVRGSRGRRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPRTCFLRG---------GAYPEQDEQLTG--DGTEQETGQRPEATRA---PASPAFPPTGKAQPFVASSLVGGRTTKTLMAVQAYWMHLSMSDAIEPKPARPTSLRSTDLRGPRGAHARPPASR---------VAGDGDVDAADGGDTGVAPMEEGDDSDGFGDAGAGVGGDSWRDSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKLGRTKVRLEG-GTIQKVA--------SFRSGWYILED----------------------GEKIRQWELLS--------------TRHGKGVTLEQDVARYIRQL-AAVHTTTLSQIVPYISGGDTTMTDGMLLDVDGGTERAAATGDKIDHVSNLPLDDLEAIKNKTERVRQLSLEIFTKASVQDLLP 1959
            V+YMDADGGG GHGGTRAILALSEGFGIDLAMGRAANVLPEYVD ATMKCAAIH+DGHW LVAL GKDDDEAT+VGSESDVLDFIEER+N SLAELATRT DDP              KVC    P+D     D              +    +P  +P P + P  +  S     W +D+  +D       NS       F +E+G                            EEVCLFPSVW EWTR                 T+ R+H +VR S GR  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPRTCFLRG         G   +  +  T   D        R +A +A       +  PT +    VAS   G                                     + G +                   V GDG+VDAADGGDTGV PM+ GDDSDGFGD+G               XXXXXXXXXXXXXXX                                                         G T  +  G G I  +A        S   G+ + +D                      GE+  +W                    H  GV  ++   R       A HTTTLSQIVPYISGGD TM+DGMLLDVDGG E A AT DKID  S L L +L+AIK KTERVRQLSLEIF KASVQDLLP
Sbjct:  106 VLYMDADGGGGGHGGTRAILALSEGFGIDLAMGRAANVLPEYVDEATMKCAAIHQDGHWTLVALGGKDDDEATQVGSESDVLDFIEERINMSLAELATRTGDDPTXXXXXXXXXXXNVKVCSSK-PYDYDYDSDTNVVF---------TNSTTEPHSLPWPRTWPDPTHGSTRGCTWAEDDLLEDIVERPRDNSVYGRFGVFADEDGDXXXXXXXXXXXXXXXXXXXXEVRTRGPEEVCLFPSVWSEWTR-----------------TQPRKHSRVRRSSGRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPRTCFLRGVHTQNRTDRGENDQDPDACTSILDAPVHAKDLRAQARKANLVKVRGSQGPTKRKAAGVASD--GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVAGVKHXXXXXXXXXXXXXXXXXCVTGDGEVDAADGGDTGVDPMKVGDDSDGFGDSGX--------------XXXXXXXXXXXXXXXAKVAKQGRKQKAAGQKRVTGPKLARWLTEPVLPCLDKFIRTNRKLAKQRGKDHEGSAGHTPGKPAGVGYITDLAGPLSLLSKSKEGGFRVFKDTFFPRANINLLSLSEDDVKNLRGEEKNRWSKTKRLRAHYDLDYVFDPVGHRCGVGADKGSTRRREDPEGATHTTTLSQIVPYISGGDKTMSDGMLLDVDGGIEGAVATVDKIDSKSKLSLVNLQAIKTKTERVRQLSLEIFAKASVQDLLP 826          
BLAST of mRNA_Ecto-sp13_S_contig8642.20084.1 vs. uniprot
Match: D7G3R9_ECTSI (Helicase_C_4 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3R9_ECTSI)

HSP 1 Score: 269 bits (688), Expect = 1.240e-75
Identity = 204/356 (57.30%), Postives = 226/356 (63.48%), Query Frame = 1
