mRNA_Ecto-sp13_S_contig8613.20047.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8613.20047.1
Unique NamemRNA_Ecto-sp13_S_contig8613.20047.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8613.20047.1 vs. uniprot
Match: D8LDX0_ECTSI (Aspartate Aminotransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDX0_ECTSI)

HSP 1 Score: 432 bits (1110), Expect = 1.680e-142
Identity = 217/220 (98.64%), Postives = 219/220 (99.55%), Query Frame = 1 
Query:    1 KERCEELAAVLSEEGGKGAGCWVLADEIYERITYDTPHVAFASLPGMLERTMTVNGFSKSHAMTGYRLGYLAAPPIITKAVTTIQGQITSCASSISQAAGLAALAVTDGEMQLSFDVMRKKRDFVLKRLSEMPDLVTAVPEGAFYVFPDVSAHFGKSAPDGTTIGGATDLCLYLLRAHSVALVTGDGFGYPKGIRISYAASMEDIDEALGEFDKCISSLQ 660
            KERCEELAAVLSEEGGKGAGCWVLADEIYERITYDTPHVAFASLPGM ERTMTVNGFSKSHAMTGYRLGYLAAPPIITKAVTTIQGQITSCASSISQAAGLAALAVTDGEMQLSFDVMRKKRDFVLKRLSEMP+LVTAVPEGAFYVFPDVSAHFGKSAPDGTTIGGATDLCLYLLRAHSVALVTGDGFGYPKGIRISYAASMEDIDEALGEFDKCISSL+
Sbjct:  250 KERCEELAAVLSEEGGKGAGCWVLADEIYERITYDTPHVAFASLPGMFERTMTVNGFSKSHAMTGYRLGYLAAPPIITKAVTTIQGQITSCASSISQAAGLAALAVTDGEMQLSFDVMRKKRDFVLKRLSEMPNLVTAVPEGAFYVFPDVSAHFGKSAPDGTTIGGATDLCLYLLRAHSVALVTGDGFGYPKGIRISYAASMEDIDEALGEFDKCISSLE 469
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8613.20047.1 vs. uniprot
Match: A0A097IUV0_9PHAE (Aspartate aminotransferase n=1 Tax=Colpomenia sinuosa TaxID=87236 RepID=A0A097IUV0_9PHAE)

HSP 1 Score: 401 bits (1030), Expect = 2.010e-130
Identity = 201/219 (91.78%), Postives = 209/219 (95.43%), Query Frame = 1 
Query:    1 KERCEELAAVLSEEGGKGAGCWVLADEIYERITYDTPHVAFASLPGMLERTMTVNGFSKSHAMTGYRLGYLAAPPIITKAVTTIQGQITSCASSISQAAGLAALAVTDGEMQLSFDVMRKKRDFVLKRLSEMPDLVTAVPEGAFYVFPDVSAHFGKSAPDGTTIGGATDLCLYLLRAHSVALVTGDGFGYPKGIRISYAASMEDIDEALGEFDKCISSL 657
            KERCEELAAVLSEEGGKG+GCWVLADEIYERITYDTPHVAFA++PGM ERTMTVNGFSKSHAMTGYRLGYLAAPPIITKAVTTIQGQITSCASSISQAAGLAALAV+D EMQ SFDVMRKKRDFVLKRLSEMP LVTAVP+GAFYVFPDVSAHFGKSAPDGT IGG TDLCLYLLRAHSVALVTGDGFGY K IRISYAASME+I+EAL EFDKC+ SL
Sbjct:  253 KERCEELAAVLSEEGGKGSGCWVLADEIYERITYDTPHVAFATIPGMFERTMTVNGFSKSHAMTGYRLGYLAAPPIITKAVTTIQGQITSCASSISQAAGLAALAVSDEEMQASFDVMRKKRDFVLKRLSEMPGLVTAVPQGAFYVFPDVSAHFGKSAPDGTVIGGPTDLCLYLLRAHSVALVTGDGFGYSKCIRISYAASMEEIEEALAEFDKCLCSL 471
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8613.20047.1 vs. uniprot
Match: A0A097IUR0_SCYLO (Aspartate aminotransferase n=3 Tax=Scytosiphonaceae TaxID=2891 RepID=A0A097IUR0_SCYLO)

HSP 1 Score: 396 bits (1017), Expect = 1.730e-128
Identity = 196/219 (89.50%), Postives = 207/219 (94.52%), Query Frame = 1 
Query:    1 KERCEELAAVLSEEGGKGAGCWVLADEIYERITYDTPHVAFASLPGMLERTMTVNGFSKSHAMTGYRLGYLAAPPIITKAVTTIQGQITSCASSISQAAGLAALAVTDGEMQLSFDVMRKKRDFVLKRLSEMPDLVTAVPEGAFYVFPDVSAHFGKSAPDGTTIGGATDLCLYLLRAHSVALVTGDGFGYPKGIRISYAASMEDIDEALGEFDKCISSL 657
