mRNA_Ecto-sp13_S_contig861.20040.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig861.20040.1
Unique NamemRNA_Ecto-sp13_S_contig861.20040.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig861.20040.1 vs. uniprot
Match: D8LQX2_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQX2_ECTSI)

HSP 1 Score: 636 bits (1641), Expect = 1.540e-214
Identity = 365/566 (64.49%), Postives = 378/566 (66.78%), Query Frame = 1 
Query:    1 MAYVGQRVEVFWPPEGEDTEGNWYCGELDGYNDAAGYHVTYDDGDEEVLGEEIDGRDDIHLLPLRSPPDGGDNRIFPEEGAHQRDGKPSVPEEEGENRRIEQRGKATSKLDSQTPIGSGLAAMSHREIERPASPPVSGGSNTSPRSNVSMERSRHRSDGNSADDNGFEGGEFGKSSERKATKPTGRDGVGNRSGSAWSSNDDDDGNGTTDYDSFDFGSEDEEAGIFGPASCRSSSXXXXXXXXXXXXXXXXXHGGNCGHEDDDEQTQEGQGRRGWRLAASEGGRGGDDSSVEKFSLSGNSSDWTPLRGTDLVGASRRSSPSWRRRDKRNRERLSEAAGDEEEVFSFHNEGSRVTTAANALDKTTEACISALRNAMLASAGSGVIAPGENHEVLPCRTSAWRTGDGRTDGRGAVVGGSDNPEDGLKTLERFVHDTAMLQGVVEGVERGREGGGTAALRADGETVGEEGVFVKISFVEGGLASTTNAMFRCKTLLHTTGSSAPATCSAGYGGGGWPDGEFQCETFHGGRLGELANAAVLFSVHRRWCGKGGATSRGLEREGFLGQASL 1698
            MA+VGQRVEVFWPPEG+DTEGNWYCGELDGY+DAAGYHVTYDDGDEEVLGE+IDGRDDIHLLPL SPPDGGDNR  PE  AH+RD KP VPEEEGEN RI QRGKATS+ DS TP GSGLAAMS+REI RPASPP   GSNTSPRSN+SMERSRHRS GN ADDNGF+ GEFGK+ ER ATKPTGRDG GNRSGSAWSSNDDDD  G  DYDSFDFGSEDEE                                                      LA+  G                      P  GT L G              R R R                                                SGV  PGENHE LPCRTS WRTGDGRTDGRGAVVGGSDNPEDGLK LE FVHDTAMLQG VEGVERGR GGGTAALRADGET GEEGVFVKISF+EGGLASTTNAMFRCKTLLHTTGSSAPATCSAG    GWPDGEFQCETFHGGRLGELANAAVLFSVHRRWCGK GATSRGL+REGFLGQ  L
Sbjct:    1 MAHVGQRVEVFWPPEGDDTEGNWYCGELDGYDDAAGYHVTYDDGDEEVLGEQIDGRDDIHLLPLWSPPDGGDNRNPPEGVAHRRDDKPGVPEEEGENGRIGQRGKATSEPDSPTPTGSGLAAMSYREIGRPASPPDCDGSNTSPRSNLSMERSRHRSAGNVADDNGFQSGEFGKTRERTATKPTGRDGAGNRSGSAWSSNDDDDDKGAIDYDSFDFGSEDEE------------------------------------------------------LASPRG----------------------PEPGTALRGC-------------RGRRR------------------------------------------------SGVGTPGENHESLPCRTSPWRTGDGRTDGRGAVVGGSDNPEDGLKALEGFVHDTAMLQGAVEGVERGRGGGGTAALRADGETAGEEGVFVKISFIEGGLASTTNAMFRCKTLLHTTGSSAPATCSAGXXXXGWPDGEFQCETFHGGRLGELANAAVLFSVHRRWCGKRGATSRGLDREGFLGQVVL 429
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig861.20040.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LQX2_ECTSI1.540e-21464.49Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig861contigEcto-sp13_S_contig861:5457..9910 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size1728
