mRNA_Ecto-sp13_S_contig8611.20046.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8611.20046.1
Unique NamemRNA_Ecto-sp13_S_contig8611.20046.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8611.20046.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8611contigEcto-sp13_S_contig8611:879..4027 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size340
Hectar predicted targeting categoryother localisation
Exons3
Cds size339
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464134.0667381-CDS-Ecto-sp13_S_contig8611:878..9341681464134.0667381-CDS-Ecto-sp13_S_contig8611:878..934Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8611 879..934 +
1681464134.0766897-CDS-Ecto-sp13_S_contig8611:3581..37381681464134.0766897-CDS-Ecto-sp13_S_contig8611:3581..3738Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8611 3582..3738 +
1681464134.0858245-CDS-Ecto-sp13_S_contig8611:3900..40261681464134.0858245-CDS-Ecto-sp13_S_contig8611:3900..4026Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8611 3901..4026 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8611.20046.1prot_Ecto-sp13_S_contig8611.20046.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8611 879..4026 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8611.20046.1

>prot_Ecto-sp13_S_contig8611.20046.1 ID=prot_Ecto-sp13_S_contig8611.20046.1|Name=mRNA_Ecto-sp13_S_contig8611.20046.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=113bp
HPLTLSLLNCQRDPNLEGSISDDGSKSNGSGSGGFGSCRCALPGEPCRWS
RSPAVSHFSAILLVERLPREHVRGHRRGPVRLQRWRREGGSGPSAGHDRS
GDSRRGRRRRNLP
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mRNA from alignment at Ecto-sp13_S_contig8611:879..4027+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8611.20046.1 ID=mRNA_Ecto-sp13_S_contig8611.20046.1|Name=mRNA_Ecto-sp13_S_contig8611.20046.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3149bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8611:879..4027+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACCCACTCACACTTTCCCTCCTCAATTGTCAGCGCGATCCGAACTTGGA
AGGAAGGTGAGTAGGGACTGTGTGCCTTGGTAACCTACTGTGGCGAACCA
CGCAGGCTTCAGTGAAAATATCCATTGTTGCGTTGTCCGTTGTCGAGTGA
GAGGTCACCGGTCGAGTGTTCTCCTCTCACAAGGAAAGGCTACATGTAGC
TCTGCTTTGCTTGGTGCCATCAATCTGAACGATCTTTGATGTACGAAGCC
GCTTTCTTTGTGCTCCGTAGATGAATGCATCCCGCAGAGGTTGAAAACGT
TTTGCGAGCACCTACCTCCGGCACCAACAACGTGTGGTGTTCATGTCTAC
ATCTATCCCCAAAGTCGCACCTGCGGCAGGAAAAGCTCCGCATTTGTTCG
GAATAAAACAGCAGTCGCCACACCAACAGTCCAAAATCTTTCCGCTTAAC
AGAGTTTGTTGATTTTTGGTTGATTTCGCGACGTTGTTGATGTGAGGGCG
TTTCACTGCGTGTCAAATCGCGCAACGGCACTCTCTTTCTCCCAGTGCTA
TGCTTTCTGCGGCTTTTCCTTCCTTCCATCCTGTCCCTTCCTCGCTCCCG
TCTGTCTCGGCAGCGTGTGTGTGTGTGGTGATTTCTGCTCTTCTCCCTCT
TTCTGGATCTTTCTGTCGCTCTCCCGTCCTTCCTCTCTCTCTGTACTCTC
TCTGCTCCATTGTGTTTGAATGTGTTTAATGTTTCTGTCCACTCTGTCTG
TCGGCTGTCGAGCTTTCGATCTCTCTCTCCCTCCCTTCCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCGTTCTCTCTCT
CTCTCTTTCTGTTCTCGATGGTAGCACAGCTGTACGGGATCTCGTTTACT
CTGTTGCGCGGGACATCAATTCAAAATTCGGGCCGTTGAGCTGTTGAGTT