Query:    1 VMYMDADGGGEGHGGTRAILALSEGFGIDLAMGRAANVLPEYVDGATMKCAAIHKDGHWILVALD-GKDDDEAT-KVGSESDVLDFIEERVNSSLAELA-TRTDDDPASTVDGTKVCEGHFPHDIGVGIDXXXXXXXXXXXXXSSRGD-VKPDPIPQPSGPT--------------------------SSRTSWASHPWEDDEHWDDYQNYLDHNSFFIEEEGEEVCLFPSVWREWTRGPEXXXXXXXXXXXXXRTRSRQHGKVRGSRGRRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPRTCFLRGGAYPEQDEQLTGDGTEQETGQRPEATRAPASPAFPP 978
            + YMD DGGG GHGG RA+LAL E FG DLAMG   + L EYV+G+T KC  +H  GHW LV L+ G +DDEAT KVGS SDVLDFIEERV+SSLAELA TRT DD  +T DG K      P+DI VG +             +S    V   PIP+    T                           SR SWASHPW+DDEHWDDYQ YL HNSFF EE+ EEVC   ++WREWTRGP XXXXXXXXXXXXXR   RQHG+VRGS GRR            XXXXXXXXXXXXXXXX           RRPRTCFLRGGA PEQDEQ+TG+ TEQETGQRPEAT  P+S A PP
Sbjct:  490 IDYMDHDGGGGGHGGMRAMLALCEAFGFDLAMGPEMSGLVEYVEGSTEKCMELHCKGHWNLVVLNYGNEDDEATTKVGSASDVLDFIEERVDSSLAELAATRTGDDATTTRDGAK------PNDIDVGSESVFSDSTTAPPSPASPPALVTHAPIPEHIIATWSDADXXXXXXXXXXXXXXXXXPSHIFSRASWASHPWDDDEHWDDYQKYLGHNSFFAEED-EEVCFRETLWREWTRGPXXXXXXXXXXXXXXRMHPRQHGRVRGSGGRRKRTRKNKKHRFPXXXXXXXXXXXXXXXXLARRARVGGRHRRPRTCFLRGGARPEQDEQVTGEVTEQETGQRPEATVVPSSLAGPP 838          
BLAST of mRNA_Ecto-sp13_S_contig8642.20084.1 vs. uniprot
Match: D7FZA9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZA9_ECTSI)

HSP 1 Score: 222 bits (566), Expect = 2.740e-60
Identity = 140/243 (57.61%), Postives = 164/243 (67.49%), Query Frame = 1
Query:    1 VMYMDADGGGEGHGGTRAILALSEGFGIDLAMGRAANVLPEYVDGATMKCAAIHKD-GHWILVALDGKDDDEATKVGSESDVLDFIEERVNSSLAELATRTD-DDPASTVDGTKVCEGHFPHDIGVGIDXXXXXXXXXXXXXSS-RGDVKPDPIPQPSGPTSSRTSWASHPWEDDEHWDDYQNYLDHNSFFIEEEGEEVCLFPSVWREWTRGPEXXXXXXXXXXXXXRTRSRQHGKVRGSRGR 720
            ++YMD DGGG GHGG  AI AL+EGFGIDL MGR  +V   +++GAT + A    D GHW L       + +  +VGSESDV+D++EER+N SLAELA   D DDP ST D     +   P +I +G D             SS RGDV PD IP+PS PTSSR SWASHPW+DDE+W D Q YLDHNSFF EE    VCLFPSVW EWTRGPEXXXXXXXXXXXXX T+ R+  +VRGS GR
Sbjct:    1 MLYMDPDGGGGGHGGMEAIRALAEGFGIDLPMGREVDVDTAFIEGATKRMALHDPDAGHWSLRVFMTNKEQDGVRVGSESDVVDYVEERINLSLAELAINHDGDDPTSTGDDVTTGDDVKPPNIDIGCDTEFSDSTTAPPSLSSSRGDVTPDLIPEPSSPTSSRASWASHPWDDDEYWGDDQIYLDHNSFFAEE----VCLFPSVWGEWTRGPEXXXXXXXXXXXXXXTQPRKRCRVRGSGGR 239          
BLAST of mRNA_Ecto-sp13_S_contig8642.20084.1 vs. uniprot
Match: D7FZ65_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZ65_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 4.420e-29
Identity = 171/532 (32.14%), Postives = 205/532 (38.53%), Query Frame = 1