            KERCEELAAVLSEEGGKG+GCWVLADEIYERITYDTPHVAFA++PGM ERTMTVNGFSKSH+MTGYRLGYLA+PPIITKAVT IQGQITSCASSISQAAGL AL V+D EMQ +FDVMRKKRDFV+KRLSEMPDL TAVP+GAFYVFPDVSAHFGKSAPDGT IGGATDLCLYLLRAHSVALVTGDGFGY K IRISYAASME+IDEAL EFDKC+ SL
Sbjct:  253 KERCEELAAVLSEEGGKGSGCWVLADEIYERITYDTPHVAFATIPGMFERTMTVNGFSKSHSMTGYRLGYLASPPIITKAVTIIQGQITSCASSISQAAGLVALTVSDEEMQATFDVMRKKRDFVIKRLSEMPDLATAVPQGAFYVFPDVSAHFGKSAPDGTVIGGATDLCLYLLRAHSVALVTGDGFGYSKCIRISYAASMEEIDEALAEFDKCLCSL 471
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8613.20047.1 vs. uniprot
Match: A0A097IUR7_9PHAE (Aspartate aminotransferase n=1 Tax=Punctaria latifolia TaxID=90013 RepID=A0A097IUR7_9PHAE)

HSP 1 Score: 395 bits (1014), Expect = 3.760e-128
Identity = 199/220 (90.45%), Postives = 209/220 (95.00%), Query Frame = 1 
Query:    1 KERCEELAAVLSEEGGKGAGCWVLADEIYERITYDTPHVAFASLPGMLERTMTVNGFSKSHAMTGYRLGYLAAPPIITKAVTTIQGQITSCASSISQAAGLAALAVTDGEMQLSFDVMRKKRDFVLKRLSEMPDLVTAVPEGAFYVFPDVSAHFGKSAPDGTTIGGATDLCLYLLRAHSVALVTGDGFGYPKGIRISYAASMEDIDEALGEFDKCISSLQ 660
            KERCEELAAVLSE+  KG+GCWVLADEIYER+TYDT HVAFA++PGM ERTMTVNGFSKSH+MTGYRLGY+AAPPII KAVTTIQGQITSCASSISQAAGLAALAV D EMQ SFDVMR+KRDFVLKRLSEM DLVTAVP+GAFYVFPDVSAHFGKSAPDGT IGGATDLCLYLLRAH VALVTGDGFGYPKGIRISYAASMEDIDEALGEFDKCISSL+
Sbjct:  246 KERCEELAAVLSEDX-KGSGCWVLADEIYERLTYDTQHVAFATVPGMFERTMTVNGFSKSHSMTGYRLGYIAAPPIIAKAVTTIQGQITSCASSISQAAGLAALAVPDEEMQASFDVMREKRDFVLKRLSEMSDLVTAVPQGAFYVFPDVSAHFGKSAPDGTVIGGATDLCLYLLRAHCVALVTGDGFGYPKGIRISYAASMEDIDEALGEFDKCISSLE 464
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8613.20047.1 vs. uniprot
Match: A0A097IUP5_UNDPI (Aspartate aminotransferase n=2 Tax=Undaria pinnatifida TaxID=74381 RepID=A0A097IUP5_UNDPI)

HSP 1 Score: 374 bits (961), Expect = 2.550e-120
Identity = 184/220 (83.64%), Postives = 201/220 (91.36%), Query Frame = 1 
Query:    1 KERCEELAAVLSEEGGKGAGCWVLADEIYERITYDTPHVAFASLPGMLERTMTVNGFSKSHAMTGYRLGYLAAPPIITKAVTTIQGQITSCASSISQAAGLAALAVTDGEMQLSFDVMRKKRDFVLKRLSEMPDLVTAVPEGAFYVFPDVSAHFGKSAPDGTTIGGATDLCLYLLRAHSVALVTGDGFGYPKGIRISYAASMEDIDEALGEFDKCISSLQ 660
            KERCEELAAVLSEEGGKG G WV++DEIYERITYDTPHVAFAS+PGM ERTMTVNGFSKSHAMTGYRLGYLAA PII K   TIQGQITSCASSISQAAG+AAL V+D EMQ SFDVMR+KRDFVLKRL+EMP L+TAVPEGAFYVFPDVS+H+GK+APDGT IGGATDLCLYLLR HSVA+VTG+GFGYPKGIR+SYAASME I EAL E +KC+ SL+
Sbjct:  237 KERCEELAAVLSEEGGKGKGVWVMSDEIYERITYDTPHVAFASIPGMFERTMTVNGFSKSHAMTGYRLGYLAATPIIVKTAATIQGQITSCASSISQAAGIAALDVSDAEMQTSFDVMRQKRDFVLKRLAEMPGLITAVPEGAFYVFPDVSSHYGKTAPDGTVIGGATDLCLYLLRVHSVAVVTGEGFGYPKGIRLSYAASMEIITEALAELEKCLVSLK 456
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8613.20047.1 vs. uniprot
Match: A0A097IUS5_SACJA (Aspartate aminotransferase n=2 Tax=Saccharina TaxID=309357 RepID=A0A097IUS5_SACJA)

