mRNA_Ecto-sp13_S_contig86.20015.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig86.20015.1
Unique NamemRNA_Ecto-sp13_S_contig86.20015.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig86.20015.1 vs. uniprot
Match: D7FQU1_ECTSI (Intraflagellar transport particle protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FQU1_ECTSI)

HSP 1 Score: 895 bits (2312), Expect = 0.000e+0
Identity = 453/492 (92.07%), Postives = 464/492 (94.31%), Query Frame = 2 
Query:   80 PDQRPRAGVLTC*HRIHEA-TMVMYLPCSPGLPDF*KGTTEDDXXXXESKAADEAEITGQAAPDKLRAELQRRRKEAEHYVFTAAKLIAPVMDKKDWESGYDWVVETIKLDHEYLASKMEVEKALHYLKTKEFDKAIEHLKAFEKKDQHLKAMAATNLAFIYFLEGEFKSADSYADMAIRHNRYNAKALVNKGNCLFMSKEYERAKEIFLEAIGVEVDCVEAIFNLGLVNIHLGLPGDSLQAFEKLHTIIPNNTEVIYHIANLYEAHMENLPQASKWFNILLARVPTDPGILSRMGHIANKEDDDSQAYFYHKESYRHYPVNLDVISWLGVWYVKSELYEKAIHYFETAAQIQPTEVKWRLMVTSCFRRMGNYQKALELYEQIHTEYPENLECLRYLVAICRDHDRPFQHYQHKLARLDRATPGRGPSTATTEVANPGEPAPNPGREKRWSGGDRRGSEQRNAGGSDSGSGSPANAPNARVVEREGVGADRG 1552
            PD +    ++ C + + +  +M         +P   +GTTEDD    ESKAADEAEITGQAAPDKLRAELQRR+KEAEHYVFTAAKLIAPVMDKKDWESGYDWVVETIKLDHEYLASKMEVEKALHYLKTKEFDKAIEHLKAFEKKDQHLKAMAATNLAFIYFLEGEFKSADSYADMAIRHNRYNAKALVNKGNCLFMSKEYERAKEIFLEAIGVEVDCVEAI+NLGLVNIHLGLPGDSLQAFEKLHTIIPNNTEVIYHIANLYEAHMENLPQASKWFNILLARVPTDPGILSRMGHIANKEDDDSQAYFYHKESYRHYPVNLDVISWLGVWYVKSELYEKAIHYFETAAQIQPTEVKWRLMVTSCFRRMGNYQKALELYEQIHTEYPENLECLRYLVAICRDHDRPFQHYQHKLARLDRATPGRGPSTATTEVANPGEPAPNPGREKRWSGGDRRGSEQRN GGSDSGSGSPANAPNARVVEREGVGADRG
Sbjct:  202 PDHQTGFNLVLCYYALEDGLSMKKAFQRLAAIPV--QGTTEDDNDEDESKAADEAEITGQAAPDKLRAELQRRKKEAEHYVFTAAKLIAPVMDKKDWESGYDWVVETIKLDHEYLASKMEVEKALHYLKTKEFDKAIEHLKAFEKKDQHLKAMAATNLAFIYFLEGEFKSADSYADMAIRHNRYNAKALVNKGNCLFMSKEYERAKEIFLEAIGVEVDCVEAIYNLGLVNIHLGLPGDSLQAFEKLHTIIPNNTEVIYHIANLYEAHMENLPQASKWFNILLARVPTDPGILSRMGHIANKEDDDSQAYFYHKESYRHYPVNLDVISWLGVWYVKSELYEKAIHYFETAAQIQPTEVKWRLMVTSCFRRMGNYQKALELYEQIHTEYPENLECLRYLVAICRDHDRPFQHYQHKLARLDRATPGRGPSTATTEVANPGEPAPNPGREKRWSGGDRRGSEQRNTGGSDSGSGSPANAPNARVVEREGVGADRG 691
[Close]
BLAST of mRNA_Ecto-sp13_S_contig86.20015.1 vs. uniprot
Match: A0A835Z9Y6_9STRA (Intraflagellar transport particle protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z9Y6_9STRA)

HSP 1 Score: 555 bits (1429), Expect = 7.380e-188
Identity = 271/425 (63.76%), Postives = 343/425 (80.71%), Query Frame = 2 
Query:   80 PDQRPRAGVLTC*HRIHEATMV------MYLPCSPGLPDF*KGTTEDDXXXXESKAADEAEITGQAAPDKLRAELQRRRKEAEHYVFTAAKLIAPVMDKKDWESGYDWVVETIKLDHEYLASKMEVEKALHYLKTKEFDKAIEHLKAFEKKDQHLKAMAATNLAFIYFLEGEFKSADSYADMAIRHNRYNAKALVNKGNCLFMSKEYERAKEIFLEAIGVEVDCVEAIFNLGLVNIHLGLPGDSLQAFEKLHTIIPNNTEVIYHIANLYEAHMENLPQASKWFNILLARVPTDPGILSRMGHIANKEDDDSQAYFYHKESYRHYPVNLDVISWLGVWYVKSELYEKAIHYFETAAQIQPTEVKWRLMVTSCFRRMGNYQKALELYEQIHTEYPENLECLRYLVAICRDHDRPFQHYQHKLARLDR 1336
            PD      +L C + + +A  +      +     PGL +      +DD    E KAAD+AE TG AA D LR EL+++RKEA+ Y+ TAAKLIAP +D +D ++GY WV++ +K + E LAS MEVE+ALH+L+ ++F++AIE LKAFE KD  L+AMAATNL+FIYFLEG+F+SADSYAD+A+R +RYNAKALVNKGNCLF+++E+ RAKE++LEAIGVEVDCVEAIFNLGL NI LGL GD+LQAFEKLHT++P + EV+YHIANL+E   ++L  A+KWFNILLARVPTDPG+L+RMG IAN+++D+SQAY YH ESYRHYP NLDVISWLGVWYVKSELYE+A+ +F  A+QIQP EVKWRLMVTSC+RRMG +Q+AL+LYE+IH E+P+NLECLRYLVA+C+D  RP++ YQ KLARLDR
Sbjct:  211 PDVLTGLNLLLCHYALEDAAQMKRAFQRLVAIAIPGLAE------DDDEDDGEGKAADDAEATGLAAVDALRQELRQKRKEADSYIMTAAKLIAPALDARDCDAGYAWVIDALKAEREALASAMEVERALHHLRARQFERAIEGLKAFEWKDAPLRAMAATNLSFIYFLEGDFRSADSYADLAVRTDRYNAKALVNKGNCLFVAREHARAKEVYLEAIGVEVDCVEAIFNLGLANIQLGLVGDALQAFEKLHTVLPTSAEVVYHIANLHERGRDDLAAAAKWFNILLARVPTDPGVLARMGQIANRQEDESQAYHYHLESYRHYPANLDVISWLGVWYVKSELYERAVAFFARASQIQPGEVKWRLMVTSCYRRMGAFQRALDLYERIHAEHPDNLECLRYLVAMCKDLGRPYEQYQAKLARLDR 629
[Close]
BLAST of mRNA_Ecto-sp13_S_contig86.20015.1 vs. uniprot