Query:  244 LDFIEERVNSSLAELATRTDDDPASTVDGTKVCEGHFPHDIGVGIDXXXXXXXXXXXXXSSRGDVKPDPIPQPSGPTSSRTSWASHPWEDDEHWDDYQNYLDHNSFFIEEEGEEVCLFPSVWREWTRGPEXXXXXXXXXXXXXRTRSRQHGKVRGSRGRRTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRRPRTCFLRGGAYPEQDEQLTGDGTEQ------------ETGQRPEATRAPASPAFPPTGKAQPFVASSLVGGRTTKTLMAVQAYWMHLSMSDAIEPKPARPTSLRSTDLRGPRGAHARPPASRVAGDGDVDAADGGDTGVAPMEEGDDSDGFGDAGAGVGGDSWRDSDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKLGRTKVRLEGGTIQKVASFRSGWYILEDGEKIRQWELLSTRHGKGVTLEQDVARYIRQLAAVHTTTLSQIVPYISGGDTTMTDGMLLDVD 1803
            +DFIE  +NS+L + A  T  D  +T D  K      P  + VG D                     D    P  PTSS+ SWASHPW+DDEHWDDYQ YLDHN  F+EEEGEEV LFPSVW  WTR                 T  R +GK R S GRRT                XXXXXXXXXXXXXX        RR  T F  GG  PE D Q TG+  EQ            ETG  P  + A A PA P            + GGRT +   A +            E +PA  TS     LR     H  P          V+       G+A M              G+  D   D+                                                                           L  TKV + GG    V SF +G Y LEDG +I QWELL TR G GVTL+ +  R++R L A +T  +++ VP+   G   M+ GML +VD
Sbjct:    1 MDFIEGCINSALEKSAATTGADATTTEDDVKK-----PPGVDVGSDTKFF-----------------DSTTAPPSPTSSQASWASHPWDDDEHWDDYQKYLDHNCVFVEEEGEEVYLFPSVWSVWTR-----------------THPRWYGKARRSGGRRTTTRPNKKRRVPRRVRDXXXXXXXXXXXXXXSARVGGRRRRSPTSFRGGGDAPEGD-QGTGEEAEQGPVQVEEQETGEETGDDPMVSGAQAEPAPP------------ITGGRTKRLRRAAR---------HGDELRPAAHTST----LR-----HLHPEMEAGCTVYGVETV----PGLAKML------------TGLTEDPNNDN----------------------------------LLVEDGVYCRRDKLDELESAFSAAYMFNPSHIGVSLNPLDPLNETKVEI-GGRELVVKSFNTGKYTLEDGTEIGQWELLETRCGGGVTLDDECRRFVRFLVATYTAMMARGVPFERDGGN-MSGGMLWNVD 410          
BLAST of mRNA_Ecto-sp13_S_contig8642.20084.1 vs. uniprot
Match: D7FUC5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC5_ECTSI)

HSP 1 Score: 108 bits (269), Expect = 1.780e-24
Identity = 62/142 (43.66%), Postives = 71/142 (50.00%), Query Frame = 1
Query:  190 LDGKDDDEATKVGSESDVLDFIEERVNSSLAELATRTDDDPASTVDGTKVCEGHFPHDIGVGIDXXXXXXXXXXXXXSSRGDVKPDPIPQPSGPTSSRTSWASHPWEDDEHWDDYQNYLDHNSFFIEEEGEEVCLFPSVWRE 615
            +  K+DD A +VGSESDV+DF+E R+  SLAELAT T DDP                                                        + SWASHPW+DDEHWDDY+ YLDHNSFF EEE EEVC FPSVW E
Sbjct:    1 MTNKEDDGAHRVGSESDVVDFVEARIKLSLAELATGTGDDPMXXXXXXXXXXXX------------------------------------------GKASWASHPWDDDEHWDDYKKYLDHNSFFTEEEREEVCPFPSVWSE 100          