HSP 1 Score: 374 bits (960), Expect = 3.600e-120
Identity = 186/220 (84.55%), Postives = 199/220 (90.45%), Query Frame = 1 
Query:    1 KERCEELAAVLSEEGGKGAGCWVLADEIYERITYDTPHVAFASLPGMLERTMTVNGFSKSHAMTGYRLGYLAAPPIITKAVTTIQGQITSCASSISQAAGLAALAVTDGEMQLSFDVMRKKRDFVLKRLSEMPDLVTAVPEGAFYVFPDVSAHFGKSAPDGTTIGGATDLCLYLLRAHSVALVTGDGFGYPKGIRISYAASMEDIDEALGEFDKCISSLQ 660
            KERCEELAAVLSEEGGKG G WVLADEIYERITYDTPHVAFA++PGM ERTMTVNGFSKSHAMTGYRLGYLAA PII KA T IQGQITSCASSISQAAGLAAL V+D EMQ SFD+MR+KRDFV+KRL EMP L TAVPEGAFYVFPDVS H+GK+APDGT IGGATDLCLYLLR HSVALVTG+GFGYPKGIR+SYAASME I EAL E +KC+ SL+
Sbjct:  237 KERCEELAAVLSEEGGKGKGVWVLADEIYERITYDTPHVAFATMPGMFERTMTVNGFSKSHAMTGYRLGYLAATPIIIKAATIIQGQITSCASSISQAAGLAALNVSDAEMQTSFDIMRQKRDFVVKRLQEMPGLTTAVPEGAFYVFPDVSTHYGKTAPDGTVIGGATDLCLYLLRVHSVALVTGEGFGYPKGIRLSYAASMEAITEALEELEKCLVSLK 456
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8613.20047.1 vs. uniprot
Match: A0A097IUT5_9PHAE (Aspartate aminotransferase n=1 Tax=Desmarestia viridis TaxID=62313 RepID=A0A097IUT5_9PHAE)

HSP 1 Score: 369 bits (948), Expect = 3.860e-118
Identity = 179/220 (81.36%), Postives = 201/220 (91.36%), Query Frame = 1 
Query:    1 KERCEELAAVLSEEGGKGAGCWVLADEIYERITYDTPHVAFASLPGMLERTMTVNGFSKSHAMTGYRLGYLAAPPIITKAVTTIQGQITSCASSISQAAGLAALAVTDGEMQLSFDVMRKKRDFVLKRLSEMPDLVTAVPEGAFYVFPDVSAHFGKSAPDGTTIGGATDLCLYLLRAHSVALVTGDGFGYPKGIRISYAASMEDIDEALGEFDKCISSLQ 660
            KE CEELAAVLSE+GGKG G WV+ADEIYERI YDTPHVAFA +PGM ERTMTVNGFSKSHAMTGYR+GYLAAPP+I KAVTT+QGQ+TSCAS+ISQAAG+AAL V+D EMQ SFD+MR KRDFV+KR++ +P L TA P+GAFYV PDVS+HFGK+APDGT IGGATDLCLYLLRAHSVALVTG+GFGYPKGIRISYAASMED+ EALGEFD+CI SL+
Sbjct:  254 KELCEELAAVLSEKGGKGEGVWVMADEIYERIVYDTPHVAFAGMPGMWERTMTVNGFSKSHAMTGYRIGYLAAPPVIVKAVTTLQGQLTSCASAISQAAGMAALEVSDEEMQASFDIMRAKRDFVMKRVAGIPGLTTAEPQGAFYVLPDVSSHFGKTAPDGTVIGGATDLCLYLLRAHSVALVTGEGFGYPKGIRISYAASMEDLAEALGEFDQCIRSLK 473
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8613.20047.1 vs. uniprot
Match: A0A097IUX3_9PHAE (Aspartate aminotransferase n=1 Tax=Sargassum thunbergii TaxID=127542 RepID=A0A097IUX3_9PHAE)

HSP 1 Score: 362 bits (930), Expect = 1.840e-115
Identity = 177/220 (80.45%), Postives = 199/220 (90.45%), Query Frame = 1 
Query:    1 KERCEELAAVLSEEGGKGAGCWVLADEIYERITYDTPHVAFASLPGMLERTMTVNGFSKSHAMTGYRLGYLAAPPIITKAVTTIQGQITSCASSISQAAGLAALAVTDGEMQLSFDVMRKKRDFVLKRLSEMPDLVTAVPEGAFYVFPDVSAHFGKSAPDGTTIGGATDLCLYLLRAHSVALVTGDGFGYPKGIRISYAASMEDIDEALGEFDKCISSLQ 660
            K++CEELAAVLSEEGGKG G WV+ADEIYERITYDTPH AFASLPGM ERTMTVNGFSKSHAMTGYRLGY+A PP+I KA+ TIQGQ+TSCASSISQAAGLAAL V D EMQ SFDVMR+KRDFVLK LS+ P + TAVP+GAFYV PDVSAHFGK APDGT IGGATDLC YLLRAH VALVTG+ FG+P+GIRISYAAS+E+I+EALG+F++C+SSL+
