mRNA_Ecto-sp13_S_contig8627.20064.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8627.20064.1
Unique NamemRNA_Ecto-sp13_S_contig8627.20064.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8627.20064.1 vs. uniprot
Match: A0A6H5L040_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L040_9PHAE)

HSP 1 Score: 250 bits (638), Expect = 6.640e-77
Identity = 125/137 (91.24%), Postives = 129/137 (94.16%), Query Frame = 1 
Query:  199 AAGVLRYRMDGYRVASVTPLSDRHQILTEQSVETTEEGSLIVRFKRPLVETFFVGRDACAATAVAVGEEGTGGLAVAAAGATAEVCAGEAGGSSTEWLDPRERGVVLLWAYGTGAWPSYHDATGAFVLPRMTAVEVD 609
            AAGVLRYRMDGYR+ASVTPLSDRHQ+LTEQSVETTEEGSLIVRFKRPLVETF  GRDACAATA AVGEEGTGGL  A AGA AEVC+GEAGGSS EWLDPRERGVVLLWAYGTGAWPSYHDATGAFVLPR+TAVEVD
Sbjct:  244 AAGVLRYRMDGYRIASVTPLSDRHQVLTEQSVETTEEGSLIVRFKRPLVETFSAGRDACAATAAAVGEEGTGGLEAAVAGAVAEVCSGEAGGSSMEWLDPRERGVVLLWAYGTGAWPSYHDATGAFVLPRLTAVEVD 380
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8627.20064.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L040_9PHAE6.640e-7791.24Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8627contigEcto-sp13_S_contig8627:2303..3911 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1047
Hectar predicted targeting categorymitochondrion
Exons2
Ec32 ortholog descriptionHypothetical protein
Ec32 orthologEc-18_001490.1
Cds size612
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464135.400914-UTR-Ecto-sp13_S_contig8627:2302..27371681464135.400914-UTR-Ecto-sp13_S_contig8627:2302..2737Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8627 2303..2737 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464135.4108613-CDS-Ecto-sp13_S_contig8627:2737..31621681464135.4108613-CDS-Ecto-sp13_S_contig8627:2737..3162Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8627 2738..3162 -
1681464135.4197955-CDS-Ecto-sp13_S_contig8627:3724..39111681464135.4197955-CDS-Ecto-sp13_S_contig8627:3724..3911Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8627 3725..3911 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8627.20064.1prot_Ecto-sp13_S_contig8627.20064.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8627 2738..3911 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8627.20064.1