BLAST of mRNA_Ecto-sp13_S_contig8642.20084.1 vs. uniprot
Match: UPI0000161E59 (hypothetical protein n=1 Tax=Ectocarpus siliculosus virus 1 TaxID=37665 RepID=UPI0000161E59)

HSP 1 Score: 107 bits (268), Expect = 1.090e-21
Identity = 67/144 (46.53%), Postives = 89/144 (61.81%), Query Frame = 1
Query: 1531 KLGRTKVRLEGGTIQKVASFRSGWYILEDGE-KIRQWELLSTRHGKGVTLEQDVARYIRQLAAVHTTTLSQIVPYISGGDTTMTDGMLLDVDGGTERAAATGDKIDHVSNLPLDDLEAIKNKTERVRQLSLEIFTKASVQDLLP 1959
            ++GRT V   G  +Q V +F  G Y L D + K+ QW++L  RHG+GVTLEQD+ RYI QL   +    S  VP I   D  + DGM+LDV GG   A  + D ID +S L  ++L  IK  T+RVR  +LEIFT +SV+D+LP
Sbjct:  201 EVGRTTVTW-GNKVQTVEAFDYGIYTLGDKKSKLTQWDVLENRHGRGVTLEQDLRRYIGQLVLTYVVMQSTGVPEIEN-DGNVHDGMMLDVYGGLANAEKSLDGIDSLSQLGREELLRIKTDTDRVRDFALEIFTGSSVRDILP 342          
BLAST of mRNA_Ecto-sp13_S_contig8642.20084.1 vs. uniprot
Match: A0A6H5L073_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L073_9PHAE)

HSP 1 Score: 107 bits (267), Expect = 3.280e-20
Identity = 66/144 (45.83%), Postives = 88/144 (61.11%), Query Frame = 1
Query: 1531 KLGRTKVRLEGGTIQKVASFRSGWYILEDGE-KIRQWELLSTRHGKGVTLEQDVARYIRQLAAVHTTTLSQIVPYISGGDTTMTDGMLLDVDGGTERAAATGDKIDHVSNLPLDDLEAIKNKTERVRQLSLEIFTKASVQDLLP 1959
            ++G+T V  +G  +QKV +F  G+Y L D E K+ QW++L  R G GVTLEQD+ RYI QL   +    S  VP I   D  + DGM+LDVDG   RA    D ID  S L  + L  IK  T++VR  +L+IFT +SV+D+LP
Sbjct:  751 EVGKTTVMWKG-KVQKVEAFDYGFYTLGDKEFKLTQWDVLENRRGSGVTLEQDLRRYIGQLVLTYVVMQSTGVPEIEN-DGNVHDGMMLDVDGALTRAEKNLDGIDRHSQLGKEKLLEIKKNTDKVRDFALKIFTSSSVRDILP 892          
BLAST of mRNA_Ecto-sp13_S_contig8642.20084.1 vs. uniprot
Match: A0A6H5L6S7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6S7_9PHAE)

HSP 1 Score: 85.1 bits (209), Expect = 2.150e-13
Identity = 55/143 (38.46%), Postives = 83/143 (58.04%), Query Frame = 1
Query: 1534 LGRTKVRLEGGTIQKVASFRSGWYILEDGEKIRQWELLSTRHGKGVTLEQDVARYIRQLAAVHTTTLSQIVPYISGGDTTMTDGMLLDVDGGTERAAATGDKIDHVSN-LPLDDLEAIKNKTERVRQLSLEIFTKASVQDLLP 1959
            +G T+V+++G  I  V SF  G Y L   + I QWELL  R G+G TL+ ++ R+I Q A  +   +++ VPY        T+GML ++    ERA A  D ID  SN + L++L +++   E++R LSLEIFT   + + LP
Sbjct:  235 VGSTRVKIDG-RIFVVESFDHGKYNLAGHKPITQWELLQNRRGEGATLDDELRRFIIQQADDYVVMMARAVPYFHNCGIA-TEGMLWNIKEAVERARAHPDNIDVESNKMTLEELASLQEGHEKMRSLSLEIFTTLPLSETLP 375          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8642.20084.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5L612_9PHAE1.030e-7641.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G3R9_ECTSI1.240e-7557.30Helicase_C_4 domain-containing protein n=1 Tax=Ect... [more]
