mRNA_Ecto-sp13_S_contig8628.20065.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8628.20065.1
Unique NamemRNA_Ecto-sp13_S_contig8628.20065.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8628.20065.1 vs. uniprot
Match: D8LDQ9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDQ9_ECTSI)

HSP 1 Score: 94.7 bits (234), Expect = 2.000e-24
Identity = 51/62 (82.26%), Postives = 51/62 (82.26%), Query Frame = 1 
Query:    1 MPVFFFLDPEMLDDPAMDSVNNVTLSYTFFQTAEEDAVLEEEKADEDE--DGRGGRLAVAAQ 180
            MPVFFFLDPEMLDDPAMDSVNNVTLSYTFFQTAEEDAV EE         DGRGGRLAV AQ
Sbjct:    1 MPVFFFLDPEMLDDPAMDSVNNVTLSYTFFQTAEEDAVPEEXXXXXXXXXDGRGGRLAVTAQ 62
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BLAST of mRNA_Ecto-sp13_S_contig8628.20065.1 vs. uniprot
Match: A0A835ZEK6_9STRA (Cytochrome c oxidase assembly protein CtaG/Cox11-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZEK6_9STRA)

HSP 1 Score: 73.9 bits (180), Expect = 2.690e-14
Identity = 39/66 (59.09%), Postives = 47/66 (71.21%), Query Frame = 1 
Query:    1 MPVFFFLDPEMLDDPAMDSVNNVTLSYTFFQTAEEDAVLEEEKADEDED-----------GRGGRL 165
            MPV FF+DPEMLDDPAMD+V+++TLSYTFF+T EEDAV E +  DE E+           GRG RL
Sbjct:  189 MPVLFFIDPEMLDDPAMDNVSDITLSYTFFKTGEEDAVEEPQVVDEVEEEDEEDVGVTAAGRGWRL 254
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BLAST of mRNA_Ecto-sp13_S_contig8628.20065.1 vs. uniprot
Match: A0A5D6YBM5_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6YBM5_9STRA)

HSP 1 Score: 63.2 bits (152), Expect = 1.710e-10
Identity = 29/56 (51.79%), Postives = 42/56 (75.00%), Query Frame = 1 
Query:    1 MPVFFFLDPEMLDDPAMDSVNNVTLSYTFFQTAEEDAVLEEEKADEDEDGRGGRLA 168
            MPVFFF+DPE+ DDP+M +V+N+TLSYTFF+T +    + EE  +E+E+G+    A
Sbjct:  178 MPVFFFIDPEICDDPSMSAVHNITLSYTFFKTDD----VNEEDVEEEEEGKASAEA 229
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BLAST of mRNA_Ecto-sp13_S_contig8628.20065.1 vs. uniprot
Match: A0A482RTI3_9ARCH (Cytochrome c oxidase assembly protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482RTI3_9ARCH)

HSP 1 Score: 63.2 bits (152), Expect = 1.830e-10
Identity = 26/37 (70.27%), Postives = 33/37 (89.19%), Query Frame = 1 
Query:    1 MPVFFFLDPEMLDDPAMDSVNNVTLSYTFFQTAEEDA 111
            MPVFFF+DP+  DDPAMD+VN++TLSYTFF+T +E A
Sbjct:  184 MPVFFFIDPQFADDPAMDTVNSITLSYTFFKTGDETA 220
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BLAST of mRNA_Ecto-sp13_S_contig8628.20065.1 vs. uniprot
Match: A0A485LJQ5_9STRA (Aste57867_22012 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LJQ5_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 3.080e-10
Identity = 26/36 (72.22%), Postives = 33/36 (91.67%), Query Frame = 1 
Query:    1 MPVFFFLDPEMLDDPAMDSVNNVTLSYTFFQTAEED 108
            MPVFFF+DPEM+DDP+M +V+N+TLSYTFFQT + D
Sbjct:  182 MPVFFFIDPEMVDDPSMHNVSNITLSYTFFQTNDVD 217
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BLAST of mRNA_Ecto-sp13_S_contig8628.20065.1 vs. uniprot
Match: A0A662WVH6_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662WVH6_9STRA)