Hectar predicted targeting categoryother localisation
Exons7
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-07_001910.2
Cds size1728
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig861.20040.1prot_Ecto-sp13_S_contig861.20040.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig861 5457..9910 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464133.7016184-CDS-Ecto-sp13_S_contig861:5456..56211681464133.7016184-CDS-Ecto-sp13_S_contig861:5456..5621Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig861 5457..5621 -
1681464133.7137473-CDS-Ecto-sp13_S_contig861:5893..60431681464133.7137473-CDS-Ecto-sp13_S_contig861:5893..6043Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig861 5894..6043 -
1681464133.7232738-CDS-Ecto-sp13_S_contig861:6837..72271681464133.7232738-CDS-Ecto-sp13_S_contig861:6837..7227Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig861 6838..7227 -
1681464133.73476-CDS-Ecto-sp13_S_contig861:7851..84971681464133.73476-CDS-Ecto-sp13_S_contig861:7851..8497Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig861 7852..8497 -
1681464133.7476258-CDS-Ecto-sp13_S_contig861:8967..91101681464133.7476258-CDS-Ecto-sp13_S_contig861:8967..9110Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig861 8968..9110 -
1681464133.7587955-CDS-Ecto-sp13_S_contig861:9352..95181681464133.7587955-CDS-Ecto-sp13_S_contig861:9352..9518Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig861 9353..9518 -
1681464133.7701337-CDS-Ecto-sp13_S_contig861:9842..99101681464133.7701337-CDS-Ecto-sp13_S_contig861:9842..9910Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig861 9843..9910 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig861.20040.1

>prot_Ecto-sp13_S_contig861.20040.1 ID=prot_Ecto-sp13_S_contig861.20040.1|Name=mRNA_Ecto-sp13_S_contig861.20040.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=576bp
MAYVGQRVEVFWPPEGEDTEGNWYCGELDGYNDAAGYHVTYDDGDEEVLG
EEIDGRDDIHLLPLRSPPDGGDNRIFPEEGAHQRDGKPSVPEEEGENRRI
EQRGKATSKLDSQTPIGSGLAAMSHREIERPASPPVSGGSNTSPRSNVSM
ERSRHRSDGNSADDNGFEGGEFGKSSERKATKPTGRDGVGNRSGSAWSSN
DDDDGNGTTDYDSFDFGSEDEEAGIFGPASCRSSSSGGSSSDRDSFYGGS
KDHGGNCGHEDDDEQTQEGQGRRGWRLAASEGGRGGDDSSVEKFSLSGNS
SDWTPLRGTDLVGASRRSSPSWRRRDKRNRERLSEAAGDEEEVFSFHNEG
SRVTTAANALDKTTEACISALRNAMLASAGSGVIAPGENHEVLPCRTSAW
RTGDGRTDGRGAVVGGSDNPEDGLKTLERFVHDTAMLQGVVEGVERGREG
GGTAALRADGETVGEEGVFVKISFVEGGLASTTNAMFRCKTLLHTTGSSA