D7FZA9_ECTSI2.740e-6057.61Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FZ65_ECTSI4.420e-2932.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7FUC5_ECTSI1.780e-2443.66Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
UPI0000161E591.090e-2146.53hypothetical protein n=1 Tax=Ectocarpus siliculosu... [more]
A0A6H5L073_9PHAE3.280e-2045.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6S7_9PHAE2.150e-1338.46Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8642contigEcto-sp13_S_contig8642:754..3833 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score276.2
Seed ortholog evalue4e-71
Seed eggNOG ortholog2880.D7G3R9
Model size1959
Hectar predicted targeting categoryother localisation
Exons7
EggNOG free text desc.cellular response to interleukin-11
EggNOG OGsKOG1513@1,KOG1513@2759
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-03_000760.1
Cds size1956
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8642.20084.1prot_Ecto-sp13_S_contig8642.20084.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8642 757..3833 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464136.8370564-UTR-Ecto-sp13_S_contig8642:753..7561681464136.8370564-UTR-Ecto-sp13_S_contig8642:753..756Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8642 754..756 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464136.8502238-CDS-Ecto-sp13_S_contig8642:756..9481681464136.8502238-CDS-Ecto-sp13_S_contig8642:756..948Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8642 757..948 +
1681464136.8594608-CDS-Ecto-sp13_S_contig8642:1072..12311681464136.8594608-CDS-Ecto-sp13_S_contig8642:1072..1231Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8642 1073..1231 +
1681464136.868145-CDS-Ecto-sp13_S_contig8642:1345..18881681464136.868145-CDS-Ecto-sp13_S_contig8642:1345..1888Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8642 1346..1888 +
1681464136.8766909-CDS-Ecto-sp13_S_contig8642:2003..21151681464136.8766909-CDS-Ecto-sp13_S_contig8642:2003..2115Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8642 2004..2115 +
1681464136.8849688-CDS-Ecto-sp13_S_contig8642:2248..24061681464136.8849688-CDS-Ecto-sp13_S_contig8642:2248..2406Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8642 2249..2406 +
