mRNA_Ecto-sp13_S_contig8625.20061.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8625.20061.1
Unique NamemRNA_Ecto-sp13_S_contig8625.20061.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8625.20061.1 vs. uniprot
Match: D7FMQ2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FMQ2_ECTSI)

HSP 1 Score: 73.6 bits (179), Expect = 1.770e-11
Identity = 39/50 (78.00%), Postives = 40/50 (80.00%), Query Frame = 3 
Query:  366 MDRFGGMTIGSNVAGSGDGGGADDLDMSSLRLAEGGTVGGSGFGLSAVAQ 515
            MDRFGGMT+GSNVAGSGDGGGADDLDMSSLRLAEGG         S VAQ
Sbjct:    1 MDRFGGMTLGSNVAGSGDGGGADDLDMSSLRLAEGGRXXXXXXXXSVVAQ 50
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8625.20061.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FMQ2_ECTSI1.770e-1178.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8625contigEcto-sp13_S_contig8625:1990..3228 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1018
Hectar predicted targeting categoryother localisation
Exons2
Cds size453
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464135.235816-UTR-Ecto-sp13_S_contig8625:1989..23871681464135.235816-UTR-Ecto-sp13_S_contig8625:1989..2387Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8625 1990..2387 -
1681464135.2690246-UTR-Ecto-sp13_S_contig8625:2840..29371681464135.2690246-UTR-Ecto-sp13_S_contig8625:2840..2937Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8625 2841..2937 -
1681464135.2806947-UTR-Ecto-sp13_S_contig8625:3158..32281681464135.2806947-UTR-Ecto-sp13_S_contig8625:3158..3228Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8625 3159..3228 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464135.2497835-CDS-Ecto-sp13_S_contig8625:2387..28401681464135.2497835-CDS-Ecto-sp13_S_contig8625:2387..2840Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8625 2388..2840 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8625.20061.1prot_Ecto-sp13_S_contig8625.20061.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8625 2388..2840 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8625.20061.1

>prot_Ecto-sp13_S_contig8625.20061.1 ID=prot_Ecto-sp13_S_contig8625.20061.1|Name=mRNA_Ecto-sp13_S_contig8625.20061.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=151bp
MNHQNSPWANDDGGFHRHHHQQAAGTHSKPTPREQQRQGWLVAEQPTSVG
GWGGSSGCGNQALDDAMDRFGGMTIGSNVAGSGDGGGADDLDMSSLRLAE
GGTVGGSGFGLSAVAQVRHKQKRGRKHVANQTSTPFPATLGDVAQITDDT
*
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mRNA from alignment at Ecto-sp13_S_contig8625:1990..3228-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8625.20061.1 ID=mRNA_Ecto-sp13_S_contig8625.20061.1|Name=mRNA_Ecto-sp13_S_contig8625.20061.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1239bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8625:1990..3228- (Ectocarpus species13 EcNAP12_S_4_19m)
CAAGTCTACCACGCACACTGCGAGCGTGAGCTACATCGCCGAGTACCCGG
AGCAGCGAGAGTTACACGAGGTATTGCAAAGGAGGAACGGCGAAAGAAAG
CCGGAGATTCGCCGTCGTGACTGCTGTTTACTGTTGGCACTCGACGTTTT
CAGCGGCTTGTTTTGAAAAATAAGGCGGCGCGTGCAGGGTCCGCTCTTCT
TCAACTTTCTCTCTCCCCTCCACAACACTCAGACGCGGCGTTACCGTTTA
CCCGCCCCCCCCCCCGCACGCGTACGTCGCCGTCCACATAGCTTCTTGTA
CAGAGACTGAACTTGCTTGCTGCAACTTGCACTTCTACCGAAAGGGCTGC
GTGCGCGTTCGGCACCAAAAACTCCGCGGCAAAGGAGAATGAATCATCAA
AACTCGCCCTGGGCAAACGATGATGGTGGTTTCCATCGCCATCATCATCA
GCAAGCAGCAGGAACGCACTCCAAACCAACTCCCCGAGAGCAGCAGCGTC
AAGGCTGGCTAGTGGCCGAGCAGCCTACTAGCGTAGGGGGTTGGGGCGGA
AGCAGCGGGTGCGGAAACCAAGCTTTAGATGACGCGATGGACCGTTTCGG
CGGGATGACTATAGGGTCCAACGTCGCCGGCAGTGGTGATGGCGGCGGGG
CGGATGACCTAGACATGAGTTCCCTGCGGCTGGCAGAGGGAGGAACAGTT
GGGGGGTCGGGCTTCGGTCTCTCTGCTGTTGCGCAGGTGAGACACAAACA
GAAAAGAGGCCGGAAACATGTTGCAAACCAAACATCAACCCCATTTCCAG
CAACGCTCGGAGATGTCGCGCAGATTACCGATGATACATAAGACTGCAAC
AACTTATCTCCATGCGTATCGGCATGTCGGAACCCCGAGTCTTGCTTTTT
TTGAAAATTTCTCGCTGAACTAAGAATAGCGCACACACATCGAAAGACTA
CCCGTGTTGGAGATTCTTATTCCCCGCTCAACTCATGATGCCTAACCCTC
TCAGTTCGGGAAGTTGTCGAGAAATAATCTGAACCTATAGTGGGAACAAG
CTCGATGACGTCACCTCGAAAAACACAAAGTCCCCGCTCACATTACACCT
CATGCAATCTGTGTACATAGCCTACGGCGTAATGTTGGTCATGTACATAC
TGTCGCTCCGTCGGTCCTTCCTTTGCAAGATGAAAGGATCATCAACATGG
GAGAGCCCGATGACTAGAAAGTGTGGTTGCCTTTTTTAC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8625:1990..3228-

>mRNA_Ecto-sp13_S_contig8625.20061.1 ID=mRNA_Ecto-sp13_S_contig8625.20061.1|Name=mRNA_Ecto-sp13_S_contig8625.20061.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=453bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8625:1990..3228- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAATCATCAAAACTCGCCCTGGGCAAACGATGATGGTGGTTTCCATCG
CCATCATCATCAGCAAGCAGCAGGAACGCACTCCAAACCAACTCCCCGAG
AGCAGCAGCGTCAAGGCTGGCTAGTGGCCGAGCAGCCTACTAGCGTAGGG
GGTTGGGGCGGAAGCAGCGGGTGCGGAAACCAAGCTTTAGATGACGCGAT
GGACCGTTTCGGCGGGATGACTATAGGGTCCAACGTCGCCGGCAGTGGTG
ATGGCGGCGGGGCGGATGACCTAGACATGAGTTCCCTGCGGCTGGCAGAG
GGAGGAACAGTTGGGGGGTCGGGCTTCGGTCTCTCTGCTGTTGCGCAGGT
GAGACACAAACAGAAAAGAGGCCGGAAACATGTTGCAAACCAAACATCAA
CCCCATTTCCAGCAACGCTCGGAGATGTCGCGCAGATTACCGATGATACA
TAA
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