Sbjct:  253 KQQCEELAAVLSEEGGKGDGVWVMADEIYERITYDTPHAAFASLPGMYERTMTVNGFSKSHAMTGYRLGYIAGPPVIVKAIATIQGQLTSCASSISQAAGLAALRVRDDEMQHSFDVMREKRDFVLKCLSKTPGVKTAVPQGAFYVLPDVSAHFGKEAPDGTVIGGATDLCRYLLRAHRVALVTGESFGFPRGIRISYAASLEEINEALGQFEECLSSLK 472
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8613.20047.1 vs. uniprot
Match: A0A836C900_9STRA (Aspartate aminotransferase (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C900_9STRA)

HSP 1 Score: 302 bits (773), Expect = 3.210e-92
Identity = 152/220 (69.09%), Postives = 174/220 (79.09%), Query Frame = 1 
Query:    1 KERCEELAAVLSEEGGKGAGCWVLADEIYERITYDTPHVAFASLPGMLERTMTVNGFSKSHAMTGYRLGYLAAPPIITKAVTTIQGQITSCASSISQAAGLAALAVTDGEMQLSFDVMRKKRDFVLKRLSEMPDLVTAVPEGAFYVFPDVSAHFGKSAPDGTTIGGATDLCLYLLRAHSVALVTGDGFGYPKGIRISYAASMEDIDEALGEFDKCISSLQ 660
            +E CEELAAVL E        WVLADEIYERI YD PH +F ++PGM ERTM +NGFSKSHAMTGYRLGY+AAP  I KAVTTIQGQITSCASSI QAAGLAAL V D EMQLSFD MR+KRDFV++RL  +P +  A P+GAFYV PDVSA++G  APDGT I G T LCLYLLRAH VALVTG+GFGY  G+R+SYA SM D+  AL E ++C++SLQ
Sbjct:  246 RELCEELAAVLREPAASKV--WVLADEIYERIVYDVPHYSFVAIPGMKERTMLINGFSKSHAMTGYRLGYMAAPLPIVKAVTTIQGQITSCASSIGQAAGLAALGVADEEMQLSFDTMRRKRDFVMERLRRIPKINVAEPQGAFYVLPDVSAYYGMHAPDGTLIDGPTPLCLYLLRAHKVALVTGEGFGYFNGVRLSYATSMHDLTLALNELEQCLASLQ 463
[Close]
BLAST of mRNA_Ecto-sp13_S_contig8613.20047.1 vs. uniprot
Match: A0A7S4DF05_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DF05_HETAK)

HSP 1 Score: 250 bits (639), Expect = 4.000e-73
Identity = 123/220 (55.91%), Postives = 161/220 (73.18%), Query Frame = 1 
Query:    1 KERCEELAAVLSEEGGKGAGCWVLADEIYERITYDTPHVAFASLPGMLERTMTVNGFSKSHAMTGYRLGYLAAPPIITKAVTTIQGQITSCASSISQAAGLAALAVTDGEMQLSFDVMRKKRDFVLKRLSEMPDLVTAVPEGAFYVFPDVSAHFGKSAPDGTTIGGATDLCLYLLRAHSVALVTGDGFGYPKGIRISYAASMEDIDEALGEFDKCISSLQ 660
            K+  + LA VL +   K    WVL+DEIYER+ YD  HV+FA+LPG  +RT+ VNGFSKSHAMTGYRLGY+A PP + KAVTT+QGQ+TSCASS++QAAG+AAL V D E+Q S D+M+KKRDFV+++L  +P +    P+GAFYV PD+S++FGK  P G  I   T  C+YLL+    A V G+GFG    +RISYAAS E+I+ AL +F  C++SL+
Sbjct:  194 KQHLDALAEVLRKPENKDI--WVLSDEIYERLVYDCEHVSFAALPGFKDRTIIVNGFSKSHAMTGYRLGYMAGPPAVVKAVTTVQGQLTSCASSLAQAAGVAALKVPDEELQESIDLMKKKRDFVMEKLRSLPGVKCPEPKGAFYVLPDISSYFGKRTPAGEIIKDDTAFCIYLLKEFKTAFVPGEGFGSKGTVRISYAASFEEIEAALNQFSACLASLE 411
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8613.20047.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LDX0_ECTSI1.680e-14298.64Aspartate Aminotransferase n=2 Tax=Ectocarpus TaxI... [more]
A0A097IUV0_9PHAE2.010e-13091.78Aspartate aminotransferase n=1 Tax=Colpomenia sinu... [more]
A0A097IUR0_SCYLO1.730e-12889.50Aspartate aminotransferase n=3 Tax=Scytosiphonacea... [more]
A0A097IUR7_9PHAE3.760e-12890.45Aspartate aminotransferase n=1 Tax=Punctaria latif... [more]