1681464136.8931308-CDS-Ecto-sp13_S_contig8642:2609..29751681464136.8931308-CDS-Ecto-sp13_S_contig8642:2609..2975Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8642 2610..2975 +
1681464136.901395-CDS-Ecto-sp13_S_contig8642:3407..38331681464136.901395-CDS-Ecto-sp13_S_contig8642:3407..3833Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8642 3408..3833 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8642.20084.1

>prot_Ecto-sp13_S_contig8642.20084.1 ID=prot_Ecto-sp13_S_contig8642.20084.1|Name=mRNA_Ecto-sp13_S_contig8642.20084.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=652bp
MYMDADGGGEGHGGTRAILALSEGFGIDLAMGRAANVLPEYVDGATMKCA
AIHKDGHWILVALDGKDDDEATKVGSESDVLDFIEERVNSSLAELATRTD
DDPASTVDGTKVCEGHFPHDIGVGIDTDSGSSTAPPSPSSSRGDVKPDPI
PQPSGPTSSRTSWASHPWEDDEHWDDYQNYLDHNSFFIEEEGEEVCLFPS
VWREWTRGPEEVCLCPSVWSEWSRTRSRQHGKVRGSRGRRTTTRKNKKRR
VPRRRQDRRRRAALRRKRLARRARVGGRRRRPRTCFLRGGAYPEQDEQLT
GDGTEQETGQRPEATRAPASPAFPPTGKAQPFVASSLVGGRTTKTLMAVQ
AYWMHLSMSDAIEPKPARPTSLRSTDLRGPRGAHARPPASRVAGDGDVDA
ADGGDTGVAPMEEGDDSDGFGDAGAGVGGDSWRDSDGDNDSEGGGAGGGS
GSGSNDSDSGSDSGSDSGSGSGSGSDSGSDSYSDSGSGSDSGSDSGSDSG
GGGGGGGGAKLGRTKVRLEGGTIQKVASFRSGWYILEDGEKIRQWELLST
RHGKGVTLEQDVARYIRQLAAVHTTTLSQIVPYISGGDTTMTDGMLLDVD
GGTERAAATGDKIDHVSNLPLDDLEAIKNKTERVRQLSLEIFTKASVQDL
LP
back to top

mRNA from alignment at Ecto-sp13_S_contig8642:754..3833+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8642.20084.1 ID=mRNA_Ecto-sp13_S_contig8642.20084.1|Name=mRNA_Ecto-sp13_S_contig8642.20084.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3080bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8642:754..3833+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTAATGTACATGGACGCTGACGGCGGTGGCGAGGGACACGGTGGCACGAG GGCTATCCTTGCGCTTTCTGAGGGTTTCGGCATCGACTTGGCCATGGGGC GGGCGGCTAACGTGTTGCCAGAGTACGTCGATGGGGCCACCATGAAGTGC GCGGCGATCCACAAAGACGGACACTGGATTCTGGTCGCACTCGACGTGAG TTTTGCATGTGTTTTTTTATGTACATCGTTGAGTTCGGATGTGCTAAGGT GACCTCGCCGAATACATATGTAGTGCATCACGTTTGTTTACGTTTCCCTT CTTCTTTCCAACGTTTTAGGGCAAGGATGATGACGAAGCCACCAAAGTGG GGAGTGAGAGCGATGTGCTGGACTTTATCGAGGAGCGCGTCAACAGCTCC CTGGCGGAACTTGCCACCCGCACGGACGACGACCCCGCTAGTACGGTGGA TGGCACGAAGGTGTGTGAAGGACATTTTGTTTTGCTTTGTTTGTTGAGAA ACTAGACAAGACAACGCAGAAATACTCAGTTGCTGCAATATACTCATTTC TCCCCCTTATTTCTCTTCTCGCGTGTATTTTGTCTCGTGAAGCCCCATGA CATCGGCGTCGGCATCGACACCGACTCCGGCTCGTCCACCGCGCCCCCCA GCCCCAGTTCGTCGCGGGGTGACGTGAAGCCCGACCCCATCCCGCAGCCC