Match: A0A024UCQ4_9STRA (Uncharacterized protein n=5 Tax=Aphanomyces TaxID=100860 RepID=A0A024UCQ4_9STRA)

HSP 1 Score: 517 bits (1332), Expect = 1.900e-171
Identity = 268/450 (59.56%), Postives = 338/450 (75.11%), Query Frame = 2 
Query:   80 PDQRPRAGVLTC*HRIHEAT-MVMYLPCSPGLPDF*KGTTEDDXXXXESKAADEAEITGQAA-----PDKLRAELQRRRKEAEHYVFTAAKLIAPVMDKKDWESGYDWVVETIKLDHEYLASKMEVEKALHYLKTKEFDKAIEHLKAFEKKDQHLKAMAATNLAFIYFLEGEFKSADSYADMAIRHNRYNAKALVNKGNCLFMSKEYERAKEIFLEAIGVEVDCVEAIFNLGLVNIHLGLPGDSLQAFEKLHTIIPNNTEVIYHIANLYEAHMENLPQASKWFNILL-----ARVPTDPGILSRMGHIANKEDDDSQAYFYHKESYRHYPVNLDVISWLGVWYVKSELYEKAIHYFETAAQIQPTEVKWRLMVTSCFRRMGNYQKALELYEQIHTEYPENLECLRYLVAICRDHDRPFQHYQHKLARLDRATPGRGPSTATTEVANPGEP 1396
            PD +    ++ C + I E   M        G+P   +G ++DD    ESK  D    TG  A      D L+AE++ R+K+A  ++ TAAKL AP +DKKDW +GY+WV++ +K+DHE +AS+ME+ KALH+LK K+FDKAIE LKAFEKKD  LKAMAATNL+F+YF+EG++  AD +A +A+RH RYNAKALVNKGNCL++  E ERAKE++LEAIGVE DC+EAIFNLGLVNI +G+  ++LQAFEKLH+I+P NTEV+Y IANL++  M N  QA+KWFNILL     A+   DPG+L+RMG I NK+DD++QA+ YH ESYRH+PVNLDVISWLGVWYVKSELYEKAI +FE AAQIQPTEVKWRLMVTSC RRMG YQKAL LYEQIH +YP+NLECLRYLVAIC+D  + ++H+QH LA+L+R    +  S      A+ G P
Sbjct:  310 PDFQSGFNLIICYYAIGEHDKMRRGFTNLIGIPM--EGVSDDDSQDDESKDGDIP--TGVPAVVHLKKDGLKAEIRARQKKATEFILTAAKLCAPALDKKDWLAGYNWVIDAMKVDHEPIASEMEICKALHFLKNKDFDKAIEVLKAFEKKDPALKAMAATNLSFLYFVEGDYAQADKFASLAVRHQRYNAKALVNKGNCLYIKNECERAKELYLEAIGVEADCIEAIFNLGLVNIKIGVLNEALQAFEKLHSIVPTNTEVLYQIANLHDM-MGNYRQAAKWFNILLSCFGSAKNIADPGVLARMGQIFNKDDDETQAFHYHLESYRHFPVNLDVISWLGVWYVKSELYEKAIQFFERAAQIQPTEVKWRLMVTSCHRRMGAYQKALVLYEQIHVDYPDNLECLRYLVAICKDLGQKYEHHQHALAKLERENAAKINSQLNATAASNGSP 754
[Close]
BLAST of mRNA_Ecto-sp13_S_contig86.20015.1 vs. uniprot
Match: A0A397DF83_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DF83_9STRA)

HSP 1 Score: 505 bits (1300), Expect = 2.060e-171
Identity = 243/360 (67.50%), Postives = 303/360 (84.17%), Query Frame = 2 
Query:  272 LRAELQRRRKEAEHYVFTAAKLIAPVMDKKDWESGYDWVVETIKLDHEYLASKMEVEKALHYLKTKEFDKAIEHLKAFEKKDQHLKAMAATNLAFIYFLEGEFKSADSYADMAIRHNRYNAKALVNKGNCLFMSKEYERAKEIFLEAIGVEVDCVEAIFNLGLVNIHLGLPGDSLQAFEKLHTIIPNNTEVIYHIANLYEAHMENLPQASKWFNILL-----ARVPTDPGILSRMGHIANKEDDDSQAYFYHKESYRHYPVNLDVISWLGVWYVKSELYEKAIHYFETAAQIQPTEVKWRLMVTSCFRRMGNYQKALELYEQIHTEYPENLECLRYLVAICRDHDRPFQHYQHKLARLDR 1336
            L+AE++ R+K+A  ++ TAAKL AP +DKKDW +GY+WV++ +K DHE +AS+ME+ KALH+LK K+FDKAIE LKAFEKKD  LKAMAATNL+F+YF+EG++  AD +A +A+RH RYNAKALVNKGNCL++  E ERAKE++LEAIGVE DC+EAIFNLGLVNI +G+  ++LQAFEKLH+I+P NTEV+Y IANL++  M N  QA+KWFNILL     A+   DPG+L+RMG I NK+DD++QA+ +H ESYRH+PVNLDVISWLGVWYVKSELYEKAI +FE AAQIQPTEVKWRLMVTSC RRMG YQKAL LYEQIH +YP+NLECLRYLVAIC+D  + ++H+Q  LA+L+R
Sbjct:   71 LKAEIRERQKKASEFILTAAKLCAPALDKKDWLAGYNWVIDAMKADHEPIASEMEICKALHFLKNKDFDKAIEVLKAFEKKDPALKAMAATNLSFLYFVEGDYTQADKFASLAVRHQRYNAKALVNKGNCLYVKNECERAKELYLEAIGVEADCIEAIFNLGLVNIKIGVLNEALQAFEKLHSIVPTNTEVLYQIANLHDM-MGNYRQAAKWFNILLSCFGSAKNIADPGVLARMGQIFNKDDDETQAFHFHLESYRHFPVNLDVISWLGVWYVKSELYEKAIQFFERAAQIQPTEVKWRLMVTSCHRRMGAYQKALVLYEQIHVDYPDNLECLRYLVAICKDLGQKYEHHQQALAKLER 429
[Close]
BLAST of mRNA_Ecto-sp13_S_contig86.20015.1 vs. uniprot
Match: A0A418B6Z1_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418B6Z1_9STRA)

HSP 1 Score: 508 bits (1307), Expect = 3.690e-170
Identity = 265/435 (60.92%), Postives = 332/435 (76.32%), Query Frame = 2 
Query:   80 PDQRPRAGVLTC*HRIHE-ATMVMYLPCSPGLPDF*KGTTEDDXXXXESKAADEAEITGQAA-----PDKLRAELQRRRKEAEHYVFTAAKLIAPVMDKKDWESGYDWVVETIKLDHEYLASKMEVEKALHYLKTKEFDKAIEHLKAFEKKDQHLKAMAATNLAFIYFLEGEFKSADSYADMAIRHNRYNAKALVNKGNCLFMSKEYERAKEIFLEAIGVEVDCVEAIFNLGLVNIHLGLPGDSLQAFEKLHTIIPNNTEVIYHIANLYEAHMENLPQASKWFNILL-----ARVPTDPGILSRMGHIANKEDDDSQAYFYHKESYRHYPVNLDVISWLGVWYVKSELYEKAIHYFETAAQIQPTEVKWRLMVTSCFRRMGNYQKALELYEQIHTEYPENLECLRYLVAICRDHDRPFQHYQHKLARLDRATPGR 1351
