mRNA_Ecto-sp13_S_contig86107.20045.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig86107.20045.1
Unique NamemRNA_Ecto-sp13_S_contig86107.20045.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig86107.20045.1 vs. uniprot
Match: D7FXN8_ECTSI (MYND-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXN8_ECTSI)

HSP 1 Score: 104 bits (260), Expect = 5.800e-25
Identity = 46/49 (93.88%), Postives = 47/49 (95.92%), Query Frame = 1
Query:    1 RMTVASGSAGCSNCGKDGSLRPCSRCRQVRYCSRDCQRQHWKDHKRDCG 147
            RMTVASGSAGCSNCGK GSLRPCSRC QVRYCSRDCQRQHW+DHKRDCG
Sbjct: 1337 RMTVASGSAGCSNCGKVGSLRPCSRCHQVRYCSRDCQRQHWRDHKRDCG 1385          
BLAST of mRNA_Ecto-sp13_S_contig86107.20045.1 vs. uniprot
Match: A0A6H5JFV6_9PHAE (MYND-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JFV6_9PHAE)

HSP 1 Score: 62.8 bits (151), Expect = 3.340e-10
Identity = 27/46 (58.70%), Postives = 30/46 (65.22%), Query Frame = 1
Query:    7 TVASGSAGCSNCGKDGSLRPCSRCRQVRYCSRDCQRQHWKDHKRDC 144
            T A GS  C+ CGK G    CSRCR V YCS++CQRQ WK HK  C
Sbjct: 1093 TAADGSRKCAKCGKSGKPLQCSRCRNVSYCSKECQRQDWKSHKPSC 1138          
BLAST of mRNA_Ecto-sp13_S_contig86107.20045.1 vs. uniprot
Match: A0A8H3H5H6_9AGAM (Hypothetical protein n=1 Tax=Rhizoctonia solani TaxID=456999 RepID=A0A8H3H5H6_9AGAM)

HSP 1 Score: 60.5 bits (145), Expect = 2.180e-9
Identity = 25/40 (62.50%), Postives = 30/40 (75.00%), Query Frame = 1
Query:   28 GCSNCGKDGS-LRPCSRCRQVRYCSRDCQRQHWKDHKRDC 144
            GC  C K G+ L  C RC++ RYCS +CQR+HWKDHKRDC
Sbjct: 1117 GCWACAKSGAPLSACGRCQRARYCSTECQREHWKDHKRDC 1156          
BLAST of mRNA_Ecto-sp13_S_contig86107.20045.1 vs. uniprot
Match: A0A8H5C6D7_9AGAR (MYND-type domain-containing protein n=1 Tax=Tulosesus angulatus TaxID=980116 RepID=A0A8H5C6D7_9AGAR)

HSP 1 Score: 59.7 bits (143), Expect = 2.540e-9
Identity = 24/40 (60.00%), Postives = 31/40 (77.50%), Query Frame = 1
Query:   28 GCSNCGKDGS-LRPCSRCRQVRYCSRDCQRQHWKDHKRDC 144
            GC+ CG++GS LR C RC +V+YC  DCQ+ HWK HK+DC
Sbjct:  197 GCAGCGREGSGLRRCGRCGKVKYCGADCQKGHWKIHKKDC 236          
BLAST of mRNA_Ecto-sp13_S_contig86107.20045.1 vs. uniprot
Match: D8LNQ8_ECTSI (MYND-type domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNQ8_ECTSI)

HSP 1 Score: 59.3 bits (142), Expect = 5.580e-9
Identity = 27/51 (52.94%), Postives = 33/51 (64.71%), Query Frame = 1
Query:    1 RMTVAS--GSAGCSNCGKDGSLRPCSRCRQVRYCSRDCQRQHWKDHKRDCG 147
            +M  AS  G   C+ CG  G    C+RCR+V YCS++CQRQHWK HK  CG
Sbjct: 1322 KMAAASVAGPPKCAKCGIGGKSLQCTRCRKVSYCSKECQRQHWKIHKAACG 1372          
BLAST of mRNA_Ecto-sp13_S_contig86107.20045.1 vs. uniprot
Match: A0A2P6VG49_9CHLO (Ankyrin n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VG49_9CHLO)

HSP 1 Score: 58.5 bits (140), Expect = 6.640e-9
Identity = 24/41 (58.54%), Postives = 28/41 (68.29%), Query Frame = 1
Query:   25 AGCSNCGKDGSLRPCSRCRQVRYCSRDCQRQHWKDHKRDCG 147
            A C NCGK G+ R C+ C    YCSR+CQR HWK+HK  CG
Sbjct:   36 AACFNCGKAGTTRRCTGCLAALYCSRNCQRAHWKEHKGRCG 76          
BLAST of mRNA_Ecto-sp13_S_contig86107.20045.1 vs. uniprot
Match: UPI0020080B4F (uncharacterized protein n=1 Tax=Epithele typhae TaxID=378194 RepID=UPI0020080B4F)

HSP 1 Score: 58.9 bits (141), Expect = 7.590e-9
Identity = 26/39 (66.67%), Postives = 31/39 (79.49%), Query Frame = 1
Query:   28 GCSNCGKDGSLRPCSRCRQVRYCSRDCQRQHWKDHKRDC 144
            GC+ CGK+G+ R CSRC+ VRYCS DCQR  WK+HK DC
Sbjct:  266 GCAVCGKEGASR-CSRCQIVRYCSSDCQRADWKNHKPDC 303          
BLAST of mRNA_Ecto-sp13_S_contig86107.20045.1 vs. uniprot
Match: A0A2P6VFU6_9CHLO (Ankyrin n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VFU6_9CHLO)

