mRNA_Ecto-sp13_S_contig8633.20074.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8633.20074.1
Unique NamemRNA_Ecto-sp13_S_contig8633.20074.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8633.20074.1 vs. uniprot
Match: D8LSL9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LSL9_ECTSI)

HSP 1 Score: 179 bits (454), Expect = 2.290e-52
Identity = 95/103 (92.23%), Postives = 98/103 (95.15%), Query Frame = 1 
Query:    1 RLPALRAGGATAAPSWAALEAEARARPKTWSNPALVRRFEELAGFRLIGEDGRLTLGGFPGWTFDDVAAGAPGLQHSAMGGGRAVSRRAFRHAERLESEERKR 309
            RLPALRAGG  AAPSWAALEAEA ARP+TWSNPALVRRFEELAGFRL+GEDGRLTLGGFPGWTFDDVAAGAPGLQ SAMGGGRAVSRRAFRHAERLE+ ERKR
Sbjct:   23 RLPALRAGG-PAAPSWAALEAEACARPRTWSNPALVRRFEELAGFRLVGEDGRLTLGGFPGWTFDDVAAGAPGLQDSAMGGGRAVSRRAFRHAERLEALERKR 124
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BLAST of mRNA_Ecto-sp13_S_contig8633.20074.1 vs. uniprot
Match: A0A6H5KJQ6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJQ6_9PHAE)

HSP 1 Score: 183 bits (465), Expect = 1.170e-51
Identity = 97/103 (94.17%), Postives = 100/103 (97.09%), Query Frame = 1 
Query:    1 RLPALRAGGATAAPSWAALEAEARARPKTWSNPALVRRFEELAGFRLIGEDGRLTLGGFPGWTFDDVAAGAPGLQHSAMGGGRAVSRRAFRHAERLESEERKR 309
            RLPALRA GA AAPSWAALEAEA ARPKTWSNPALVRRFEELAGFRL+GEDGRLTLGGFPGWTFDDVAAGAPGLQ+SAMGGGRAVSRRAFRHAERLE+EERKR
Sbjct:  500 RLPALRAAGA-AAPSWAALEAEACARPKTWSNPALVRRFEELAGFRLVGEDGRLTLGGFPGWTFDDVAAGAPGLQNSAMGGGRAVSRRAFRHAERLEAEERKR 601
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8633.20074.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LSL9_ECTSI2.290e-5292.23Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJQ6_9PHAE1.170e-5194.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8633contigEcto-sp13_S_contig8633:6035..6595 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size312
Hectar predicted targeting categoryother localisation
Exons2
Cds size309
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464136.0860004-CDS-Ecto-sp13_S_contig8633:6034..61181681464136.0860004-CDS-Ecto-sp13_S_contig8633:6034..6118Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8633 6035..6118 +
1681464136.1033554-CDS-Ecto-sp13_S_contig8633:6368..65931681464136.1033554-CDS-Ecto-sp13_S_contig8633:6368..6593Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8633 6369..6593 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8633.20074.1prot_Ecto-sp13_S_contig8633.20074.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8633 6035..6593 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8633.20074.1

>prot_Ecto-sp13_S_contig8633.20074.1 ID=prot_Ecto-sp13_S_contig8633.20074.1|Name=mRNA_Ecto-sp13_S_contig8633.20074.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=103bp
RLPALRAGGATAAPSWAALEAEARARPKTWSNPALVRRFEELAGFRLIGE
DGRLTLGGFPGWTFDDVAAGAPGLQHSAMGGGRAVSRRAFRHAERLESEE
RKR
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mRNA from alignment at Ecto-sp13_S_contig8633:6035..6595+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8633.20074.1 ID=mRNA_Ecto-sp13_S_contig8633.20074.1|Name=mRNA_Ecto-sp13_S_contig8633.20074.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=561bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8633:6035..6595+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGGCTGCCGGCGCTCCGCGCGGGGGGGGCGACGGCGGCGCCGTCGTGGGC
GGCCCTGGAGGCCGAGGCTCGCGCCCGACCAAAGGTAGGTCGCGGACGGA
AGAACGCTGTTGTAGGCTGTTGCAGCGTTGGATGTGTGTGTGTGTGTGTG
TGTGTGTGTCTTTTATGGTAGCACCGACTGAAAGCACGGTTGTACACATG
TACCAGGCATGCTCTTACGTGCGGTCTCCCGTTCGCGTGCTCGACATTCC
CGCCCGTCGCTCGGACCCGTGCACGGACGCGCACCGTTTTTTTTTCGCTC
GTGCGCGCTTCGCTCTCGCGGGGCGGCACACTAGACGTGGAGCAACCCTG
CACTGGTCCGTCGGTTTGAGGAGCTCGCAGGCTTCCGCTTGATAGGGGAG
GACGGGCGGCTGACACTCGGCGGCTTCCCTGGCTGGACGTTCGACGACGT
CGCGGCGGGGGCCCCGGGGTTGCAGCATTCGGCCATGGGGGGGGGGCGCG
CCGTGTCGAGGCGCGCGTTCAGACACGCGGAGAGGCTTGAGTCGGAGGAG
AGAAAGAGGGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8633:6035..6595+

>mRNA_Ecto-sp13_S_contig8633.20074.1 ID=mRNA_Ecto-sp13_S_contig8633.20074.1|Name=mRNA_Ecto-sp13_S_contig8633.20074.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=309bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8633:6035..6595+ (Ectocarpus species13 EcNAP12_S_4_19m)
CGGCTGCCGGCGCTCCGCGCGGGGGGGGCGACGGCGGCGCCGTCGTGGGC
GGCCCTGGAGGCCGAGGCTCGCGCCCGACCAAAGACGTGGAGCAACCCTG
CACTGGTCCGTCGGTTTGAGGAGCTCGCAGGCTTCCGCTTGATAGGGGAG
GACGGGCGGCTGACACTCGGCGGCTTCCCTGGCTGGACGTTCGACGACGT
CGCGGCGGGGGCCCCGGGGTTGCAGCATTCGGCCATGGGGGGGGGGCGCG
CCGTGTCGAGGCGCGCGTTCAGACACGCGGAGAGGCTTGAGTCGGAGGAG
AGAAAGAGG
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