mRNA_Ecto-sp13_S_contig8614.20048.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8614.20048.1
Unique NamemRNA_Ecto-sp13_S_contig8614.20048.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8614.20048.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8614contigEcto-sp13_S_contig8614:3..4134 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score64.3
Seed ortholog evalue1.4e-07
Seed eggNOG ortholog2880.D7FUK0
Model size1116
Hectar predicted targeting categorysignal peptide
Exons4
EggNOG free text desc.Glycosyl Hydrolase Family 88
EggNOG OGs2CYCX@1,2S3MN@2759
Cds size1116
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464134.2215383-CDS-Ecto-sp13_S_contig8614:2..7451681464134.2215383-CDS-Ecto-sp13_S_contig8614:2..745Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8614 3..745 -
1681464134.2330542-CDS-Ecto-sp13_S_contig8614:1183..12611681464134.2330542-CDS-Ecto-sp13_S_contig8614:1183..1261Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8614 1184..1261 -
1681464134.2439857-CDS-Ecto-sp13_S_contig8614:1745..19341681464134.2439857-CDS-Ecto-sp13_S_contig8614:1745..1934Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8614 1746..1934 -
1681464134.254636-CDS-Ecto-sp13_S_contig8614:4028..41341681464134.254636-CDS-Ecto-sp13_S_contig8614:4028..4134Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8614 4029..4134 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8614.20048.1prot_Ecto-sp13_S_contig8614.20048.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8614 3..4134 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8614.20048.1

>prot_Ecto-sp13_S_contig8614.20048.1 ID=prot_Ecto-sp13_S_contig8614.20048.1|Name=mRNA_Ecto-sp13_S_contig8614.20048.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=372bp
MGSRNARCWGSTAAAVTLTAKVFLGSVGFGALPVVGTTCSNGLAGVEDPL
GKVCCAPSCSQCAGGECGGFGGALCCETNVTASSIYCDVALEAPCILGDV
PGSLSPLISPSKSPSVAPTLTPPSGALTLTTAPKEQMPRGPPMPSISPTQ
TEGLDDGIAHTSIAAASVVGSFLLVVLVLTCAGLKSHCDEKRKSIRRSLE
ALFARGSFWGAMFVLFGLLIALNIYNYSSPWAAVIIFATFVTWFEVVAWF
VAFQTGTPATVSLDCPCRACRTACRVEDGNSSDAGSRSSRSSSSRSSSRS