            PD +    ++ C + I E   M        G+P   +G  +DD    ESK  D    TG  A      D L+AE++ R+K+A  ++ TAAKL AP +DKKDW +GY+WV++ +K+DHE +AS+ME+ KALH+LK K+FDKAIE LKAFEKKD  LKAMAATNL+F+YF+EG++  AD +A +A+RH RYNAKALVNKGNCL++  E ERAKE++LEAIGVE DC+EAIFNLGLVNI +G+  ++LQAFEKLH+I+P NTEV+Y IANL++  M N  QA+K FNILL     A+   DPG+L+RMG I NK+DD++QA+ YH ESYRH+PVNLDVISWLGVWYVKSELYEKAI +FE AAQIQPTEVKWRLMVTSC RRMG YQKAL LYEQIH +YP+NLECLRYLVAIC+D  + ++H+QH LA+L+R T  R
Sbjct:  241 PDFQSGFNLIICYYAIGEHEKMRRGFTNLIGIPM--EGVGDDDSQDDESKDGDIP--TGVPAVVHLKKDGLKAEIRARQKKATEFILTAAKLCAPALDKKDWLAGYNWVIDAMKVDHEPIASEMEICKALHFLKNKDFDKAIEVLKAFEKKDPALKAMAATNLSFLYFVEGDYAQADKFASLAVRHQRYNAKALVNKGNCLYIKNECERAKELYLEAIGVEADCIEAIFNLGLVNIKIGVLNEALQAFEKLHSIVPTNTEVLYQIANLHDM-MGNYRQAAK-FNILLSCFGSAKNIADPGVLARMGQIFNKDDDETQAFHYHLESYRHFPVNLDVISWLGVWYVKSELYEKAIQFFERAAQIQPTEVKWRLMVTSCHRRMGAYQKALVLYEQIHVDYPDNLECLRYLVAICKDLGQKYEHHQHALAKLERGTSPR 669
[Close]
BLAST of mRNA_Ecto-sp13_S_contig86.20015.1 vs. uniprot
Match: A0A1V9YJV6_9STRA (Intraflagellar Transport Protein 88 (Fragment) n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YJV6_9STRA)

HSP 1 Score: 491 bits (1265), Expect = 9.260e-167
Identity = 237/345 (68.70%), Postives = 292/345 (84.64%), Query Frame = 2 
Query:  317 VFTAAKLIAPVMDKKDWESGYDWVVETIKLDHEYLASKMEVEKALHYLKTKEFDKAIEHLKAFEKKDQHLKAMAATNLAFIYFLEGEFKSADSYADMAIRHNRYNAKALVNKGNCLFMSKEYERAKEIFLEAIGVEVDCVEAIFNLGLVNIHLGLPGDSLQAFEKLHTIIPNNTEVIYHIANLYEAHMENLPQASKWFNILLA-----RVPTDPGILSRMGHIANKEDDDSQAYFYHKESYRHYPVNLDVISWLGVWYVKSELYEKAIHYFETAAQIQPTEVKWRLMVTSCFRRMGNYQKALELYEQIHTEYPENLECLRYLVAICRDHDRPFQHYQHKLARLDR 1336
            + TAAKL AP +DKKDW SGY+WV++ +K DHE +AS+ME+ KALH+LK+KEFDKAIE LKAFEKKD  LKAMAATNL+F+YF+EG++  AD +A +A+RH RYNAKALVNKGNCL++  E ERAKE++LEAIGVE DC+EAIFNLGLVNI +G+  ++LQAFEKLH+I+P+NTEVI+ IANL++  M N  QA+KWFNILL+     +   DPG+L+R+G I NK+DD++QA+ YH ESYRH+PVNLDVISWLGVWYVKSELYEKAI +FE A+QIQP EVKWRLMVTSC RRMG YQKAL LYEQIH +YPENLECLRYLVAIC+D  + ++H+Q  LA+L+R
Sbjct:    1 ILTAAKLCAPALDKKDWISGYNWVIDAMKQDHEPIASEMEICKALHFLKSKEFDKAIEVLKAFEKKDPALKAMAATNLSFLYFVEGDYAQADKFASLAVRHQRYNAKALVNKGNCLYVKNECERAKELYLEAIGVEADCIEAIFNLGLVNIKIGVLNEALQAFEKLHSIVPSNTEVIFQIANLHDM-MGNYRQAAKWFNILLSCFGSSKNVADPGVLARLGQIFNKDDDETQAFHYHLESYRHFPVNLDVISWLGVWYVKSELYEKAIQFFERASQIQPQEVKWRLMVTSCHRRMGAYQKALILYEQIHHDYPENLECLRYLVAICKDLGQKYEHHQQALAKLER 344
[Close]
BLAST of mRNA_Ecto-sp13_S_contig86.20015.1 vs. uniprot
Match: A0A6G0XD88_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XD88_9STRA)

HSP 1 Score: 504 bits (1299), Expect = 2.420e-166
Identity = 256/429 (59.67%), Postives = 327/429 (76.22%), Query Frame = 2 
Query:   80 PDQRPRAGVLTC*HRIHE-ATMVMYLPCSPGLPDF*KGTTEDDXXXXESKAADEAEITGQAA----PDKLRAELQRRRKEAEHYVFTAAKLIAPVMDKKDWESGYDWVVETIKLDHEYLASKMEVEKALHYLKTKEFDKAIEHLKAFEKKDQHLKAMAATNLAFIYFLEGEFKSADSYADMAIRHNRYNAKALVNKGNCLFMSKEYERAKEIFLEAIGVEVDCVEAIFNLGLVNIHLGLPGDSLQAFEKLHTIIPNNTEVIYHIANLYEAHMENLPQASKWFNILLA-----RVPTDPGILSRMGHIANKEDDDSQAYFYHKESYRHYPVNLDVISWLGVWYVKSELYEKAIHYFETAAQIQPTEVKWRLMVTSCFRRMGNYQKALELYEQIHTEYPENLECLRYLVAICRDHDRPFQHYQHKLARLDR 1336
            PD +    ++ C + I E   M        G+P    G  +D+    +SK  DE+ +   +      D L+AE++ R+K A  ++ TAAKL AP +DKKDW +GY+WV++ +K DHE +AS+ME+ KALH+LK K+F+KAIE LKAFEKKD  LKAMAATNL+F+YF+EG+F  AD +A +A+RH RYNAKALVNKGNCLF+  E ERAKE++LEAIGVE DC+EAIFNLGLVNI +G+  ++LQAFEKLH+I+P+NTEV+Y I NL++  M N   A+KWFNILL+     +   DPG+L+RMG I NK+DD++QA+ YH ESYRH+PVNLDVISWLGVWYVKSELYEKAI +FE A+QIQPTEVKWRLMVTSC RRMG YQKAL LYEQIH +YP+NLECLRYLVAIC+D  + ++H+Q  LA+L+R