PATCSAGYGGGGWPDGEFQCETFHGGRLGELANAAVLFSVHRRWCGKGGA
TSRGLEREGFLGQASLTSHTQQSRS*
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mRNA from alignment at Ecto-sp13_S_contig861:5457..9910-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig861.20040.1 ID=mRNA_Ecto-sp13_S_contig861.20040.1|Name=mRNA_Ecto-sp13_S_contig861.20040.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4454bp|location=Sequence derived from alignment at Ecto-sp13_S_contig861:5457..9910- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGTACGTGGGGCAGCGCGTGGAGGTGTTCTGGCCGCCGGAGGGAGA
GGACACAGAAGGAAATTGGTTAGTGCAGCTGAACGCTTTGAGTCGTTCGC
GACGAGCGCTCGACGTGACCACGACTTATGGACTCCCGACTGCGTTGACG
ACTCTGCCGGCCCCTTATAGGGCAAATGGTCGTGTACCACAGCGAACACA
TGACCGGATCAAATGCCAATGTTTTGTAGGTCCCTTCGTCGATCAAAAGC
ATGGCAGAACCCTCACGACGAAAACAATTCCGATGATCGATGAGTACGTT
CTGCAGTACCAAATGTTGGATGTCTCCACACCCAAAATTACACAATTGTA
TACTCTAAGCTCCGTTTGTTCATCCACTCACAACTATTGCAGGTATTGTG
GTGAGCTGGATGGGTATAACGACGCGGCGGGATACCATGTAACCTACGAC
GATGGGGACGAGGAAGTGCTCGGGGAAGAGATTGACGGCAGGGACGATAT
TCATCTTCTACCGCTGCGATCCCCGCCTGATGGAGGCGACAACCGCATCT
TCCCTGAGGTGCGTGTACGGTTCGTCGTTGCAGTCTGCTGCAGCGTTCTG
TTGTGGGGCCTTTTCTCGATATTTCGAGGACGAAATCGAAGTCGGTGCTC
TGCTGAACACTACAAGCATCGTCGTACGTTCCAACGGGAATGACGAAACC
TAAACTCGTGACCTTGTCCGGCGAGAACCAGCCGCACCACCGCCAGGAGG
GTACTGACAAGGTTGTTGATCCCGGGTTTATTGTCGTTGCTGTTGCTCAG
GAGGGCGCTCACCAGCGGGATGGTAAACCCAGTGTGCCGGAAGAGGAGGG
AGAAAACAGGAGGATAGAACAGAGAGGCAAAGCTACCAGCAAACTGGACA
GCCAAACGCCAATCGGCAGCGGCTTGGCCGCAATGTCACACAGGTGTGGT
TCTGTACGTTGCGCGTGTTCTCCGTTGCGTGTCAGCTTTGTTGCGCTAAA
TGAAAAATGCGTGCAGTCTTGTGTAGAATACGACGTGCGAAGGGAAAAAC
CTGGAAGGTGCGAAAAGGTCAAGACACGACAACACCCTATCACGAGAAGG
GAACACAGCTTAGTCTTTCGTTTGTTTCTTGACAGGAAACGAGCCACCGA
AAAGTAGTTGCTCACTACTTCTAAGCACCCGCGTGGGGGTCACGCGGAGA
CAAGGCGGACGCGGAAACAAGGCGAAGTTGTCCTTAAGATCGTACCAAAT
GGAACCTTCACACTCTTACTCCTTACCTCGAGGAGTGAATGGCTTGCGTA
TCACTATTTCGTTGTGTGTGTCTGTACGTTTCGAACATCGATGTCAATCC
ACGTCTCACGACCCTTTCCTCGAGGAAACAGCGCTTACCCTTCCCGGATT
AACTGCACACCAGGGAGATCGAGCGGCCTGCCTCACCTCCAGTAAGCGGC
GGCAGCAACACGAGCCCACGTTCCAACGTGAGCATGGAACGTTCCAGACA
CCGTTCCGACGGGAACAGCGCCGACGACAACGGCTTCGAAGGCGGAGAGT
TTGGAAAATCGAGTGAAAGGAAAGCCACAAAACCAACCGGTCGCGACGGC
GTGGGAAACAGGAGTGGCTCGGCCTGGAGTTCGAACGACGACGATGACGG
GAATGGCACTACCGACTACGACAGCTTCGACTTCGGGAGCGAAGACGAGG
AGGCCGGGATTTTCGGGCCCGCGTCCTGCCGCAGCAGCAGCAGCGGCGGC
AGCAGCAGCGACCGCGACAGCTTCTACGGTGGAAGCAAAGATCACGGTGG
CAACTGCGGACACGAAGACGACGACGAGCAAACCCAGGAAGGGCAAGGAC