SSACSTPAVAVSPRRPCSSRGRGGIQAPPPAVARCCAPSPAVVRPAADSF
FPETVVSAVYFPSSTHTVFVPS
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mRNA from alignment at Ecto-sp13_S_contig8614:3..4134-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8614.20048.1 ID=mRNA_Ecto-sp13_S_contig8614.20048.1|Name=mRNA_Ecto-sp13_S_contig8614.20048.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4132bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8614:3..4134- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCTCGCGAAATGCACGTTGCTGGGGCTCCACTGCTGCTGCTGTCAC
GCTGACTGCGAAAGTTTTCCTGGGTTCAGTTGGGTTTGGCGCCCTTCCCG
TCGTCGGTAAGACAAAATGTTTTCGCGTGCACTACCGCAGAAATGTACTT
CAACCGGCGGCAGTTTTGGCGCACTTTGGGGTTCATAGTTCTTTGAGGGT
CATCCTACGAATAGCCACCACATACATAGATTTTTTGTACAGGGGTTCGT
ACGCGAGCTCACAAGTGTTGCATGGGCTCTTGGAGTTTTTGAGATTTTGC
AGGCTTAACTCTTACCTACCAACCGCTGGCGCTTTGTTCAGTTGAGTTGT
ATTGCACGGTACGTGGGCTGCTCGGAACCGCCATCACGTTCCAGTTTAAG
CACGAGCACTATGATGTTTCGAAGTCTGCTGCTCCTGTCCTGATAGGCGA
CGTGACACATAGATTGCAGCCTGGTGCAAGGCATTGCGTTCTGGAGGCTG
TGTTCATACCGTAATCGTTCACACGTCCTTCAATGCGGGGACGTCGGTTA
CTCCGAACAAATAACCCTTACTCACATATACCGAACGAAAAATGAACAAA
ACCCAAGGTTTGGAGTTGTACCGGCCGGTAAGATACCAAAAAACCCGGGG
ATATAACATGCCCCGTCCCAGGGGAAATCAACCGTTCCATTCGTTGTGCT
GCTGGTGCTGCTCTTTGTGTAGGTACACCCAAAAAAGTATTAGCTTTCGA
AGTTTTTGCGACCGCCTGTTCTTCTTTGCGCTTGACCGCCTTTCTCTCTG
TTCGTGAGAGATGCATATTCCGTTGTACGTTGTTTGGTCTTTGTTGACTC
TAACAACGCTCCGAACAAATTTTGGTAGCAGTCACTCGTGCAGATAGGTG
AGTTCAGCAGCAAGCACCACGCTTTCTTGGGTCTCATTGTTCGTCGTTGG
GCAGGCAAGCATGGACGCAGGGATGCGCTTGTGTAGCACCCCTCTTCCAC
AGCTAGCTCCACAGCTTGACAGCGACGATAGAAAAATACTCAAAAGATGC
GATGAAAGCAAGATTGTGATGAAGTTCCCGCAGGTCCGTGTCTCCCTCTA
CAAGCAACGAGGGAAAAGAAAAAGAACCGGGAGAAACTACCACCCCGAGA
AAGTCAGAAAAACAAAATTGTCAACGAGCAAACCATCACCGCCTTCGTTA
CATTCCCCCGCCATTCCTAGCGCCAAAGAAGAGCGATACTCCTCTACTCG
CCTTCTCGTGTAGTTGAAATATGAAGCAAAACAGAAAAGCGGGCGAGCAC
AGGCTCGCCTACACTTCTACCAGCTCGTCACTGTACGATAGCCGTCTGAT
TGTGCCAAGGTCGCCGCTCGCGAGGGCAGGGTTAGGGTTTGGTTAGAGGG
CTGGGGCAATCTCCGCAAATGAGACTCCCGCAGAGTACGGTTCACCCCCC
CCTGTGCTTGGCTTTACCCACTCGGCAGCGTATTTAGAGACATTTTCCCG
GAAAGGCTAAGGGACATCCCAAGTAGGCATTCATGTGGCCTCCTTCTGAT