Sbjct:  300 PDFQSGFNLIICYYAIGEHEKMRRGFTNLIGIPMEGVGEEDDE----DSKEGDESAVASASVVHLKKDGLKAEIRARQKRATDFILTAAKLCAPALDKKDWLAGYNWVIDAMKQDHESIASEMEICKALHFLKNKDFEKAIEVLKAFEKKDPALKAMAATNLSFLYFVEGDFAQADKFASLAVRHQRYNAKALVNKGNCLFVKNECERAKELYLEAIGVEADCIEAIFNLGLVNIKIGVLNEALQAFEKLHSIVPSNTEVLYQIGNLHDM-MGNYRHAAKWFNILLSCFGSSKNVADPGVLARMGQIFNKDDDETQAFHYHLESYRHFPVNLDVISWLGVWYVKSELYEKAIQFFERASQIQPTEVKWRLMVTSCHRRMGAYQKALILYEQIHHDYPDNLECLRYLVAICKDLGQKYEHHQQALAKLER 723
[Close]
BLAST of mRNA_Ecto-sp13_S_contig86.20015.1 vs. uniprot
Match: A0A485KY66_9STRA (Aste57867_13477 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485KY66_9STRA)

HSP 1 Score: 501 bits (1290), Expect = 1.050e-164
Identity = 249/396 (62.88%), Postives = 316/396 (79.80%), Query Frame = 2 
Query:  266 DKLRAELQRRRKEAEHYVFTAAKLIAPVMDKKDWESGYDWVVETIKLDHEYLASKMEVEKALHYLKTKEFDKAIEHLKAFEKKDQHLKAMAATNLAFIYFLEGEFKSADSYADMAIRHNRYNAKALVNKGNCLFMSKEYERAKEIFLEAIGVEVDCVEAIFNLGLVNIHLGLPGDSLQAFEKLHTIIPNNTEVIYHIANLYEAHMENLPQASKWFNILL-----ARVPTDPGILSRMGHIANKEDDDSQAYFYHKESYRHYPVNLDVISWLGVWYVKSELYEKAIHYFETAAQIQPTEVKWRLMVTSCFRRMGNYQKALELYEQIHTEYPENLECLRYLVAICRDHDRPFQHYQHKLARLDRATPGRGPSTATTEVANPGEPAPNPGREKRWSGGD 1438
            D L+AE++ R+K+A  ++ TAAKL AP +DKKDW +GY+WV++ +K DHE +AS+ME+ KALH+L+ K+F+KAIE LKAFEKKD  LKAMAATNL+F+YF+EG++  AD +A +A+RH RYNA+ALVNKGNCLF+  E ERAKE++LEAIGVE DC+EAIFNLGLVNI +G+  ++LQAFEKLH+I+P NTEV+Y IANL++  M N  QA+KWFNILL     A+   DPG+L+RMG I NK+DD++QA+ YH ESYRH+PVNLDVISWLGVWYVKSELYEKAI +FE A+QIQP EVKWRLMVTSC RRMG YQKAL LYEQIH +YP+NLECLRYLVAIC+D  + ++H+Q  LA+L+R    +    A T  + P +  P P ++   SG D
Sbjct:  406 DGLKAEIRARQKKATDFILTAAKLCAPALDKKDWLAGYNWVIDAMKQDHEPIASEMEICKALHFLRNKDFEKAIEVLKAFEKKDPALKAMAATNLSFLYFVEGDYAQADKFASLAVRHQRYNARALVNKGNCLFVKNECERAKELYLEAIGVEADCIEAIFNLGLVNIKIGVLNEALQAFEKLHSIVPTNTEVLYQIANLHDM-MGNYRQAAKWFNILLSCFGSAKNVADPGVLARMGQIFNKDDDETQAFHYHLESYRHFPVNLDVISWLGVWYVKSELYEKAIQFFERASQIQPNEVKWRLMVTSCHRRMGAYQKALILYEQIHHDYPDNLECLRYLVAICKDLGQKYEHHQQALAKLERENAAK--INAQTNASMPTQSNPPPQQQMSRSGSD 798
[Close]
BLAST of mRNA_Ecto-sp13_S_contig86.20015.1 vs. uniprot
Match: A0A067CHZ2_SAPPC (Uncharacterized protein n=3 Tax=Saprolegnia TaxID=4769 RepID=A0A067CHZ2_SAPPC)

HSP 1 Score: 495 bits (1274), Expect = 9.520e-163
Identity = 241/362 (66.57%), Postives = 299/362 (82.60%), Query Frame = 2 
Query:  266 DKLRAELQRRRKEAEHYVFTAAKLIAPVMDKKDWESGYDWVVETIKLDHEYLASKMEVEKALHYLKTKEFDKAIEHLKAFEKKDQHLKAMAATNLAFIYFLEGEFKSADSYADMAIRHNRYNAKALVNKGNCLFMSKEYERAKEIFLEAIGVEVDCVEAIFNLGLVNIHLGLPGDSLQAFEKLHTIIPNNTEVIYHIANLYEAHMENLPQASKWFNILLA-----RVPTDPGILSRMGHIANKEDDDSQAYFYHKESYRHYPVNLDVISWLGVWYVKSELYEKAIHYFETAAQIQPTEVKWRLMVTSCFRRMGNYQKALELYEQIHTEYPENLECLRYLVAICRDHDRPFQHYQHKLARLDR 1336
            D L+AE++ R+K+A  Y+  AAKL AP +DKKDW +GY+WV++ +K DHE +AS+ME+ KALH+LK K+FDKAIE LKAFEKKD  LKAMAATNL+F+YF+EG++  AD +A +A+RH RYNAKALVNKGNCL++  E ERAKE++LEAIGVE DC+EAIFNLGLVNI +G+  ++LQAFEKLH+I+  NTEVIY IANL +  M N  QA KWFNILL+     +   DPG+L+R+G I NK+DD++QA+ +H ESYRH+PVNLDVISWLGVWYVKSELYEKAI +FE A+QIQP+EVKWRLMVTSC RRMG YQKAL LYEQIH +YPENLECLRYLVAIC+D  + + H+Q  LA+L+R
Sbjct:  376 DGLKAEIRARQKKATEYILIAAKLCAPALDKKDWLAGYNWVIDAMKQDHEPIASEMEICKALHFLKNKDFDKAIEVLKAFEKKDPALKAMAATNLSFLYFVEGDYNQADKFASLAVRHQRYNAKALVNKGNCLYVKNECERAKELYLEAIGVEADCIEAIFNLGLVNIKIGVLNEALQAFEKLHSIVSTNTEVIYQIANLNDM-MGNYRQAVKWFNILLSCFGSSKCVADPGVLARLGQIHNKDDDETQAFHFHLESYRHFPVNLDVISWLGVWYVKSELYEKAIQFFERASQIQPSEVKWRLMVTSCHRRMGAYQKALILYEQIHHDYPENLECLRYLVAICKDLGQKYDHHQQALAKLER 736
[Close]
BLAST of mRNA_Ecto-sp13_S_contig86.20015.1 vs. uniprot
Match: A0A8J2S308_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2S308_9STRA)

HSP 1 Score: 487 bits (1254), Expect = 7.490e-161
Identity = 239/365 (65.48%), Postives = 301/365 (82.47%), Query Frame = 2 