GCATACAGCGTATGCAGTGCGGTGACTTTCAGGGGTTGGTTGAGGAGGTA
ACTACTACCCAAGAAGTGGTCTAGCCACCAACTATGTCAAGTGCATATAG
ACATACATGCTTCACGGAAGATGACGGCGGACGACGGTGGAGACAAAACG
ATTACACCAGAGACGAACTTGCGCGCTCGTCTCGCTCCAAACCGGAAGTC
TGCTGTCGCTGTTCACGTATGACTGATTTGCACGTGTCCCACTGGTGGTG
TAGAGAACAATCTGCCGTCTCAAACCTTCCTTTCCGCAAGCCCCCACGAA
GACGAGGCCTTGACGATGCAGTCGAACACGCGCCCGATGAAAAACAGCAG
AGATCGGGGGGTGAAGATGACACCTCCTGAACTTGTTGTGCTAGGCTGAC
CACCTTATCTGCCCTACAGATGCCAGTCCTCTCCGCTCACCTAGATCGGA
TCCGTTTTTTTGAAGGGATCCCACGCGCGAAAGGGCGCTAGATGGTTGGG
TTGCAACAGTGTGGAGTTGGATGCGTGCCTACCAGCGAGAAGCAGGTCGT
GTAGGTATACCGCTACCGCGCAGAGGGTGTTGAGCAGGAACAGAGTATAT
GAATCTCTTCACCAAGGAGCCGTGCGATGGATGCAAAATGGAGCTCAATA
AGATAAGATTAGCTGTTTCTTCCTTGCGCGAACCCGCCAAGAGACCAATC
ATGCGCGCATCTTGCGCACAGCAACTCTGGACTCTCGAGTCGCACCACCC
TCCTCGTTACTCGTACCAAGTGGTGCATCAGCACTTTCACGAATTGGGCG
CATTTCTGACGGCGAAGAGTCAGGGGCGTTCACACATCACTTTTCGAGCC
GTTGCTTTGTCGTCCTCGAGATGGGCACCATTTAGAGATTTGCACAGTCG
AAAGCGGGTTCGAGATGAAAGTCCCGTGACTGCTGAAAGTGTTGATCGTC
GTACATTAAATTCGTAGTGAGGCGTTGCCTTTTCCTCCCCGTACTCTAGT
GGGGTCTACTTGCAACCTTTCGTTCTTGTGCGTGACAGCGAGTTTGGTGG
CCATCTTAACTGTGCGCCGAGGTACGCTCTCACAGTAGCATTCAAGTTCG
TTGCAGTGACAGGTGCGCACCCATCAACTTTGAACGTTGATGAAAATGTA
GAACTATTGATCCGTTGGGTTGCGTGGGATTTCATTCGGGAATCCCTTAC
TCGATGATTCTTCGCACAACTCCGTCGGTAGTTTGCGGTCGTTTGTTTCA
TCGCAGTAGCTCACTCGAACTCACATTGGCTCTGGCGACCGCCACCTGTC
GGTCCTCAAAATTTCAAAGTGTTGGTTGCTGTCGTACATGAACGTTTATT
GTTCTTATGGTAACGGCAAAAATGTGTTGCGTTGAGAAGAGACGACATCG
AACGACCATACGCGAGCTCCTTTGATGAGCAATTTGGGGGTGGATGTCGT
TTACGCCAACCAAGGAAGCACAACCTCTCTGCACGTGGAGAGTTGTGCCG
GAACAAGACAGGGGTTGTGAAACAACGGAGTGAACCCCACAGAGAGAGAA
AGACGCACAGATAATCGGGACTTTTGTGCAAACCGCGTAGAGTGCCTATA
TGGAACTGCGGCGAGAACGACTTTTGGCCACATATGCATGTGCATCAGCG
TTCGCCGCACCACGATCGACCCGATCCATTCGCCGCACCACGATCGACCC
GATCCTTCTCCAACCCCTAACGTTCGAATGGATACTTTGTTCCACACCGG
CAGTATCAGCGATGATGGCAGCAAGTCGAATGGGAGCGGGTCTGGTGGCT
TCGGCAGCTGTCGCTGTGCTCTTCCGGGCGAACCATGTCGATGGTCACGC
TCACCAGCAGTTTCCCATTTCTCGGCAATACTCCTGGTCGAGAGACTTCC
AAGAGAACACGTGGGTGAAAATTCTCGCATAGACTCGTCCCTGGTGCTTG
TTTTTGCTTTGTGGAGTAAGCGTTGGGCGAGTCACACGAGGTTGTACATA
CGTATGGTGCTTGTGCGTTCTTCTCGCTGTGTCCCCATCCTCGTGGTGAA
TCAAACTTGCACAATCAAACAGGTTCGAGGACATCGAAGGGGCCCCGTAC
GCCTACAACGCTGGAGGCGTGAAGGAGGTTCAGGCCCGAGCGCAGGCCAT
GACCGATCAGGCGACTCTCGACGCGGTCGGCGGCGGCGAAATCTACCCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8611:879..4027+

>mRNA_Ecto-sp13_S_contig8611.20046.1 ID=mRNA_Ecto-sp13_S_contig8611.20046.1|Name=mRNA_Ecto-sp13_S_contig8611.20046.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=339bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8611:879..4027+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACCCACTCACACTTTCCCTCCTCAATTGTCAGCGCGATCCGAACTTGGA
AGGAAGTATCAGCGATGATGGCAGCAAGTCGAATGGGAGCGGGTCTGGTG
GCTTCGGCAGCTGTCGCTGTGCTCTTCCGGGCGAACCATGTCGATGGTCA
CGCTCACCAGCAGTTTCCCATTTCTCGGCAATACTCCTGGTCGAGAGACT
TCCAAGAGAACACGTTCGAGGACATCGAAGGGGCCCCGTACGCCTACAAC
GCTGGAGGCGTGAAGGAGGTTCAGGCCCGAGCGCAGGCCATGACCGATCA
GGCGACTCTCGACGCGGTCGGCGGCGGCGAAATCTACCC
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