HSP 1 Score: 59.7 bits (143), Expect = 3.140e-10
Identity = 28/47 (59.57%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:    1 MPVFFFLDPEMLDDPAMDSVNNVTLSYTFFQTAEEDAVLEEEKADED 141
            MPVFFF+DPE+ DDP+M+ V+N+TLSYTFF+T   D V E++  DE+
Sbjct:   49 MPVFFFIDPEICDDPSMNGVHNITLSYTFFKT---DDVNEDDVDDEE 92
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BLAST of mRNA_Ecto-sp13_S_contig8628.20065.1 vs. uniprot
Match: W7T859_9STRA (Cox11 cytochrome c oxidase assembly protein n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7T859_9STRA)

HSP 1 Score: 62.8 bits (151), Expect = 4.100e-10
Identity = 33/59 (55.93%), Postives = 44/59 (74.58%), Query Frame = 1 
Query:    1 MPVFFFLDPEMLDDPAMDSVNNVTLSYTFFQTAEE--DAVLEEEKADEDEDGRGGRLAV 171
            MPVFFF+DPEML+DP+MD+V+ +TLSYTFF+T EE  + V E  + + +  G GG  AV
Sbjct:  228 MPVFFFVDPEMLNDPSMDNVHEITLSYTFFKTDEENEEEVQEILRRNPNFPGSGGAHAV 286
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BLAST of mRNA_Ecto-sp13_S_contig8628.20065.1 vs. uniprot
Match: A0A4D9CVM6_9STRA (Uncharacterized protein n=1 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9CVM6_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 4.660e-10
Identity = 26/35 (74.29%), Postives = 33/35 (94.29%), Query Frame = 1 
Query:    1 MPVFFFLDPEMLDDPAMDSVNNVTLSYTFFQTAEE 105
            MPVFFF+DPEML+DP+MD+V+ +TLSYTFF+T EE
Sbjct:  160 MPVFFFVDPEMLNDPSMDNVHEITLSYTFFKTDEE 194
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BLAST of mRNA_Ecto-sp13_S_contig8628.20065.1 vs. uniprot
Match: A0A0W8D1I8_PHYNI (Cytochrome c oxidase assembly protein COX11 n=16 Tax=Phytophthora TaxID=4783 RepID=A0A0W8D1I8_PHYNI)

HSP 1 Score: 62.8 bits (151), Expect = 5.180e-10
Identity = 30/47 (63.83%), Postives = 38/47 (80.85%), Query Frame = 1 
Query:    1 MPVFFFLDPEMLDDPAMDSVNNVTLSYTFFQTAEEDAVLEEEKADED 141
            MPVFFF+DPE+ DDP+M+ V+N+TLSYTFF+T   D V E+E  DED
Sbjct:  349 MPVFFFIDPEICDDPSMNGVHNITLSYTFFKT---DDVSEDEVDDED 392
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BLAST of mRNA_Ecto-sp13_S_contig8628.20065.1 vs. uniprot
Match: M4QL95_JAKLI (Heme biosynthesis protein n=1 Tax=Jakoba libera TaxID=143017 RepID=M4QL95_JAKLI)