A0A097IUP5_UNDPI2.550e-12083.64Aspartate aminotransferase n=2 Tax=Undaria pinnati... [more]
A0A097IUS5_SACJA3.600e-12084.55Aspartate aminotransferase n=2 Tax=Saccharina TaxI... [more]
A0A097IUT5_9PHAE3.860e-11881.36Aspartate aminotransferase n=1 Tax=Desmarestia vir... [more]
A0A097IUX3_9PHAE1.840e-11580.45Aspartate aminotransferase n=1 Tax=Sargassum thunb... [more]
A0A836C900_9STRA3.210e-9269.09Aspartate aminotransferase (Fragment) n=1 Tax=Trib... [more]
A0A7S4DF05_HETAK4.000e-7355.91Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8613contigEcto-sp13_S_contig8613:217..5608 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score435.6
Seed ortholog evalue1.3e-119
Seed eggNOG ortholog2880.D8LDX0
Preferred nameASP2
Model size1929
KEGG rclassRC00006
KEGG koko:K12586,ko:K15849
KEGG ReactionR00694,R00734,R01731,R07276
KEGG Pathwayko00350,ko00360,ko00400,ko00950,ko00960,ko01100,ko01110,ko01130,ko01230,ko03018,map00350,map00360,map00400,map00950,map00960,map01100,map01110,map01130,map01230,map03018
KEGG ModuleM00040,M00391
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0003006,GO:0003674,GO:0003824,GO:0004069,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006725,GO:0006807,GO:0007275,GO:0008150,GO:0008152,GO:0008483,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009095,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009790,GO:0009791,GO:0009793,GO:0009987,GO:0010154,GO:0016053,GO:0016740,GO:0016769,GO:0019438,GO:0019752,GO:0022414,GO:0032501,GO:0032502,GO:0033853,GO:0033854,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0046394,GO:0048316,GO:0048608,GO:0048731,GO:0048856,GO:0061458,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Exons6
EggNOG free text desc.transferase activity, transferring nitrogenous groups
EggNOG OGsCOG0436@1,KOG0257@2759
Ec32 ortholog descriptionAspartate Aminotransferase
Ec32 orthologEc-23_003500.1
EC2.6.1.1,2.6.1.78,2.6.1.79
Cds size663
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03019
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8613.20047.1prot_Ecto-sp13_S_contig8613.20047.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8613 217..4342 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464134.117561-CDS-Ecto-sp13_S_contig8613:216..3751681464134.117561-CDS-Ecto-sp13_S_contig8613:216..375Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8613 217..375 +
1681464134.130614-CDS-Ecto-sp13_S_contig8613:620..6981681464134.130614-CDS-Ecto-sp13_S_contig8613:620..698Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8613 621..698 +
1681464134.144728-CDS-Ecto-sp13_S_contig8613:1407..15331681464134.144728-CDS-Ecto-sp13_S_contig8613:1407..1533Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8613 1408..1533 +