>prot_Ecto-sp13_S_contig8627.20064.1 ID=prot_Ecto-sp13_S_contig8627.20064.1|Name=mRNA_Ecto-sp13_S_contig8627.20064.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=204bp
MRRTAPRLRASGTAKTTTSSRSFSSGSGGLRAPRATTRPTRASCRARPGL
SRTRSWCTFPCRQPPAAAGVLRYRMDGYRVASVTPLSDRHQILTEQSVET
TEEGSLIVRFKRPLVETFFVGRDACAATAVAVGEEGTGGLAVAAAGATAE
VCAGEAGGSSTEWLDPRERGVVLLWAYGTGAWPSYHDATGAFVLPRMTAV
EVD*
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mRNA from alignment at Ecto-sp13_S_contig8627:2303..3911-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8627.20064.1 ID=mRNA_Ecto-sp13_S_contig8627.20064.1|Name=mRNA_Ecto-sp13_S_contig8627.20064.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1609bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8627:2303..3911- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGCCGGACGGCCCCTCGGCTCCGGGCGTCGGGCACAGCCAAGACCAC
CACGAGCAGCAGAAGTTTCAGCAGCGGGAGCGGCGGCCTCCGTGCGCCGA
GAGCGACGACCCGGCCTACGCGTGCCTCGTGCCGCGCCCGCCCGGGTCTT
TCGCGGACGAGATCATGGTGTACTTTTCCTTGTCGTCGTCGTCGGCGTCG
GCTGTGGGCGATGTAGCACATCAGCAGCAGCAGGAGCAGCAGGAACAGCA
GTGGCTTTCCGTCAAGGTCGTGGTTCCCGTGGCATCTCGGGGGGGTGGAA
GCGGGGGCGGGGGAGGAGCGAGATGGGCTTCGATAGGGTTCTCTCCGGAC
GGCAAGATGGCGGGTCCGAGCGAGGCCGTAGTCGGGTTCCTGGGGGCGGC
TGAGGCGGGCAGCAGCAGCAGCAGTAGCAGCCAAGGTAAGGGACGTTTTT
TTTATCTCGAGACAGGAACGCTGTTTTGGTTTTGGAAAATGTATGCATGC
AATCACTGAAAGACTTGCCCGGTTGAACTCAATCCCTCGATTATTTTGGA
AAATATTTATGCCTGCCTTCCACCCGATGTTGGTTTGGGCATAACTTTGT
TTTTGGCCGGCGAAATATGCGCGCGTTGGAAGGAAGTGCCTTCGTTGCCT
GCCGTTTGTTGACGCTGACTCTCATACATGTGTTTTGCCCACGGATCGTC
CAATTTGCCACTAAGTGTTCCATCCCGTCCGGGCATCTGGCTGCCGCAGA
ACCACCGGCGGCGGCGGGAGTCCTCCGCTACCGCATGGACGGTTACAGAG
TCGCCTCCGTGACACCCCTGTCGGATCGGCACCAAATTTTGACCGAACAG
AGCGTCGAGACCACCGAGGAAGGGTCCCTCATCGTACGTTTCAAGCGCCC
CCTGGTGGAAACATTTTTCGTGGGTCGGGACGCTTGCGCGGCAACGGCGG
TGGCCGTGGGGGAGGAAGGTACGGGGGGACTTGCAGTGGCTGCCGCAGGA
GCGACGGCTGAGGTCTGCGCGGGGGAAGCGGGCGGATCATCCACGGAGTG
GTTGGATCCCCGAGAGCGGGGCGTGGTGCTGCTTTGGGCCTACGGGACGG
GGGCCTGGCCGAGCTACCACGACGCCACGGGGGCGTTTGTTCTGCCGCGA
ATGACAGCAGTCGAGGTCGATTGACCCTCGCCCGGGCGGTTCCTTCTCTG
TAGAAGCGTCTTGACTGCGGTGTTGTTCGTGTTGGACCTGTTACAGTAGG
GTTGGTGGTTTTCCAACCCCCCATCTTGTGCCGTATTGTGCAGAACTTGT
GCAGAAAGGCTTTTCTTTTGTGGGAGGATCTTCGGTACTTGTTTTTTGTT
GTGTTTCTTGGTTCGCCGTCGATCAAAGACGGATGAAAAAGGAGCTTTTG
AAAGCACAATCAACGCTTGTCTCGGCTTTGTTGTTCGCAACCTTGGTGAT
TGGCATTTGAGTCATATCAATGTGAGCTGTAGCGAGGCAGCCCAGTACTA
CATGTCGTGAGGGCCAAGGGGGTACTTTGTTGATTTGCGTAGACCCCACG
ATCCCCTCCCCTCTTTGGAGGGCATTCATGACGAAGCTACTCTTGTTTCC
ACACTCCAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8627:2303..3911-

>mRNA_Ecto-sp13_S_contig8627.20064.1 ID=mRNA_Ecto-sp13_S_contig8627.20064.1|Name=mRNA_Ecto-sp13_S_contig8627.20064.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=612bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8627:2303..3911- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCGCCGGACGGCCCCTCGGCTCCGGGCGTCGGGCACAGCCAAGACCAC
CACGAGCAGCAGAAGTTTCAGCAGCGGGAGCGGCGGCCTCCGTGCGCCGA
GAGCGACGACCCGGCCTACGCGTGCCTCGTGCCGCGCCCGCCCGGGTCTT
TCGCGGACGAGATCATGGTGTACTTTTCCTTGTCGTCAACCACCGGCGGC
GGCGGGAGTCCTCCGCTACCGCATGGACGGTTACAGAGTCGCCTCCGTGA
CACCCCTGTCGGATCGGCACCAAATTTTGACCGAACAGAGCGTCGAGACC
ACCGAGGAAGGGTCCCTCATCGTACGTTTCAAGCGCCCCCTGGTGGAAAC
ATTTTTCGTGGGTCGGGACGCTTGCGCGGCAACGGCGGTGGCCGTGGGGG
AGGAAGGTACGGGGGGACTTGCAGTGGCTGCCGCAGGAGCGACGGCTGAG
GTCTGCGCGGGGGAAGCGGGCGGATCATCCACGGAGTGGTTGGATCCCCG
AGAGCGGGGCGTGGTGCTGCTTTGGGCCTACGGGACGGGGGCCTGGCCGA
GCTACCACGACGCCACGGGGGCGTTTGTTCTGCCGCGAATGACAGCAGTC
GAGGTCGATTGA
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