mRNA_Ecto-sp13_S_contig86247.20060.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig86247.20060.1
Unique NamemRNA_Ecto-sp13_S_contig86247.20060.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig86247.20060.1 vs. uniprot
Match: D7G221_ECTSI (Similar to 1-Aminocyclopropane-1-Carboxylate Deaminase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G221_ECTSI)

HSP 1 Score: 98.2 bits (243), Expect = 2.670e-23
Identity = 47/49 (95.92%), Postives = 49/49 (100.00%), Query Frame = 1
Query:   10 QSNAMVAIAAVVASKPGSSFIYYTKPVPKWLRRNPVGNFARTIALGAEV 156
            +SNAMVAIAAVVASKPGSSFIYYTKPVPKWLRRNPVGNFARTIALGAE+
Sbjct:  237 ESNAMVAIAAVVASKPGSSFIYYTKPVPKWLRRNPVGNFARTIALGAEI 285          
BLAST of mRNA_Ecto-sp13_S_contig86247.20060.1 vs. uniprot
Match: A0A6H5KSQ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSQ9_9PHAE)

HSP 1 Score: 97.1 bits (240), Expect = 1.250e-22
Identity = 46/48 (95.83%), Postives = 48/48 (100.00%), Query Frame = 1
Query:   13 SNAMVAIAAVVASKPGSSFIYYTKPVPKWLRRNPVGNFARTIALGAEV 156
            SNAMVAIAAVVASKPGSSF+YYTKPVPKWLRRNPVGNFARTIALGAE+
Sbjct:  104 SNAMVAIAAVVASKPGSSFVYYTKPVPKWLRRNPVGNFARTIALGAEI 151          
BLAST of mRNA_Ecto-sp13_S_contig86247.20060.1 vs. uniprot
Match: A0A7S2DJY8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DJY8_9STRA)

HSP 1 Score: 74.7 bits (182), Expect = 2.020e-14
Identity = 35/51 (68.63%), Postives = 42/51 (82.35%), Query Frame = 1
Query:   10 QSNAMVAIAAVV-ASKPGSSFIYYTKPVPKWLRRNPVGNFARTIALGAEVR 159
            QSNAMVA+AAVV   +P S+F YYTKP+P+WLR NP GNFAR I+LG E+R
Sbjct:  113 QSNAMVALAAVVHRHQPSSTFTYYTKPIPRWLRNNPSGNFARAISLGTEIR 163          
BLAST of mRNA_Ecto-sp13_S_contig86247.20060.1 vs. uniprot
Match: K0TIX7_THAOC (Uncharacterized protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0TIX7_THAOC)

HSP 1 Score: 64.3 bits (155), Expect = 1.050e-10
Identity = 31/62 (50.00%), Postives = 43/62 (69.35%), Query Frame = 1
Query:    7 HQSNAMVAIAAVVASKPGS-----------SFIYYTKPVPKWLRRNPVGNFARTIALGAEVR 159
            HQSNAMVA+AA+V+SK  +            FIYY+KP+P++L++NP GNF R  +LG E+R
Sbjct:  140 HQSNAMVALAAIVSSKNAALGDRRTHDATKRFIYYSKPIPRYLKQNPSGNFLRATSLGMEIR 201          
BLAST of mRNA_Ecto-sp13_S_contig86247.20060.1 vs. uniprot
Match: A0A7S3K2G3_9STRA (Hypothetical protein n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3K2G3_9STRA)

HSP 1 Score: 60.8 bits (146), Expect = 1.790e-9
Identity = 28/50 (56.00%), Postives = 38/50 (76.00%), Query Frame = 1
Query:    7 HQSNAMVAIAAVVASKPGSSFIYYTKPVPKWLRRNPVGNFARTIALGAEV 156
            HQSNA VA+AA+  ++ G   +Y  KPVP+WLR+NP GN+AR +ALG E+
Sbjct:  107 HQSNACVAMAALCRAR-GLRMLYLCKPVPRWLRKNPAGNYARGLALGVEL 155          
BLAST of mRNA_Ecto-sp13_S_contig86247.20060.1 vs. uniprot
Match: A0A7S0NUG8_9EUKA (Hypothetical protein n=2 Tax=Calcidiscus leptoporus TaxID=127549 RepID=A0A7S0NUG8_9EUKA)

HSP 1 Score: 58.9 bits (141), Expect = 8.320e-9
Identity = 27/50 (54.00%), Postives = 37/50 (74.00%), Query Frame = 1
Query:    7 HQSNAMVAIAAVVASKPGSSFIYYTKPVPKWLRRNPVGNFARTIALGAEV 156
            HQSNAM+A+AA+ A +    F Y+TKP+P+WLR NPVGN  R + LG ++
Sbjct:   82 HQSNAMLALAALAAHR-NVCFQYHTKPLPQWLRHNPVGNLERALKLGMDL 130          
BLAST of mRNA_Ecto-sp13_S_contig86247.20060.1 vs. uniprot
Match: R1FIR6_EMIHU (Uncharacterized protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1FIR6_EMIHU)

HSP 1 Score: 58.2 bits (139), Expect = 1.530e-8
Identity = 27/50 (54.00%), Postives = 36/50 (72.00%), Query Frame = 1
Query:    7 HQSNAMVAIAAVVASKPGSSFIYYTKPVPKWLRRNPVGNFARTIALGAEV 156
            HQSNAM A+AAV A   G+ F+Y+TKP+P+WL   P GN  R ++LG E+
Sbjct:   70 HQSNAMAALAAV-ADAHGARFLYFTKPLPRWLAAAPSGNLERALSLGMEL 118          
BLAST of mRNA_Ecto-sp13_S_contig86247.20060.1 vs. uniprot
Match: R1DYP1_EMIHU (Selenoprotein O n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=R1DYP1_EMIHU)