GGGTCGCTATTCCGCCGCTCTTTCGTTTCGTCCGAGTAGAGGAGTAACGG
AAACCGAACTCACGGCAACTATCCCTTTCCGCAAACCTCATTGACTGTGC
AGAGAGATTTGGACGTCAACGTTCTTCCTTAATGTTCCAGATTCCCTCCC
TCGTTTGTTTGGCTCCGCTGCTCGTGATGACGCTCGACTCATCGTCGGCG
TGCGTTCGGCGCTGTATGCATCCAGTGTCCGCGGTGGCTTAGCCCATTCC
CGTACCGTCAGGTAGCGGCACCCTTGTTGGTTACACCATCGGAGAGCGTT
GTGGATGGTGTTTTTGCCGGCAGACTTTGGAAGAGGGAGTCTGACCAAGT
CACCCGTTGCTCCGGTCCAATAGCAACCTCACTCGTTTATTCATGTTCTA
GTTCACATCGCGTCTGCCGAACTCGAGGAAAAAAGTCTTTCTTCAAAAGG
CTTACTTGTACATTCTGCGTCGGTTCCGGGGTGTGCTGCATATAGGTCAA
GGGTCTGCTGTTTCGGACGAGCAAGTGGTTATCTCCAGGACTCCCCGCCT
CCCTTTACAAACCTCATCCCAGCAACAGCCGTCGTGCGGTGTCAATACAC
GCCACGCCATCGATCCCCCGCTGCTTGCTGTACCGCGTGAATTTTTTCAG
GCACGACTTGCAGCAATGGCTTGGCAGGGGTTGAGGATCCCCTCGGCAAA
GTGTGCTGCGCACCCTCGTGTTCGCAATGTGCCGGCGGAGAGTGCGGGGG
GTTCGGCGGCGCGCTGTGCTGCGAAACCAACGTAACTGCGTCGAGCATAT
ATTGTGATGTCGCGCTAGAGGCCCCGTGTATCCTCGGTGGTGAGTCTCAA
TCTACCTGTGCATCGTGTGCGAAAAGAACGGACCGGGAGGGGGGGCGTAC
TCATGCTTCGCATGCCTTATGGCGAGTGGCTACGCCAGAGACCACGCGTC
CTCGATAGGACGGCCAGCAGGAATAGGTGTACACCTGGGTATGGGGTTTC
TTCGTCATGATCTATTTGATAACTTTCTCGCCATATACGGAGCAGCACCA
AAGAGGAGTGATAATTGTTTGTGATGCCTCGGAGGAGGCAAGAGCAAAGT
TATGTAGGACGCCATCCAGACCTCAAGCCCCAAACGGTCGGGGTGCTGAA
AGCCAAAGCTTGTACACGAAGCATTTATCGTGTGGTGTTGAAAAATGTTC
GAATACGCTGTATTACGTACAAAATAGCCGCAACTGACGGTTTCATTGGC
TCCCCCTCCCCCCTCGTTTTCTGTCGTGCCCCCGGGGATGGTCGTCTTGT
CGGGCAATTTGCCGGTCGTTTAGATGTGCCGGGATCGCTTTCTCCGCTTA
TATCTCCTTCGAAGTCACCGTCAGTCGCGCCTACCTTGACTCCACCTTCA
GGTATGTGACTAAAGCGTCTCGGTGTGATTGAACCCCTTTTCTCCAAAAA
CGCATCGTGTGACTTCACGGCACCACGCGCAACTTACGCCGTTCCCTTGA
AGCAGGAGGTACGACGAGTAGCTCGAAACCGGGCAAATCACGGACGCAAA
GTCAATTTGTGCTATCCATGAGAGAGGTTCGGCCGCTCGATCGTGTGCAT
CTTCGTCTATCGTCACGGTCCATGCTTGCGGATACCTCGGTGACAGGTCA
AGGTTATCGGCCGCCCGGCTAAGACAACGCGATCGATCTTGACGCTTCAC
ACGAAACTTCTCGGTGTTGGGTTTCTGTTTCCAGGACCACGGTTTCGTTT
TCGTTGGTCAGTTCGCCAACGAAAACGTCCCGAGCCGAGGAGATGCCGCG
ACCATAACAAACTGGACCACACGCTCCCTCCTCCACCAGGTGCCCTGACT
CTGACAACGGCTCCTAAGGAACAAATGCCAAGGGGGCCGCCGATGCCGTC
CATCTCGCCCACCCAGACCGAGGGGCTGGACGACGGCATCGCTCACACGT
CAATCGCCGCCGCTTCCGTGGTGGGGAGCTTCCTGTTGGTCGTCCTGGTG
CTGACGTGCGCCGGGCTGAAGTCGCATTGCGACGAGAAACGGAAGAGTAT