HSP 1 Score: 60.5 bits (145), Expect = 1.070e-9
Identity = 25/35 (71.43%), Postives = 31/35 (88.57%), Query Frame = 1 
Query:    1 MPVFFFLDPEMLDDPAMDSVNNVTLSYTFFQTAEE 105
            MPVFFFLDP++LDDP M  +++VTLSYTFFQ AE+
Sbjct:  155 MPVFFFLDPDLLDDPLMSDIDHVTLSYTFFQVAED 189
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8628.20065.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDQ9_ECTSI2.000e-2482.26Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835ZEK6_9STRA2.690e-1459.09Cytochrome c oxidase assembly protein CtaG/Cox11-d... [more]
A0A5D6YBM5_9STRA1.710e-1051.79Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
A0A482RTI3_9ARCH1.830e-1070.27Cytochrome c oxidase assembly protein n=1 Tax=arch... [more]
A0A485LJQ5_9STRA3.080e-1072.22Aste57867_22012 protein n=1 Tax=Aphanomyces stella... [more]
A0A662WVH6_9STRA3.140e-1059.57Uncharacterized protein (Fragment) n=2 Tax=Nothoph... [more]
W7T859_9STRA4.100e-1055.93Cox11 cytochrome c oxidase assembly protein n=1 Ta... [more]
A0A4D9CVM6_9STRA4.660e-1074.29Uncharacterized protein n=1 Tax=Nannochloropsis sa... [more]
A0A0W8D1I8_PHYNI5.180e-1063.83Cytochrome c oxidase assembly protein COX11 n=16 T... [more]
M4QL95_JAKLI1.070e-971.43Heme biosynthesis protein n=1 Tax=Jakoba libera Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8628contigEcto-sp13_S_contig8628:496..678 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score63.5
Seed ortholog evalue3.8e-08
Seed eggNOG ortholog42099.EPrPV00000018154
Preferred nameCOX11
Model size183
KEGG koko:K02258
KEGG TC3.D.4.8
KEGG Pathwayko00190,ko01100,ko04714,map00190,map01100,map04714
KEGG ModuleM00154
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003674,GO:0005488,GO:0005507,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0006091,GO:0007275,GO:0008150,GO:0008152,GO:0009060,GO:0009653,GO:0009791,GO:0009846,GO:0009856,GO:0009893,GO:0009987,GO:0010015,GO:0010101,GO:0010155,GO:0015980,GO:0016020,GO:0016021,GO:0016043,GO:0019222,GO:0022414,GO:0022607,GO:0022622,GO:0022898,GO:0031090,GO:0031224,GO:0031300,GO:0031301,GO:0031323,GO:0031325,GO:0031966,GO:0031967,GO:0031975,GO:0032409,GO:0032411,GO:0032412,GO:0032414,GO:0032501,GO:0032502,GO:0032592,GO:0032879,GO:0034762,GO:0034764,GO:0034765,GO:0034767,GO:0043085,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043269,GO:0043270,GO:0043467,GO:0043621,GO:0043933,GO:0044085,GO:0044093,GO:0044237,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044455,GO:0044464,GO:0044706,GO:0045333,GO:0046872,GO:0046914,GO:0048364,GO:0048518,GO:0048522,GO:0048528,GO:0048731,GO:0048856,GO:0050789,GO:0050790,GO:0050794,GO:0051049,GO:0051050,GO:0051341,GO:0051353,GO:0051704,GO:0055114,GO:0065003,GO:0065007,GO:0065009,GO:0071840,GO:0090696,GO:0090697,GO:0090698,GO:0098573,GO:0099402,GO:1904062,GO:1904064,GO:1904732,GO:1904734,GO:1904959,GO:1904960,GO:1905392
Exons1
EggNOG free text desc.Cytochrome c oxidase assembly protein COX11, mitochondrial. Source PGD
EggNOG OGs1MF80@121069,COG3175@1,KOG2540@2759
Ec32 ortholog descriptionCytochrome c oxidase assembly protein CtaG/Cox11
Ec32 orthologEc-19_001620.1
Cds size183
COG Functional cat.O
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03029
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464135.4519393-CDS-Ecto-sp13_S_contig8628:495..6781681464135.4519393-CDS-Ecto-sp13_S_contig8628:495..678Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8628 496..678 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8628.20065.1prot_Ecto-sp13_S_contig8628.20065.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8628 496..678 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8628.20065.1

>prot_Ecto-sp13_S_contig8628.20065.1 ID=prot_Ecto-sp13_S_contig8628.20065.1|Name=mRNA_Ecto-sp13_S_contig8628.20065.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=61bp
MPVFFFLDPEMLDDPAMDSVNNVTLSYTFFQTAEEDAVLEEEKADEDEDG
RGGRLAVAAQ*
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mRNA from alignment at Ecto-sp13_S_contig8628:496..678+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8628.20065.1 ID=mRNA_Ecto-sp13_S_contig8628.20065.1|Name=mRNA_Ecto-sp13_S_contig8628.20065.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=183bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8628:496..678+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCGTCTTCTTCTTCCTAGACCCCGAGATGCTCGACGACCCGGCCAT
GGACAGCGTCAACAACGTGACGCTGTCTTACACGTTCTTCCAGACCGCAG
AGGAGGACGCCGTGCTGGAGGAAGAAAAAGCAGATGAAGACGAGGATGGA
CGAGGGGGCAGATTGGCGGTGGCCGCACAATAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8628:496..678+

>mRNA_Ecto-sp13_S_contig8628.20065.1 ID=mRNA_Ecto-sp13_S_contig8628.20065.1|Name=mRNA_Ecto-sp13_S_contig8628.20065.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=183bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8628:496..678+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCCCGTCTTCTTCTTCCTAGACCCCGAGATGCTCGACGACCCGGCCAT
GGACAGCGTCAACAACGTGACGCTGTCTTACACGTTCTTCCAGACCGCAG
AGGAGGACGCCGTGCTGGAGGAAGAAAAAGCAGATGAAGACGAGGATGGA
CGAGGGGGCAGATTGGCGGTGGCCGCACAATAG
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