TCGGGCCCCACCTCATCACGGACCTCCTGGGCGTCTCACCCATGGGAGGA TGACGAGCACTGGGACGACTACCAGAATTACCTCGACCACAACAGCTTCT TCATCGAGGAGGAGGGGGAGGAGGTCTGCCTGTTCCCGTCCGTGTGGCGC GAGTGGACGCGGGGCCCGGAGGAGGTTTGCCTCTGCCCGTCGGTGTGGTC CGAGTGGTCCCGGACTCGTTCCCGCCAGCACGGGAAAGTGCGCGGCAGCC GTGGGCGGAGGACGACGACGAGGAAGAACAAGAAACGCCGGGTCCCGCGT CGCCGCCAGGACAGACGCCGCCGCGCGGCCTTGCGGCGCAAACGATTGGC CAGGCGTGCACGCGTGGGTGGACGTCGACGCCGGCCGCGCACCTGCTTTC TCCGAGGGGGTGCATACCCGGAACAGGACGAACAGGTGTGTTTCAGTTGT GTGCAAACAGTAAATAACAAGGTTTGTTCTGGTTTTGATGAGATCACATG AGCCGCGTTTGTCACCCTAACCAGCTTCGCAAAATCTCTCGTCTCGCCAG CTGACGGGGGACGGCACGGAGCAAGAGACGGGGCAGCGTCCAGAGGCCAC CAGAGCGCCGGCCAGTCCCGCTTTTCCGCCCACCGGTAAGGCTCAACCGT TTGTCGCCTCGAGTCGGATTTCGTAGATCGATTTACGAGTGGTGTGGTCT TCGTCATTTTTTCATAAATGATTGACATCGACACAAATTTAATTACCCAA CCTTTTTTCCATTATTTGCGTCGTACCAGTTCGGCGCTCCGGCAGGCCTG GTAGGGGGGAGAACAACCAAGACCCTGATGGCAGTACAAGCATATTGGAT GCACCTCAGCATGTCAGATGCCATAGAGCCCAAGCCCGCAAGGCCAACCT CGTTAAGGTCAACGGATCTCAGGGGCCCGCGTGGTGCCCACGCTCGGCCG CCGGTGTCGCTGTTGGCGGCGGTGGCGGTAAACCCACGGCCGCCGGTGCC CCTGGGGGTGGCGGTGGTGGTAAACGCAAGGCCGCCGGTGTCGCTGGCGG TGGCACCAAGCACAAGGCTACCCGTGTCGCTGGCGATAGCAGCAAACGCA CGGCCGTCATTGTCGCTGGCGGTGGCACCAACCAAGCACAGGCTACCAAG CACAAGGCCTCCCGTGTCGCTGGCGATGGCGATGTGGACGCTGCCGACGG GGGTGACACAGGGGTCGCTCCCATGGAAGAGGGCGACGATAGCGATGGAT TCGGAGACGCCGGTGCCGGTGTCGGGGGTGACAGCTGGAGAGACAGCGAC GGCGATAACGACAGCGAGGGGGGCGGTGCCGGGGGTGGCAGCGGCAGCGG AAGCAACGACAGCGACAGCGGCAGCGACAGCGGCAGCGACAGCGGCAGCG GCAGCGGCAGCGGCAGCGACAGCGGCAGCGACAGCTACAGCGACAGCGGC AGCGGCAGCGACAGCGGCAGCGACAGCGGCAGCGACAGTGGTGGCGGTGG CGGTGGCGGTGGCGGTGCGAAAGTTGCCAAGCAAGCACGAAAGCATAAGG CAGCTGGGCCAAAGAGAGTAACGAGCACGCAACTTAGTCAATGGCTGACG GAACCGGTCCTGCCCTGCTTGGACAAATTCATCAAAAACAATCGCAAGCT CGCCGCTGATCGAGCAAAAACCCACAAGGGTTCGGCACGTCGGACACCGG GGAAGCCTGCCGGAGTGGGGTCGGTCGCGGATCTTGCCGGTCCCCTTTCT CTCCTGTCGAAGAGCAAGGAAGGTGGATTCCGAGTATTCAAGGACATTTT CTTCCCGCGATCCAATATAGACCTGCTCTCGCTGAGTGACAACGATGGCA AAAACCTGTGGGGGGAGAAGAAAAACCGTTGGAACAAGATGAAGCGACTC CGGACACACTACGACTTGGACCACGTCTTTGATCCTTTGGACATCGATGT GAAGTTGGGGAGGACAAAGGTTCGGCTCGAAGGCGGAACCATCCAGAAGG TGGCTTCATTCAGGAGCGGTTGGTACATTCTGGAAGACGGAGAGAAGATC CGTCAATGGGAGCTTTTGTCCACGCGACACGGGAAAGGCGTGACGCTAGA GCAGGACGTCGCGCGGTACATTCGACAACTGGCCGCCGTGCACACCACCA CCCTGAGTCAAATCGTGCCGTACATCTCGGGGGGTGACACGACAATGACT GATGGGATGCTGCTGGACGTCGACGGTGGTACGGAACGTGCGGCAGCCAC CGGTGACAAGATAGACCACGTGAGCAACCTACCACTGGATGATCTCGAGG CAATAAAGAACAAGACGGAAAGGGTCAGGCAGCTTTCTCTTGAAATCTTT ACCAAGGCCAGTGTACAAGACCTCCTGCCC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8642:754..3833+