HSP 1 Score: 58.2 bits (139), Expect = 1.630e-8
Identity = 27/50 (54.00%), Postives = 36/50 (72.00%), Query Frame = 1
Query:    7 HQSNAMVAIAAVVASKPGSSFIYYTKPVPKWLRRNPVGNFARTIALGAEV 156
            HQSNAM A+AAV A   G+ F+Y+TKP+P+WL   P GN  R ++LG E+
Sbjct:   70 HQSNAMAALAAV-ADAHGARFLYFTKPLPRWLAAAPSGNLERALSLGMEL 118          
BLAST of mRNA_Ecto-sp13_S_contig86247.20060.1 vs. uniprot
Match: A0A7S4CGT2_9EUGL (Hypothetical protein n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4CGT2_9EUGL)

HSP 1 Score: 57.8 bits (138), Expect = 2.200e-8
Identity = 26/49 (53.06%), Postives = 35/49 (71.43%), Query Frame = 1
Query:   10 QSNAMVAIAAVVASKPGSSFIYYTKPVPKWLRRNPVGNFARTIALGAEV 156
            QSNAM+A+A V  +K G    Y+TKP+P+WLR  P GN+A  +ALGA +
Sbjct:  171 QSNAMLALALVAKAK-GVPLTYFTKPIPRWLRETPSGNYAEALALGANI 218          
BLAST of mRNA_Ecto-sp13_S_contig86247.20060.1 vs. uniprot
Match: A0A7S4E2R7_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E2R7_9STRA)

HSP 1 Score: 55.5 bits (132), Expect = 1.390e-7
Identity = 27/50 (54.00%), Postives = 35/50 (70.00%), Query Frame = 1
Query:    7 HQSNAMVAIAAVVASKPGSSFIYYTKPVPKWLRRNPVGNFARTIALGAEV 156
            HQSNA   IAA+  +     F +  KPVP+WLR+NP GN+AR +ALGAE+
Sbjct:   81 HQSNAFPCIAALCRAFD-LPFYFVCKPVPRWLRQNPAGNYARALALGAEL 129          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig86247.20060.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D7G221_ECTSI2.670e-2395.92Similar to 1-Aminocyclopropane-1-Carboxylate Deami... [more]
A0A6H5KSQ9_9PHAE1.250e-2295.83Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2DJY8_9STRA2.020e-1468.63Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
K0TIX7_THAOC1.050e-1050.00Uncharacterized protein n=1 Tax=Thalassiosira ocea... [more]
A0A7S3K2G3_9STRA1.790e-956.00Hypothetical protein n=1 Tax=Aureoumbra lagunensis... [more]
A0A7S0NUG8_9EUKA8.320e-954.00Hypothetical protein n=2 Tax=Calcidiscus leptoporu... [more]
R1FIR6_EMIHU1.530e-854.00Uncharacterized protein n=1 Tax=Emiliania huxleyi ... [more]
R1DYP1_EMIHU1.630e-854.00Selenoprotein O n=1 Tax=Emiliania huxleyi TaxID=29... [more]
A0A7S4CGT2_9EUGL2.200e-853.06Hypothetical protein n=1 Tax=Eutreptiella gymnasti... [more]
A0A7S4E2R7_9STRA1.390e-754.00Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig86247contigEcto-sp13_S_contig86247:237..395 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score99.0
Seed ortholog evalue7.1e-19
Seed eggNOG ortholog2880.D7G221
Model size159
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.1-aminocyclopropane-1-carboxylate deaminase activity
EggNOG OGs2RXQ8@2759,COG2515@1
Cds size159
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464135.2044077-CDS-Ecto-sp13_S_contig86247:236..3951681464135.2044077-CDS-Ecto-sp13_S_contig86247:236..395Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig86247 237..395 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig86247.20060.1prot_Ecto-sp13_S_contig86247.20060.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig86247 237..395 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig86247.20060.1

>prot_Ecto-sp13_S_contig86247.20060.1 ID=prot_Ecto-sp13_S_contig86247.20060.1|Name=mRNA_Ecto-sp13_S_contig86247.20060.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=53bp
MIHQSNAMVAIAAVVASKPGSSFIYYTKPVPKWLRRNPVGNFARTIALGA
EVR
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mRNA from alignment at Ecto-sp13_S_contig86247:237..395-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig86247.20060.1 ID=mRNA_Ecto-sp13_S_contig86247.20060.1|Name=mRNA_Ecto-sp13_S_contig86247.20060.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=159bp|location=Sequence derived from alignment at Ecto-sp13_S_contig86247:237..395- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATACACCAGAGCAACGCCATGGTGGCGATCGCGGCGGTGGTTGCCAG CAAGCCCGGGTCATCCTTCATCTACTACACCAAGCCGGTGCCCAAGTGGC TGAGGAGGAACCCCGTCGGGAACTTCGCGAGAACAATAGCTCTCGGGGCG GAGGTGAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig86247:237..395-

>mRNA_Ecto-sp13_S_contig86247.20060.1 ID=mRNA_Ecto-sp13_S_contig86247.20060.1|Name=mRNA_Ecto-sp13_S_contig86247.20060.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=159bp|location=Sequence derived from alignment at Ecto-sp13_S_contig86247:237..395- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATACACCAGAGCAACGCCATGGTGGCGATCGCGGCGGTGGTTGCCAG
CAAGCCCGGGTCATCCTTCATCTACTACACCAAGCCGGTGCCCAAGTGGC
TGAGGAGGAACCCCGTCGGGAACTTCGCGAGAACAATAGCTCTCGGGGCG
GAGGTGAGG
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