Query:  257 AAPDKLRAELQRRRKEAEHYVFTAAKLIAPVM--DKKDWE-SGYDWVVETIKLDHEYLASKMEVEKALHYLKTKEFDKAIEHLKAFEKKDQHLKAMAATNLAFIYFLEGEFKSADSYADMAIRHNRYNAKALVNKGNCLFMSKEYERAKEIFLEAIGVEVDCVEAIFNLGLVNIHLGLPGDSLQAFEKLHTIIPNNTEVIYHIANLYEAHMENLPQASKWFNILLARVPTDPGILSRMGHIANKEDDDSQAYFYHKESYRHYPVNLDVISWLGVWYVKSELYEKAIHYFETAAQIQPTEVKWRLMVTSCFRRMGNYQKALELYEQIHTEYPENLECLRYLVAICRDHDRPFQHYQHKLARLDRAT 1342
            AA D LR EL +R KEA  Y+ TAA+LIAP +  D  D + +GY + +E++K DHE ++S+ME+E+AL Y++ KEF KAIE LKAFEK+DQHLKAMAATNL+FIYFLEG+ +SAD YAD+A  H+RYNA+ALVNKGNCL +  +Y+ AK+ +LEAIGVE DCVEAI++LGLVN+ + L  ++LQAFEKLH ++PNN EVIY IA L+EA  + +  A KW+NIL+ RVP+DPG+L RMG + N+ DD++QA+ +H ESYRHYPV+LDVISWLGVWYVKSE+YEKAIH+FE AAQIQP EVKWRLMVTSC+RRMGNYQ+ALELYE++H E+PEN ECLRYLVAIC+D  +P  HYQ KL+RLD+ T
Sbjct:  335 AAKDGLRHELLKREKEARTYMLTAARLIAPELRIDGDDSKMAGYQFCIESLKQDHESVSSEMEIERALKYMRVKEFGKAIEALKAFEKRDQHLKAMAATNLSFIYFLEGDIRSADKYADLAYEHDRYNARALVNKGNCLAVRGDYDTAKQFYLEAIGVEADCVEAIYDLGLVNLKMELWAEALQAFEKLHQVVPNNAEVIYQIAALHEAQGQ-VDVALKWYNILITRVPSDPGVLLRMGQLCNRNDDEAQAFHFHLESYRHYPVSLDVISWLGVWYVKSEMYEKAIHFFERAAQIQPKEVKWRLMVTSCYRRMGNYQRALELYEKVHAEHPENAECLRYLVAICKDLGQPCDHYQAKLSRLDQRT 698
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig86.20015.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FQU1_ECTSI0.000e+092.07Intraflagellar transport particle protein n=2 Tax=... [more]
A0A835Z9Y6_9STRA7.380e-18863.76Intraflagellar transport particle protein n=1 Tax=... [more]
A0A024UCQ4_9STRA1.900e-17159.56Uncharacterized protein n=5 Tax=Aphanomyces TaxID=... [more]
A0A397DF83_9STRA2.060e-17167.50Uncharacterized protein n=1 Tax=Aphanomyces astaci... [more]
A0A418B6Z1_9STRA3.690e-17060.92Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A1V9YJV6_9STRA9.260e-16768.70Intraflagellar Transport Protein 88 (Fragment) n=1... [more]
A0A6G0XD88_9STRA2.420e-16659.67Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A485KY66_9STRA1.050e-16462.88Aste57867_13477 protein n=1 Tax=Aphanomyces stella... [more]
A0A067CHZ2_SAPPC9.520e-16366.57Uncharacterized protein n=3 Tax=Saprolegnia TaxID=... [more]
A0A8J2S308_9STRA7.490e-16165.48Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig86contigEcto-sp13_S_contig86:142..4517 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score812.8
Seed ortholog evalue7.6e-233
Seed eggNOG ortholog2880.D7FQU1
Preferred nameIFT88
Model size1748
KEGG koko:K16474
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000226,GO:0000902,GO:0000904,GO:0001578,GO:0001654,GO:0001655,GO:0001669,GO:0001822,GO:0001885,GO:0001886,GO:0001889,GO:0001944,GO:0002064,GO:0002080,GO:0002081,GO:0002119,GO:0002164,GO:0003002,GO:0003006,GO:0003007,GO:0003008,GO:0003158,GO:0003205,GO:0003206,GO:0003279,GO:0003382,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005802,GO:0005813,GO:0005814,GO:0005815,GO:0005856,GO:0005929,GO:0005930,GO:0006810,GO:0006928,GO:0006950,GO:0006970,GO:0006996,GO:0006997,GO:0007010,GO:0007017,GO:0007018,GO:0007154,GO:0007165,GO:0007166,GO:0007219,GO:0007224,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007288,GO:0007289,GO:0007290,GO:0007368,GO:0007389,GO:0007399,GO:0007417,GO:0007420,GO:0007423,GO:0007507,GO:0007600,GO:0007605,GO:0007610,GO:0007626,GO:0008092,GO:0008104,GO:0008150,GO:0008283,GO:0008285,GO:0008544,GO:0008589,GO:0009628,GO:0009653,GO:0009790,GO:0009791,GO:0009799,GO:0009855,GO:0009887,GO:0009888,GO:0009894,GO:0009952,GO:0009953,GO:0009966,GO:0009967,GO:0009987,GO:0010468,GO:0010506,GO:0010646,GO:0010647,GO:0010970,GO:0012505,GO:0012506,GO:0014706,GO:0015630,GO:0016020,GO:0016043,GO:0016241,GO:0019222,GO:0019894,GO:0019953,GO:0021510,GO:0021511,GO:0021513,GO:0021537,GO:0022008,GO:0022412,GO:0022414,GO:0022603,GO:0022607,GO:0022611,GO:0023051,GO:0023052,GO:0023056,GO:0030030,GO:0030031,GO:0030141,GO:0030154,GO:0030162,GO:0030182,GO:0030317,GO:0030323,GO:0030324,GO:0030326,GO:0030659,GO:0030667,GO:0030705,GO:0030855,GO:0030900,GO:0030990,GO:0030992,GO:0031016,GO:0031090,GO:0031122,GO:0031175,GO:0031323,GO:0031329,GO:0031344,GO:0031410,GO:0031503,GO:0031514,GO:0031982,GO:0031984,GO:0032101,GO:0032103,GO:0032391,GO:0032421,GO:0032501,GO:0032502,GO:0032504,GO:0032838,GO:0032989,GO:0032991,GO:0033036,GO:0033043,GO:0034405,GO:0035051,GO:0035082,GO:0035107,GO:0035108,GO:0035113,GO:0035295,GO:0035640,GO:0035641,GO:0035735,GO:0035869,GO:0036064,GO:0036334,GO:0040011,GO:0040012,GO:0040017,GO:0040024,GO:0042073,GO:0042127,GO:0042481,GO:0042487,GO:0042490,GO:0042592,GO:0042692,GO:0042733,GO:0042995,GO:0043005,GO:0043053,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043567,GO:0043568,GO:0043583,GO:0044085,GO:0044087,GO:0044088,GO:0044422,GO:0044424,GO:0044425,GO:0044430,GO:0044431,GO:0044433,GO:0044441,GO:0044444,GO:0044446,GO:0044447,GO:0044450,GO:0044463,GO:0044464,GO:0044703,GO:0044782,GO:0045446,GO:0045595,GO:0045598,GO:0046907,GO:0048232,GO:0048468,GO:0048513,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048583,GO:0048584,GO:0048598,GO:0048609,GO:0048645,GO:0048646,GO:0048666,GO:0048699,GO:0048731,GO:0048732,GO:0048736,GO:0048738,GO:0048839,GO:0048853,GO:0048854,GO:0048856,GO:0048869,GO:0048870,GO:0048872,GO:0050678,GO:0050680,GO:0050789,GO:0050793,GO:0050794,GO:0050795,GO:0050877,GO:0050896,GO:0050920,GO:0050921,GO:0050954,GO:0051128,GO:0051146,GO:0051171,GO:0051179,GO:0051234,GO:0051239,GO:0051246,GO:0051641,GO:0051649,GO:0051674,GO:0051704,GO:0051716,GO:0055007,GO:0055115,GO:0060021,GO:0060091,GO:0060113,GO:0060119,GO:0060122,GO:0060173,GO:0060255,GO:0060259,GO:0060271,GO:0060322,GO:0060411,GO:0060426,GO:0060429,GO:0060491,GO:0060537,GO:0060541,GO:0060914,GO:0061008,GO:0061061,GO:0061351,GO:0065007,GO:0065008,GO:0070613,GO:0070925,GO:0071840,GO:0072001,GO:0072358,GO:0072359,GO:0080090,GO:0090102,GO:0097014,GO:0097223,GO:0097435,GO:0097458,GO:0097541,GO:0097542,GO:0097546,GO:0097708,GO:0097722,GO:0097730,GO:0097731,GO:0097732,GO:0097733,GO:0098588,GO:0098589,GO:0098791,GO:0098805,GO:0098862,GO:0099111,GO:0099503,GO:0099568,GO:0120025,GO:0120031,GO:0120032,GO:0120035,GO:0120036,GO:0120038,GO:1902017,GO:1902115,GO:1903317,GO:1903929,GO:1905515,GO:2000026,GO:2000027,GO:2000785
Exons11
EggNOG free text desc.non-motile cilium assembly
EggNOG OGsCOG0457@1,KOG2003@2759
Cds size1254
COG Functional cat.U
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03036
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig86.20015.1prot_Ecto-sp13_S_contig86.20015.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig86 720..4372 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464131.2012296-UTR-Ecto-sp13_S_contig86:141..4531681464131.2012296-UTR-Ecto-sp13_S_contig86:141..453Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig86 142..453 +
1681464131.213362-UTR-Ecto-sp13_S_contig86:682..7191681464131.213362-UTR-Ecto-sp13_S_contig86:682..719Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig86 683..719 +
1681464131.3339548-UTR-Ecto-sp13_S_contig86:4372..45171681464131.3339548-UTR-Ecto-sp13_S_contig86:4372..4517Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig86 4373..4517 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464131.2235935-CDS-Ecto-sp13_S_contig86:719..8511681464131.2235935-CDS-Ecto-sp13_S_contig86:719..851Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig86 720..851 +
1681464131.2333345-CDS-Ecto-sp13_S_contig86:1042..11331681464131.2333345-CDS-Ecto-sp13_S_contig86:1042..1133Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig86 1043..1133 +
1681464131.2426558-CDS-Ecto-sp13_S_contig86:1354..15061681464131.2426558-CDS-Ecto-sp13_S_contig86:1354..1506Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig86 1355..1506 +