GCAGGGGCTGGAGACTAGCCGCGAGCGAAGGAGGCAGAGGAGGAGATGAT
AGCTCCGTGGAGAAATTTTCACTCTCAGGAAACAGCTCGGACTGGACGCC
GCTAAGGGGGACGGATCTCGTCGGCGCCTCTCGCCGCTCGTCGCCGAGTT
GGCGTCGCCGCGACAAGCGGAACCGGGAACGGCTCTCAGAGGCTGCAGGG
GATGAAGAAGTAAGTTGTCGTGAACTGGTCTGGTCTGATGTGTGTTATAC
GATAAAATGTGACTCGGGGTGGTTTGACAGCGGTGCAGTGTACGTAACAC
GGAGAGGTAAGTGTAGGTCGTGGGGATACATTTTCTCCGGTAATAGTTGT
GTCACTTTCTGAGCTTTTTCTGAATTCGCACACCTAGATCACTAAAGTTT
CTGGCTGGGCTCACGGTTGAAGCAGTCGGTTAAGAACGCAGTGCAACAAG
CGAGGATTAAACCTTTGGTCAAAGTCTTTTGGCAATTGCAATGGCCTTTT
GTCCGCCCCCGTGGTATTCATTCCGCACTCAAGGGCTAAGACCAAGCTCG
GTGTCCTTTGTGATTGAGTGCACACACAGCCAGGCACTCCCCAGCTTCTT
TTCGTTATCTAAGTGTCACCCCGCATTTAACACACAACTCTGAACAGAGC
ACCCGTCGCATGACATTGATCGGTCGATTTGGGTCTGCTGTGTGGCTGAG
GAAAAGCTATGATTCATCCGCCTGTGTACTTCAATCCCCGAAATGAAAAG
CCGTACATCTAGATGGATGAAGACACGGAACCCTACCCTGACAGTCGCCT
AACAACCCTGACGATCGGTGGTTGCACGCGCAGGAAGTCTTTTCGTTTCA
CAACGAAGGATCGCGCGTCACCACAGCCGCCAATGCGCTAGACAAGACGA
CCGAGGCGTGTATTTCCGCGCTTCGGAACGCCATGCTTGCCTCCGCAGGA
TCAGGCGTCATCGCACCCGGAGAAAACCACGAGGTACTCCCTTGTCGCAC
CTCGGCGTGGCGGACGGGAGACGGGCGGACCGACGGCCGTGGCGCTGTGG
TCGGCGGCAGTGACAACCCGGAAGACGGCCTTAAAACTTTAGAACGGTTC
GTCCACGATACGGCAATGTTGCAGGGGGTCGTCGAAGGGGTGGAACGCGG
CAGAGAAGGGGGCGGAACAGCAGCGCTCCGCGCGGATGGCGAGACCGTGG
GGGAGGAGGGAGTCTTCGTGAAGGTCGGCGACCCGCGTAGCAGTTGGAGT
CCGGTAGTGTAGCGTCCAGAGGAATGTCGTCGTCGTTGCTGCTGCCTTCC
ATGATTTCACAAGAAGAACTCATCCGCTGCTGGTGTCGGGTGGATTTTTT
CGCTTCAAAAGTGCCTGTAGTCGGACGTGCAATGTGTCGCGAGGGGGCGG
ATAGCCGGGGACCACAGATCGGAGCCGGTGGTTCGATGAGTTCGTCCGCA
GAGAGCGTCATTTGTATTGACCTCTCGTTGTGGTTGTCGTGAATCTGAGC
TTGAGGGGCTAGACGTGTGTTTTCGTTCGGTGGTAGCGAGCCACCCTCCT
CTGTGTAAGCGTCGAATCTGCCGGAAACTGAGAGGACATCGCACGGCAAA
AACTTGCATCCCCGTGTTGCATGTCGAACACAGGGGTCGACAAACGAGCT
GCGATAGGACCGGCCTGGATAGTTTGGTCATTGGCAATATGTCGCTACCC
AGTCTAAAAGCTTGAGGATTTAATCTGATTCTTATAGCTCGTCGAATCCT
TCGTACATCAAGCTGGGCTACAAACCGTAAGGTCTTGTCCGAAGATGCAG
ACGGTTTGACACATTATTGCATCTTCGCTGTAGACGAAGTACGACTGCCG
CCTCGAACATGATTGCGCCGCTCTCGCAGACCAACGTGCTTCACTCTCAA
CTCTCGTACAGACCAATACCACAGCCGACACAGGCAATCACGATGCACAT
GTTCTGACTCCGCGCTGACATCTAATCCTCCTGTTTACTGCATGTGGTGC
CGATCTTGATCTCCCAGATAAGCTTTGTCGAGGGGGGATTAGCGTCGACG
ACCAACGCCATGTTCCGTTGCAAGACCCTCCTACACACAACGGGATCTTC
TGCACCAGCGACGTGTAGCGCCGGCTATGGCGGCGGGGGTTGGCCTGACG
GAGAGTTTCAATGCGAGGTGCACGTTTCCATCCAATCGCTCATGAGCTTC
ATTCTCTCTTCTTCTGGTGTTTTCTACCATGAATGGGACAACGTCGTCCG
CGCTAATCCTATTTCTCGTTGTTTTTGTCGTTGCCACGTTAGGTACTTCG
TCATGGCAGCAACGAACGGCATTCGCTATCGATGAGGCTGCTATTGTCGT