>mRNA_Ecto-sp13_S_contig8642.20084.1 ID=mRNA_Ecto-sp13_S_contig8642.20084.1|Name=mRNA_Ecto-sp13_S_contig8642.20084.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1956bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8642:754..3833+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTACATGGACGCTGACGGCGGTGGCGAGGGACACGGTGGCACGAGGGC
TATCCTTGCGCTTTCTGAGGGTTTCGGCATCGACTTGGCCATGGGGCGGG
CGGCTAACGTGTTGCCAGAGTACGTCGATGGGGCCACCATGAAGTGCGCG
GCGATCCACAAAGACGGACACTGGATTCTGGTCGCACTCGACGGCAAGGA
TGATGACGAAGCCACCAAAGTGGGGAGTGAGAGCGATGTGCTGGACTTTA
TCGAGGAGCGCGTCAACAGCTCCCTGGCGGAACTTGCCACCCGCACGGAC
GACGACCCCGCTAGTACGGTGGATGGCACGAAGGTGTGTGAAGGACATTT
TCCCCATGACATCGGCGTCGGCATCGACACCGACTCCGGCTCGTCCACCG
CGCCCCCCAGCCCCAGTTCGTCGCGGGGTGACGTGAAGCCCGACCCCATC
CCGCAGCCCTCGGGCCCCACCTCATCACGGACCTCCTGGGCGTCTCACCC
ATGGGAGGATGACGAGCACTGGGACGACTACCAGAATTACCTCGACCACA
ACAGCTTCTTCATCGAGGAGGAGGGGGAGGAGGTCTGCCTGTTCCCGTCC
GTGTGGCGCGAGTGGACGCGGGGCCCGGAGGAGGTTTGCCTCTGCCCGTC
GGTGTGGTCCGAGTGGTCCCGGACTCGTTCCCGCCAGCACGGGAAAGTGC
GCGGCAGCCGTGGGCGGAGGACGACGACGAGGAAGAACAAGAAACGCCGG
GTCCCGCGTCGCCGCCAGGACAGACGCCGCCGCGCGGCCTTGCGGCGCAA
ACGATTGGCCAGGCGTGCACGCGTGGGTGGACGTCGACGCCGGCCGCGCA
CCTGCTTTCTCCGAGGGGGTGCATACCCGGAACAGGACGAACAGCTGACG
GGGGACGGCACGGAGCAAGAGACGGGGCAGCGTCCAGAGGCCACCAGAGC
GCCGGCCAGTCCCGCTTTTCCGCCCACCGGTAAGGCTCAACCGTTTGTCG
CCTCGAGCCTGGTAGGGGGGAGAACAACCAAGACCCTGATGGCAGTACAA
GCATATTGGATGCACCTCAGCATGTCAGATGCCATAGAGCCCAAGCCCGC
AAGGCCAACCTCGTTAAGGTCAACGGATCTCAGGGGCCCGCGTGGTGCCC
ACGCTCGGCCGCCGGCCTCCCGTGTCGCTGGCGATGGCGATGTGGACGCT
GCCGACGGGGGTGACACAGGGGTCGCTCCCATGGAAGAGGGCGACGATAG
CGATGGATTCGGAGACGCCGGTGCCGGTGTCGGGGGTGACAGCTGGAGAG
ACAGCGACGGCGATAACGACAGCGAGGGGGGCGGTGCCGGGGGTGGCAGC
GGCAGCGGAAGCAACGACAGCGACAGCGGCAGCGACAGCGGCAGCGACAG
CGGCAGCGGCAGCGGCAGCGGCAGCGACAGCGGCAGCGACAGCTACAGCG
ACAGCGGCAGCGGCAGCGACAGCGGCAGCGACAGCGGCAGCGACAGTGGT
GGCGGTGGCGGTGGCGGTGGCGGTGCGAAATTGGGGAGGACAAAGGTTCG
GCTCGAAGGCGGAACCATCCAGAAGGTGGCTTCATTCAGGAGCGGTTGGT
ACATTCTGGAAGACGGAGAGAAGATCCGTCAATGGGAGCTTTTGTCCACG
CGACACGGGAAAGGCGTGACGCTAGAGCAGGACGTCGCGCGGTACATTCG
ACAACTGGCCGCCGTGCACACCACCACCCTGAGTCAAATCGTGCCGTACA
TCTCGGGGGGTGACACGACAATGACTGATGGGATGCTGCTGGACGTCGAC
GGTGGTACGGAACGTGCGGCAGCCACCGGTGACAAGATAGACCACGTGAG
CAACCTACCACTGGATGATCTCGAGGCAATAAAGAACAAGACGGAAAGGG
TCAGGCAGCTTTCTCTTGAAATCTTTACCAAGGCCAGTGTACAAGACCTC
CTGCCC
back to top