1681464131.2525508-CDS-Ecto-sp13_S_contig86:1820..19671681464131.2525508-CDS-Ecto-sp13_S_contig86:1820..1967Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig86 1821..1967 +
1681464131.2701712-CDS-Ecto-sp13_S_contig86:2252..24011681464131.2701712-CDS-Ecto-sp13_S_contig86:2252..2401Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig86 2253..2401 +
1681464131.279837-CDS-Ecto-sp13_S_contig86:2561..26851681464131.279837-CDS-Ecto-sp13_S_contig86:2561..2685Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig86 2562..2685 +
1681464131.2894056-CDS-Ecto-sp13_S_contig86:3025..31341681464131.2894056-CDS-Ecto-sp13_S_contig86:3025..3134Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig86 3026..3134 +
1681464131.3000174-CDS-Ecto-sp13_S_contig86:3473..35951681464131.3000174-CDS-Ecto-sp13_S_contig86:3473..3595Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig86 3474..3595 +
1681464131.3116548-CDS-Ecto-sp13_S_contig86:3867..40421681464131.3116548-CDS-Ecto-sp13_S_contig86:3867..4042Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig86 3868..4042 +
1681464131.322371-CDS-Ecto-sp13_S_contig86:4319..43721681464131.322371-CDS-Ecto-sp13_S_contig86:4319..4372Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig86 4320..4372 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig86.20015.1

>prot_Ecto-sp13_S_contig86.20015.1 ID=prot_Ecto-sp13_S_contig86.20015.1|Name=mRNA_Ecto-sp13_S_contig86.20015.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=418bp
MDKKDWESGYDWVVETIKLDHEYLASKMEVEKALHYLKTKEFDKAIEHLK
AFEKKDQHLKAMAATNLAFIYFLEGEFKSADSYADMAIRHNRYNAKALVN
KGNCLFMSKEYERAKEIFLEAIGVEVDCVEAIFNLGLVNIHLGLPGDSLQ
AFEKLHTIIPNNTEVIYHIANLYEAHMENLPQASKWFNILLARVPTDPGI
LSRMGHIANKEDDDSQAYFYHKESYRHYPVNLDVISWLGVWYVKSELYEK
AIHYFETAAQIQPTEVKWRLMVTSCFRRMGNYQKALELYEQIHTEYPENL
ECLRYLVAICRDHDRPFQHYQHKLARLDRATPGRGPSTATTEVANPGEPA
PNPGREKRWSGGDRRGSEQRNAGGSDSGSGSPANAPNARVVEREGVGADR
GRGDEEFGDANVNDLLA*
back to top

mRNA from alignment at Ecto-sp13_S_contig86:142..4517+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig86.20015.1 ID=mRNA_Ecto-sp13_S_contig86.20015.1|Name=mRNA_Ecto-sp13_S_contig86.20015.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=4376bp|location=Sequence derived from alignment at Ecto-sp13_S_contig86:142..4517+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTTGATTCTAGTGGCTACCCCCGACGCAGTCCTAGCTCTTTCGTGGTGCT
GGCCTCGTCGGCAATAGCATGATGTCGAGCCCGACCAGAGGCCTCGTGCT
GGGGTGTTAACGTGCTAACACCGTATTCACGAGGCAACGATGGTCATGTA
CTTACCCTGTTCCCCTGGTCTACCCGACTTTTGAAAGGGAACTACCGAAG
ACGACGACGACGAGGACGAGTCCAAGGCGGCGGATGAGGCTGAAATCACA
GGACAGGCGGCGCCAGACAAGCTGCGGGCAGAGCTTCAGAGGCGAAGAAA
GGAAGCAGAACAGTGAGGAGTCGTAAAATATAGCTAGAGAGTTGAGTGGG
GGGTTCTCTTCGTGCTGGACTTGAACTTCCGCACACCGTTTGGAAACTTG
GTTCCGCGTGAGTCAGGCGTCCCTTCTGCAGAACCCATCTGCGTCGCTGT
ATCGCTGTGCTAGCTTTGTCCCGAGTACGATGGTAATGCGGTCAACAAAT
CCAACATCAGTCTGGCCTGCGCCTTGCACGCGTGTTTGCAGCTACGTCTT
TACGGCGGCAAAGCTCATAGCTCCGGTGATGGACAAGAAAGACTGGGAAT
CAGGATACGACTGGGTGGTGGAGACGATCAAGTTGGACCACGAGTACCTC
GCGTCCAAGATGGAAGTCGAGAAGGCCCTGCACTACCTCAAGACCAAAGA
ATTTGACAAGGTAACCGGGGATACCCCTTGACGTCGTCTGAGCGAATCGG
GCAAATTGTGTAGCACAACAATCCAGGCAACGTGATGTGATTCTGGAACA
CTACAACTTTCAACATTTCGGCGGGCCTTGCAGCTGTACTTGATCTCGCC
ATCCTCCGTTCGCTATCATTCTCTCTCCAAACACGACGAAAAAAAACGCA
GGCAATCGAGCACCTGAAGGCGTTCGAGAAGAAAGATCAGCATCTCAAAG
CAATGGCGGCCACCAACCTCGCATTCATCTACTTCCTCGAGGGTAATATG
TTGTCGAAATCCCAATTCCACAAAACCACTTTGTGTTAGTCGATAGGTCC
CTTTCACCGCAGGATGACCGCCACGTCAGACGTTAGTTCTTGTCAGTAGT
TTGTTGCTGGTGCCTGTCCTACCCTATCATGACGTTCTGTGATATACATG
GCGCTTGTGTTTCAGTTTAATTCATGCGCAATTTGCTCTCTTCGCTGCAT
CCTCGTGACTCAGGTGAATTCAAGAGCGCTGACTCGTATGCAGATATGGC
AATCCGGCACAACCGGTACAACGCCAAGGCTCTTGTTAACAAGGGAAACT
GCTTGTTCATGTCGAAGGAGTATGAGCGCGCGAAAGAAATATTCCTTGAG