1681464134.1598275-CDS-Ecto-sp13_S_contig8613:2243..24071681464134.1598275-CDS-Ecto-sp13_S_contig8613:2243..2407Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8613 2244..2407 +
1681464134.171183-CDS-Ecto-sp13_S_contig8613:3479..35851681464134.171183-CDS-Ecto-sp13_S_contig8613:3479..3585Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8613 3480..3585 +
1681464134.181262-CDS-Ecto-sp13_S_contig8613:4312..43421681464134.181262-CDS-Ecto-sp13_S_contig8613:4312..4342Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8613 4313..4342 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464134.1919835-UTR-Ecto-sp13_S_contig8613:4342..56081681464134.1919835-UTR-Ecto-sp13_S_contig8613:4342..5608Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8613 4343..5608 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8613.20047.1

>prot_Ecto-sp13_S_contig8613.20047.1 ID=prot_Ecto-sp13_S_contig8613.20047.1|Name=mRNA_Ecto-sp13_S_contig8613.20047.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=221bp
KERCEELAAVLSEEGGKGAGCWVLADEIYERITYDTPHVAFASLPGMLER
TMTVNGFSKSHAMTGYRLGYLAAPPIITKAVTTIQGQITSCASSISQAAG
LAALAVTDGEMQLSFDVMRKKRDFVLKRLSEMPDLVTAVPEGAFYVFPDV
SAHFGKSAPDGTTIGGATDLCLYLLRAHSVALVTGDGFGYPKGIRISYAA
SMEDIDEALGEFDKCISSLQ*
back to top

mRNA from alignment at Ecto-sp13_S_contig8613:217..5608+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8613.20047.1 ID=mRNA_Ecto-sp13_S_contig8613.20047.1|Name=mRNA_Ecto-sp13_S_contig8613.20047.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5392bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8613:217..5608+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGAACGCTGCGAAGAACTCGCTGCGGTGCTGTCGGAGGAAGGGGGAAA
GGGGGCGGGCTGCTGGGTGTTGGCGGACGAGATCTACGAACGCATCACGT
ATGACACGCCGCACGTGGCGTTCGCGTCACTGCCTGGGATGCTCGAGCGC
ACCATGACAGTACGTCCCGCCTGTTTTGTGGTTGCGTGGCTAAGGAGCGA
CTTTGTTGTTGTTCGTAGCGGGAGTGTTGTCTCTACGTGGTCGGTGGTGA
TGATGGCGGTGCAATGGCGTTAGTGCTGCAATGCCGAGTTAGGGACGATC
CGATGCTTGCAATGGTGAATGTTGGATCTTTGCTGAGCAGTTCTTGTTCT
AAGGTTGATACCGATTGTGTGACTGCGTTTCGTCGAAATGTGAACGATAC
GCAGGTTAATGGGTTCTCCAAGTCGCACGCGATGACGGGGTACCGGCTGG
GTTATCTCGCGGCACCCCCTATCATCACCAAGGTGAGGGGCTTCAAGCAT
TCGTGGGACCCCGCATCGGCTTGCGAGCTGCGGTGTGTGACAGTATGGGC
CATCACGACCTAAGGACGTGGTAGTTTCGTTGCTGATTGAGACTCTTGTT
GCGCTAAATGTGTACGTTTGGGATGCCTGGCTTTGAGTCCTCAGGCAAAC
GCTTCTGAACTCCAAAAAAAGGGCTGGTGTGTTGCTCACGCGCAAACGAA
GCGAAGCAAAATAATAAGCTTATCGTCGGCAACTGACTCCAGCTGTCAAT
TCCGTGACAAAAACCCCGTTGTGACATTCCTGACGAACGCGTGTCGGTCT
GTTTTGTTGCCGTACGGCCAGGCGGTTACCGCATTAGCCCTGACGAAATT
CATGCGTTGCGCTGTTTAGTCATTGCAGTACAGCCAGGCGCTTACCGCAG
CAGCCCTGGTAAACGCGTGTTGCGTTCTTTTGTCGCCGAACAGCGGGCAG
TTACCGCAACAGCCCTGCCGAACTTTCTAGTGTTTCGCGCTGTTTTTTTG
CCGTGCGGGCAGGTGGTTCCCCCAACAGCCATGTGTTGCGCTATTTGTTG
CGATACGGTAGTGCGTTTTCCGCAGCAGCACTGAAAAATTGTGTTTTGCG