HSP 1 Score: 58.5 bits (140), Expect = 1.040e-8
Identity = 24/41 (58.54%), Postives = 28/41 (68.29%), Query Frame = 1
Query:   25 AGCSNCGKDGSLRPCSRCRQVRYCSRDCQRQHWKDHKRDCG 147
            A C NCGK G+ R C+ C    YCSR+CQR HWK+HK  CG
Sbjct:  751 AACFNCGKAGATRRCTGCLAALYCSRNCQRAHWKEHKGRCG 791          
BLAST of mRNA_Ecto-sp13_S_contig86107.20045.1 vs. uniprot
Match: A0A7S2UNG7_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UNG7_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.390e-8
Identity = 26/39 (66.67%), Postives = 29/39 (74.36%), Query Frame = 1
Query:   31 CSNCGKDGSL-RPCSRCRQVRYCSRDCQRQHWKDHKRDC 144
            C+ CG D ++ R CSRCR V YC RDCQR HWKDHKR C
Sbjct:   18 CAACGIDTTMIRGCSRCRTVGYCGRDCQRGHWKDHKRVC 56          
BLAST of mRNA_Ecto-sp13_S_contig86107.20045.1 vs. uniprot
Match: A0A8K0TVR9_9AGAM (Ankyrin repeat-containing domain protein n=1 Tax=Phlebopus sp. FC_14 TaxID=2615122 RepID=A0A8K0TVR9_9AGAM)

HSP 1 Score: 58.2 bits (139), Expect = 1.410e-8
Identity = 24/39 (61.54%), Postives = 28/39 (71.79%), Query Frame = 1
Query:   31 CSNCG-KDGSLRPCSRCRQVRYCSRDCQRQHWKDHKRDC 144
            C NC  K G L+ C+RC  VRYCS++CQR HWK HK DC
Sbjct:  221 CENCKTKSGGLKQCARCHVVRYCSKECQRAHWKTHKADC 259          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig86107.20045.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FXN8_ECTSI5.800e-2593.88MYND-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A6H5JFV6_9PHAE3.340e-1058.70MYND-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A8H3H5H6_9AGAM2.180e-962.50Hypothetical protein n=1 Tax=Rhizoctonia solani Ta... [more]
A0A8H5C6D7_9AGAR2.540e-960.00MYND-type domain-containing protein n=1 Tax=Tulose... [more]
D8LNQ8_ECTSI5.580e-952.94MYND-type domain-containing protein n=2 Tax=Ectoca... [more]
A0A2P6VG49_9CHLO6.640e-958.54Ankyrin n=1 Tax=Micractinium conductrix TaxID=5540... [more]
UPI0020080B4F7.590e-966.67uncharacterized protein n=1 Tax=Epithele typhae Ta... [more]
A0A2P6VFU6_9CHLO1.040e-858.54Ankyrin n=1 Tax=Micractinium conductrix TaxID=5540... [more]
A0A7S2UNG7_9STRA1.390e-866.67Hypothetical protein n=1 Tax=Attheya septentrional... [more]
A0A8K0TVR9_9AGAM1.410e-861.54Ankyrin repeat-containing domain protein n=1 Tax=P... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig86107contigEcto-sp13_S_contig86107:291..440 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size150
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Cds size147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464134.03034-CDS-Ecto-sp13_S_contig86107:290..4371681464134.03034-CDS-Ecto-sp13_S_contig86107:290..437Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig86107 291..437 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464134.040691-UTR-Ecto-sp13_S_contig86107:437..4401681464134.040691-UTR-Ecto-sp13_S_contig86107:437..440Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig86107 438..440 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig86107.20045.1prot_Ecto-sp13_S_contig86107.20045.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig86107 291..437 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig86107.20045.1

>prot_Ecto-sp13_S_contig86107.20045.1 ID=prot_Ecto-sp13_S_contig86107.20045.1|Name=mRNA_Ecto-sp13_S_contig86107.20045.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=49bp
MTVASGSAGCSNCGKDGSLRPCSRCRQVRYCSRDCQRQHWKDHKRDCG*
back to top

mRNA from alignment at Ecto-sp13_S_contig86107:291..440-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig86107.20045.1 ID=mRNA_Ecto-sp13_S_contig86107.20045.1|Name=mRNA_Ecto-sp13_S_contig86107.20045.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=150bp|location=Sequence derived from alignment at Ecto-sp13_S_contig86107:291..440- (Ectocarpus species13 EcNAP12_S_4_19m)
AGGATGACTGTTGCTTCTGGTTCAGCGGGGTGCTCCAATTGCGGAAAGGA TGGCTCTCTGAGGCCGTGCTCTCGCTGCCGCCAGGTGCGCTACTGCTCGA GGGACTGCCAGCGCCAGCACTGGAAGGATCATAAGCGTGATTGTGGGTAG
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig86107:291..440-

>mRNA_Ecto-sp13_S_contig86107.20045.1 ID=mRNA_Ecto-sp13_S_contig86107.20045.1|Name=mRNA_Ecto-sp13_S_contig86107.20045.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=147bp|location=Sequence derived from alignment at Ecto-sp13_S_contig86107:291..440- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACTGTTGCTTCTGGTTCAGCGGGGTGCTCCAATTGCGGAAAGGATGG
CTCTCTGAGGCCGTGCTCTCGCTGCCGCCAGGTGCGCTACTGCTCGAGGG
ACTGCCAGCGCCAGCACTGGAAGGATCATAAGCGTGATTGTGGGTAG
back to top