CCACACGCCATATTCTCTGTGAACACCCTCCCCATCCCCCACAAACATCG
TCGAACCGTTCGCGGCGTTCTGGCGAACCTTTGATGTAGACCTTCCATGG
TGGACGGCTGGGCGAGTTGGCAAACGCAGCAGTGCTATTTTCCGTGCACC
GGAGGTGGTGTGGCAAAGGAGGCGCCACATCGCGGGGCTTGGAGCGCGAA
GGCTTCCTGGGGCAGGCGAGCCTCACTAGCCACACACAACAGTCACGTAG
CTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig861:5457..9910-

>mRNA_Ecto-sp13_S_contig861.20040.1 ID=mRNA_Ecto-sp13_S_contig861.20040.1|Name=mRNA_Ecto-sp13_S_contig861.20040.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1728bp|location=Sequence derived from alignment at Ecto-sp13_S_contig861:5457..9910- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGTACGTGGGGCAGCGCGTGGAGGTGTTCTGGCCGCCGGAGGGAGA
GGACACAGAAGGAAATTGGTATTGTGGTGAGCTGGATGGGTATAACGACG
CGGCGGGATACCATGTAACCTACGACGATGGGGACGAGGAAGTGCTCGGG
GAAGAGATTGACGGCAGGGACGATATTCATCTTCTACCGCTGCGATCCCC
GCCTGATGGAGGCGACAACCGCATCTTCCCTGAGGAGGGCGCTCACCAGC
GGGATGGTAAACCCAGTGTGCCGGAAGAGGAGGGAGAAAACAGGAGGATA
GAACAGAGAGGCAAAGCTACCAGCAAACTGGACAGCCAAACGCCAATCGG
CAGCGGCTTGGCCGCAATGTCACACAGGGAGATCGAGCGGCCTGCCTCAC
CTCCAGTAAGCGGCGGCAGCAACACGAGCCCACGTTCCAACGTGAGCATG
GAACGTTCCAGACACCGTTCCGACGGGAACAGCGCCGACGACAACGGCTT
CGAAGGCGGAGAGTTTGGAAAATCGAGTGAAAGGAAAGCCACAAAACCAA
CCGGTCGCGACGGCGTGGGAAACAGGAGTGGCTCGGCCTGGAGTTCGAAC
GACGACGATGACGGGAATGGCACTACCGACTACGACAGCTTCGACTTCGG
GAGCGAAGACGAGGAGGCCGGGATTTTCGGGCCCGCGTCCTGCCGCAGCA
GCAGCAGCGGCGGCAGCAGCAGCGACCGCGACAGCTTCTACGGTGGAAGC
AAAGATCACGGTGGCAACTGCGGACACGAAGACGACGACGAGCAAACCCA
GGAAGGGCAAGGACGCAGGGGCTGGAGACTAGCCGCGAGCGAAGGAGGCA
GAGGAGGAGATGATAGCTCCGTGGAGAAATTTTCACTCTCAGGAAACAGC
TCGGACTGGACGCCGCTAAGGGGGACGGATCTCGTCGGCGCCTCTCGCCG
CTCGTCGCCGAGTTGGCGTCGCCGCGACAAGCGGAACCGGGAACGGCTCT
CAGAGGCTGCAGGGGATGAAGAAGAAGTCTTTTCGTTTCACAACGAAGGA
TCGCGCGTCACCACAGCCGCCAATGCGCTAGACAAGACGACCGAGGCGTG
TATTTCCGCGCTTCGGAACGCCATGCTTGCCTCCGCAGGATCAGGCGTCA
TCGCACCCGGAGAAAACCACGAGGTACTCCCTTGTCGCACCTCGGCGTGG
CGGACGGGAGACGGGCGGACCGACGGCCGTGGCGCTGTGGTCGGCGGCAG
TGACAACCCGGAAGACGGCCTTAAAACTTTAGAACGGTTCGTCCACGATA
CGGCAATGTTGCAGGGGGTCGTCGAAGGGGTGGAACGCGGCAGAGAAGGG
GGCGGAACAGCAGCGCTCCGCGCGGATGGCGAGACCGTGGGGGAGGAGGG
AGTCTTCGTGAAGATAAGCTTTGTCGAGGGGGGATTAGCGTCGACGACCA
ACGCCATGTTCCGTTGCAAGACCCTCCTACACACAACGGGATCTTCTGCA
CCAGCGACGTGTAGCGCCGGCTATGGCGGCGGGGGTTGGCCTGACGGAGA
GTTTCAATGCGAGACCTTCCATGGTGGACGGCTGGGCGAGTTGGCAAACG
CAGCAGTGCTATTTTCCGTGCACCGGAGGTGGTGTGGCAAAGGAGGCGCC
ACATCGCGGGGCTTGGAGCGCGAAGGCTTCCTGGGGCAGGCGAGCCTCAC
TAGCCACACACAACAGTCACGTAGCTGA
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