GCCTTCGATTGCCGTACAGCCAGGCGGCTACCGCGACATGCCTGACAAAC
ATTTGTATGCCGCTGTTTTGTTGCCGTTGCCGCACGGCCAGGCGGTTACC
ACGATCCAAGGGCAGATCACGTCCTGCGCGAGCTCGATATCGCAGGCCGC
GGGTCTCGCCGCCCTCGCCGTTACCGACGGGGAGATGCAGCTCAGCTTCG
ACGTCATGCGCAAGAAGGTAATATTTCGACCTCATCGGGTGATGGAGTTG
CACCCGCGCTATGTTTCAAACGAGTTGTGGCCGGGGGCCGTTTTGCTGAA
TAGGTTCGACGTGATTTAGACTTAAGGGATATAGTCTAGACCCCGTCCCT
GTCGCCATTTTCTTAACGATGTCGTCTGAGGAGCGTTGGCGGTCTGCCCT
GAAATGCGAGCAAGGTGTAGTTTCTGAGCGTCCCCGCAGCCGTGACATAT
GTTCGGGAAATGGTGCAACATTCGGGGTATGTATACTTGTACACGGCTAT
CGGGAGTTTGGTGTCATGCCTGACTACGAGCGGCGACTGTACCACGACTC
CCCTGGAACCCTCCCGTAGTGCCTCGACAGGTTTAGTTGCAAGTCGCATC
CATTATTTTTTTAGTTTGCGTTAAAAACACTTTGCGGTAAGGTTGGTTGT
CTTCCGTTTGGTCAGAAGACTGAAAACCGTCCGCACCCATTGGACGAAAC
CCCTCGGAACCACCGCGAAGAGTTTTCTGGTCATGTCGAAGAAGGGTTTG
TCGGAAAAGAAAGGATAAAAAAAACTGGTCGAGCGCGTAGGATCGGTATG
TCGACAGCATCGCGACACACCGGCTGCCCCGCTACGCTCGGCGAAATCCC
CCTCTCAGCTGTTCAGCTTTGCGGATCTGTTGTTTCCGCGCTTTTCCTTA
CTCCGTGTAACCTCCTTGGCGTCGCAGCGAGACTTCGTACTCAAGAGGCT
GTCGGAGATGCCCGACCTCGTGACAGCGGTGCCCGAGGGAGCGTTCTACG
TTTTCCCCGACGTGTCCGCTCACTTCGGAAAGTCGGCACCGGACGGAACG
ACCATCGGAGGGGCCACGGACCTGTGCCTCTACTTGTTGCGGTGCGATGC
GCTCTGTGGCTGTGCTGTCTTCCAAGCAAACTGTGTGTGGGTGTAAATGA
TAAGCATCGACCGCGCTATTGCCGGCTTACCATTGAAAACACGTCAGTCT
TAGCGCGGTTCAAAACACACAATGCTTCTAATCGCCACGATCTGGGACCC
CGTGAGGGTGCGTGTGTGTTTGTTTTGTATGTTTTCTCGTAGAAATCATA
ACAAATCTCCTGCACATATTCGTGAGTGTTGGTTTCTGTTCTTTGGTTGC
ATGGTCCGTGCGAACGGGTTGGACAATGAGGAAGACGTGAATCCTACACG
GAGCGGGGCATAATCGTGCAACACGCTTATTCGCACGGGTGCGATGTCGA
TGTGTTCCATTTAATGGCGTCGGCCGCGCTGCAAGCTGCCCGTAGCGACT
TGTCCAGCCGTAGATTGCAGGACCAACACACCCGAAGCGTATTTGTAGCC
TGCGAGGTTCCCCCGCTGTGCGTGCGCGTATGTGTGGCATTGTTTTTTGG
GTCCCCCGACGTTTCGAGAAGAACTCACCGCGTGCTAACCAGCTCGGGGA
CCGGAAAAGCTTTCGTCCAAGAGCTCGCTTTGTGAACCCTGGGCCAAATA
AGGGCGTTTCTGTTTTCTCGCACTCATCAAGACTCAGTACCGTATCGCAA
AGATGGTTATCGCAAAAGGCTGCAGGATAAGGGCTTTACTTACGCAGTCA
ATTTTTAATTCCTTTTCTTGGCGTGACTGCTTAGGGTGTGAGAAAAACCT
CTTGATTTCTTACCACCAAGAAGACCCTGGTGACCCGTGCAACACCCGTC
CCACTTCCCTCCCATGTTTTTGCTTCGACGACTCTTATGCATCGCGATCG
CGGGCTGCCCGCGCGTGTGTTCCTCGTGTACGGTCGGTCGTCTACAGGAG
GTGGCGATCATTTGTGTGTCGGCCAAAACTCGGCGTCGTTTTTTTTTTTT
CGATTTTGCGCAAGTTGTTCCGTCTCTCGACAGTGTGACCTCAACCCTTT
CGTTTGTTGCTCGTGCTTCATTCCGGCCCGCCCGCCCGCCCGCCCGCCCG
CCCTGTTCCGCAGGGCGCACAGCGTGGCTTTGGTGACGGGGGACGGGTTC
GGCTACCCCAAGGGAATCCGGATTTCGTACGCGGCGTCCATGGAGGACAT
CGACGAAGCCCTAGGAGAGGTCAGAGCTAAAGAGTTACATGTGTGTCTGT
ATTTTTTTTGGATCATCGACCGCGCTAGTCGGCAAAACAATGCTGATGCG
TCAGTAAGGGCGCGGCTGAAAGTAAGAAATGGTCGAAAGGCCATGATCTG
AGACCCCGTGAGAGTTTGATCAACCGTCTGGCGTCAGTCTAGTGTACACA
CATTTCGGTGTGGTGCTTCTGACGTATCAGCCGGGGTCGCGCAGGAGGAA
AGGTCATACAGTAGGAGTTTATGTTTGTTGTGAAATGTGATTGTTGTTTT
TGCCCCACTTTTTTTCCTTTGGTACTTGCTACTGTATACGTACATGCGAT
TTCCCCCCTGTTTTCTGTTGTTTCTGTTTTCTGTTTTCTGTTTTCTGTTT