TCGGCGGTCCTTGGAGGCGTTGTTTGCCCGGGGGTCTTTCTGGGGCGCCA
TGTTCGTCCTCTTCGGCCTGCTCATCGCCCTCAACATCTACAACTACTCT
TCGCCGTGGGCGGCGGTGATAATCTTCGCCACCTTCGTCACGTGGTTCGA
GGTGGTGGCGTGGTTCGTGGCGTTCCAGACGGGCACGCCGGCGACGGTGT
CGCTGGACTGCCCGTGCCGCGCGTGCCGCACTGCCTGTCGGGTGGAAGAC
GGCAACAGCAGCGACGCCGGCAGCAGGAGCAGCAGGAGCAGCAGCAGTAG
AAGCAGCAGTAGAAGCAGCAGTGCCTGCAGTACCCCGGCCGTTGCCGTTT
CGCCTAGGCGACCGTGTTCATCTCGGGGGCGAGGGGGGATACAGGCTCCC
CCACCTGCTGTTGCGAGATGTTGTGCTCCCTCTCCCGCTGTTGTGAGGCC
TGCCGCGGACTCATTCTTCCCGGAAACCGTTGTCAGCGCCGTGTATTTCC
CGTCCAGCACACATACAGTGTTTGTCCCGTCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8614:3..4134-

>mRNA_Ecto-sp13_S_contig8614.20048.1 ID=mRNA_Ecto-sp13_S_contig8614.20048.1|Name=mRNA_Ecto-sp13_S_contig8614.20048.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1116bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8614:3..4134- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCTCGCGAAATGCACGTTGCTGGGGCTCCACTGCTGCTGCTGTCAC
GCTGACTGCGAAAGTTTTCCTGGGTTCAGTTGGGTTTGGCGCCCTTCCCG
TCGTCGGCACGACTTGCAGCAATGGCTTGGCAGGGGTTGAGGATCCCCTC
GGCAAAGTGTGCTGCGCACCCTCGTGTTCGCAATGTGCCGGCGGAGAGTG
CGGGGGGTTCGGCGGCGCGCTGTGCTGCGAAACCAACGTAACTGCGTCGA
GCATATATTGTGATGTCGCGCTAGAGGCCCCGTGTATCCTCGGTGATGTG
CCGGGATCGCTTTCTCCGCTTATATCTCCTTCGAAGTCACCGTCAGTCGC
GCCTACCTTGACTCCACCTTCAGGTGCCCTGACTCTGACAACGGCTCCTA
AGGAACAAATGCCAAGGGGGCCGCCGATGCCGTCCATCTCGCCCACCCAG
ACCGAGGGGCTGGACGACGGCATCGCTCACACGTCAATCGCCGCCGCTTC
CGTGGTGGGGAGCTTCCTGTTGGTCGTCCTGGTGCTGACGTGCGCCGGGC
TGAAGTCGCATTGCGACGAGAAACGGAAGAGTATTCGGCGGTCCTTGGAG
GCGTTGTTTGCCCGGGGGTCTTTCTGGGGCGCCATGTTCGTCCTCTTCGG
CCTGCTCATCGCCCTCAACATCTACAACTACTCTTCGCCGTGGGCGGCGG
TGATAATCTTCGCCACCTTCGTCACGTGGTTCGAGGTGGTGGCGTGGTTC
GTGGCGTTCCAGACGGGCACGCCGGCGACGGTGTCGCTGGACTGCCCGTG
CCGCGCGTGCCGCACTGCCTGTCGGGTGGAAGACGGCAACAGCAGCGACG
CCGGCAGCAGGAGCAGCAGGAGCAGCAGCAGTAGAAGCAGCAGTAGAAGC
AGCAGTGCCTGCAGTACCCCGGCCGTTGCCGTTTCGCCTAGGCGACCGTG
TTCATCTCGGGGGCGAGGGGGGATACAGGCTCCCCCACCTGCTGTTGCGA
GATGTTGTGCTCCCTCTCCCGCTGTTGTGAGGCCTGCCGCGGACTCATTC
TTCCCGGAAACCGTTGTCAGCGCCGTGTATTTCCCGTCCAGCACACATAC
AGTGTTTGTCCCGTCC
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