TCTGTTTTCGATTTTCTGTTTTTTTTTTTCTTCTCTGGGCGATTCTCTGA
AAGGTAGGCTCCGGAGCGGATTTTTATTTCGCACGTCCCATGTGCTCTGA
GGCACCACGGTTTCTCGTTCCGGGAGGAGGCGGAACGCGCAAGGTTTTGC
ACAGCAGACCATGTTTGTTTCCGGCTCGAGTACCTCAACGTGTTACTCTT
GACTACATCTATCCTCACGTTGACCCCTCGCCGATTTTTACGTGCCCACA
CAGCCGAAGTCCTACGCTAAATATATACCTGCTCAGAAGCGCGCACCTTG
ACTCCCCTACAATGCCCGATTTCCATCGCGCGTTGGCAACCGGCAGTTCG
ACAAGTGCATCTCTTCCCTCCAGTGAGGGAGCGAGATCTCCGGGGCAGGT
AGTCAGTCCAAGATGGTGTCAGTTGCGGCAGGGGGAGCTAGTGTTTGACA
GAAGACGGGAGGTGGGAAGAAACGGCTGTGCGGTTCGGCAAGAGGGTTGT
TTAATTTAGAGTTACGCGTCTATCTGTTGGGTGAAGCAAGCGTTGATGAG
GCGGGCGTTTGAAGCAGAAGCAGGTATGCAAATGGTGTCTGTTGGTGTGT
GGTTTCAAGGCACGGTTTAGAACTCGAGTGCGGCGCGGGCTCGGGATGAT
ACAGCACCCCAACGTGGCGTAAGCCTGAAACGTGAGCGATGGAGAAGTAC
TAAGCTCCTTGCTAGATTTATGTTTTTTCGCCACGGCCACGGCCCTTGGT
GCTTCATTCTTATGAGGACAGACACCCCGAGAGTTAAGCTCTCGGTCAGA
GACAAGGATTCTGTAGTCGTGGCTGTTTTTGCACTATCACTGGTGTAAGT
GCTGCCCTTGGGCGGGGGGGGTGTTCAGGGAACCAGGTTCTCCGAGGCCC
GGGGATGCTGATTCTTGATGTCGTGCCGACCCTGGAGTGTTGACAGCGGT
AGCGTATATTGTAGTATCAGGTCCGATTGGGACACGGACGTGCTGGGAGT
TTGTCGACTCTGATGCGTCCACGCCCCGCGGGATTGCCCACCGGGGATGG
AGGAAGATCACATACTCCTACCGTGGTTTGGCCTTGTCGTGTGTGCACCA
CGGCAAGTACCCATTTGCTTGTCACTATCTTGTCACTCATCTCCCAGTAT
TGGCAGATCTGTGGTTGGGACGTGGCTCGCTGGGACTGGCAGTGAGTCCC
TTGCGCCGAGGCGTGTATGGCCGTGGAGATGGAGAAGGAAGGCTACTGCA
CTGCATAAAGCTGAGAGATGTCATGGGGCGCTCTACACTGTGGCATGCGC
CAGAATGCGACGGATGATCATGCACGTTGTAGTACTGGATGCTAATGCGT
ATGCATGCGTGACGGCGCGGTGTGGTATGTCCATTCGGTTGGTGCGTTGC
CTATCTGCGGGTGATACCACCAGAGGGGAAACCTTGCGTCATCGTAAGAA
AAAAAAATTCAATGACCAAGGTGGCAATATAGAAAGAGAAGGTTTGTTTT
CTAATTTGTTTGAGATAAAATCGTTTTGTACATTTAACGTGTGCCCTCCC
CATGAGATTGAGTTTTGTTGCCGATGGTTGTCCTTCTGTGCTCACCGCTT
TCTTCGTGACAACAACGTCGTCGCAAGGATGCAACACGATAA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8613:217..5608+

>mRNA_Ecto-sp13_S_contig8613.20047.1 ID=mRNA_Ecto-sp13_S_contig8613.20047.1|Name=mRNA_Ecto-sp13_S_contig8613.20047.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=663bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8613:217..5608+ (Ectocarpus species13 EcNAP12_S_4_19m)
AAGGAACGCTGCGAAGAACTCGCTGCGGTGCTGTCGGAGGAAGGGGGAAA
GGGGGCGGGCTGCTGGGTGTTGGCGGACGAGATCTACGAACGCATCACGT
ATGACACGCCGCACGTGGCGTTCGCGTCACTGCCTGGGATGCTCGAGCGC
ACCATGACAGTTAATGGGTTCTCCAAGTCGCACGCGATGACGGGGTACCG
GCTGGGTTATCTCGCGGCACCCCCTATCATCACCAAGGCGGTTACCACGA
TCCAAGGGCAGATCACGTCCTGCGCGAGCTCGATATCGCAGGCCGCGGGT
CTCGCCGCCCTCGCCGTTACCGACGGGGAGATGCAGCTCAGCTTCGACGT
CATGCGCAAGAAGCGAGACTTCGTACTCAAGAGGCTGTCGGAGATGCCCG
ACCTCGTGACAGCGGTGCCCGAGGGAGCGTTCTACGTTTTCCCCGACGTG
TCCGCTCACTTCGGAAAGTCGGCACCGGACGGAACGACCATCGGAGGGGC
CACGGACCTGTGCCTCTACTTGTTGCGGGCGCACAGCGTGGCTTTGGTGA
CGGGGGACGGGTTCGGCTACCCCAAGGGAATCCGGATTTCGTACGCGGCG
TCCATGGAGGACATCGACGAAGCCCTAGGAGAGTTCGACAAGTGCATCTC
TTCCCTCCAGTGA
back to top