GCTATCGGGGTGGAGGTAAAAACTGCCTCGAGAATATGTTGTTTAGGCAT
GCCCTAAGGCCACAAGGCGAATACTCTAGGGGTGAACAGCGTTCAACATT
ATGTGGATGAATGCGGGCTGCCTCCTTCAACTGCACAATCCTGGCCGTGT
CCACCGCGCAGCGATTTAGTGAAGTGGAACACGATTTCTTTCTTCGACAA
TCAACAGAACCACATTTTGTTCCCAATAGTCTCTACCCGTCCTGCTAGCT
TGCTTGGTACTTGCTTGCCTAGCATGCCCATGGTGCGGCTCCTTTTTAAG
CTAAACGTTGAACGACACTACCCTCACAGGTGGACTGCGTGGAGGCAATC
TTCAACCTGGGTCTGGTGAACATTCACTTGGGCCTCCCTGGCGACTCTCT
CCAGGCGTTCGAGAAGCTCCACACGATCATCCCGAACAACACGGAGGTCA
TCTATCACATCGCAAACCTATACGAGGTAACTCAGCGACAGGGTGCGCGG
GTGATGGGTGCATGTCTGTCCCTGGAAGAGGATTAAGTCCTCAATCAAAC
GACCGTCGTTTCACATTCGACTGTTGCACACTTGCGCGGCAGTGTGTCAA
TGTTCTGAACTTCGTTTTTCTATGAGCCGTAAGACGGCTGCAAGAGTTAT
CCCAAGCGGCATGCGCGCATGTTAGTGACCGATGGGCATGTTACTCGTTG
GGCTCGTTCGATAACACCACAAGGCTGCCCGTTGCTCTATTGGTGGATTT
TCTTTTGTCAGGCTCACATGGAGAACCTCCCGCAGGCGTCGAAGTGGTTC
AACATCTTACTTGCACGCGTTCCGACTGACCCAGGCATCTTGAGTCGAAT
GGGGCACATCGCGAACAAGGAAGATGATGATAGCCAGGCGTACTTCTACC
ATAAAGAGAGGTGATGAACATCCGCAATTCAGCCAGGGAGTGTCGCCACA
GCAACAAGGTGGAGCCCGCCTTATCTGTGATGTTCAACTATCGACCACGT
AAAATGTTGGTGTTCCGTGTTGAATTAAACAAACCTTGCTCGCGTGTGTA
AACGTCATTTTTGGCGCCAGCTATCGGCATTATCCTGTCAACTTGGACGT
GATATCGTGGTTGGGCGTGTGGTACGTGAAGAGCGAGCTTTACGAGAAAG
CAATACACTACTTTGAGACTGCGGCACAGATTCAGCCCACGGAGGTGAGA
CGCAAGAATTTAAGAGTGTCCTATGTGCCTGTTTGGGCTCTCCCGAAAAA
CGTTGTATGGTATCCTCGTGTATCTTTTGTTGATGTTTTGTTTCGTTGAC
GTTCCAAGAGCCGGTGAAAGCTACAATCCTGCTACCTCGTACTCCAAATC
CAGATGGACGGGTGATACCCTGCTATTATGGATGGGTGATACCCTGTTGT
TATGGGCGGGTGATACCCCGCTGTTGTCAGTGTTTTGACCGTTGTGCTTG
CGCCAAGCACCGATCTCTCTTTTTTATGTGTCGTGGAAAGTGCCTCCATC
TGTCCCTTACCCCCCTTCCCGTCCCCGTTCCAAGGTAAAATGGCGATTGA
TGGTCACGAGCTGTTTCCGCCGTATGGGGAACTACCAGAAGGCGCTGGAG
CTCTATGAGCAAATCCACACCGAGTACCCGGAAAACCTCGAATGTAAGCA
AGGGGTATCTCTCCTCTACATCTCGCCTACATTATCTCTGTCCACGGCTG
GTTCTTACGCGACTACTTGGGAGGCACGGGATGATTTAAGAATGAAATCG
ACCCTTGATCTCGGTGGAGTACGTTGTTTCCGGTGGATCAGTACCATCGA
CGGGGTGCTATGGTGGGAGTATTGAATTGTCATACATATCTCTTGTTCTC
CCTCCCTCCCTCCCTCTCTGTCTATATGTCTGTCTTTGTCAACCTCCTCC
TGTCAACGCCGTTGGCGTATTGTATGCAAATAACTTGCGATCAGCTCCAT
CGCCACCTTGTTCTGGTGGTCACGCGACACAGGTCTTCGCTACCTGGTGG
CAATTTGCCGAGATCACGACCGACCATTCCAACACTATCAGCATAAGCTA
GCACGATTGGACAGGGCGACGCCTGGAAGGGGTCCAAGCACGGCCACGAC
AGAGGTAAGGATAGAGAAATTTGCGGGGTCGTCTTGCACTGCTGCTTCGC
TGTTGCGCCATAAGCACGATTCCTTCTCAGCACACTAGATGTTTTGGCGT
ATTTCGTTTGAACGGCTTCAGCAGTCAGTCGGTACTCCTGGTGCCCTCGA
TACCTACTTTCCGCAGCAGGTACAACACCGACCATCCATGTGGTACGTCC
ACCTGAGGAACGTCGAGAATGTTCACACGCTCGTTCCGGGAAATTATGCT
ACTTTGTCTCATTTGTCGACCACTAGGTGGCCAATCCTGGCGAGCCTGCC
CCAAATCCCGGAAGAGAGAAGCGATGGTCTGGCGGAGACCGGCGGGGATC
CGAGCAACGAAACGCTGGAGGGTCCGATTCCGGCAGTGGATCTCCCGCAA
ACGCACCAAACGCCCGTGTTGTGGAACGAGAAGGCGTAGGAGCGGACCGA
GGTTTGGTTCTTGCTTGCGTGCCTAAACGAGTTCTTGGTTAACTTCAACT
ATGCCCAGCCTCGTCCGTGCTCTCCTCTCAGCTCTCGACATGGGGGCCTG
CGGCGCGGGCTTGTTGGAGCATAATTAATTTCCACCTGTCTCGACCGATT
TCATCGACGCCACCGTGAGATTGGTCGCAGAAAAGGAACCATGTGAAGCC
ATTCCAACGCCACCATTGCTGTTGTGTTCTTCAAAAGGCATAGACAAAAT
CGTTGCCTGCCTGTGTGTTGTTGTACAGGGAGGGGGGACGAAGAGTTCGG
CGACGCCAACGTGAACGACCTCCTCGCCTAATGTCCTGGAGCGGGGAGCT
ATGCGCGAACCACAAGCAAGCATGGTTGTGGCGCGATGGATTGGAATTGT
ACGCGCTATGGTGCGTCGTGGGACGCAGCTGTTGCAAGCGGGGAACTGGT
GTCGCTAGCGTGTTTTCGACCCGGGC
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig86:142..4517+

>mRNA_Ecto-sp13_S_contig86.20015.1 ID=mRNA_Ecto-sp13_S_contig86.20015.1|Name=mRNA_Ecto-sp13_S_contig86.20015.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1254bp|location=Sequence derived from alignment at Ecto-sp13_S_contig86:142..4517+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACAAGAAAGACTGGGAATCAGGATACGACTGGGTGGTGGAGACGAT
CAAGTTGGACCACGAGTACCTCGCGTCCAAGATGGAAGTCGAGAAGGCCC
TGCACTACCTCAAGACCAAAGAATTTGACAAGGCAATCGAGCACCTGAAG
GCGTTCGAGAAGAAAGATCAGCATCTCAAAGCAATGGCGGCCACCAACCT
CGCATTCATCTACTTCCTCGAGGGTGAATTCAAGAGCGCTGACTCGTATG
CAGATATGGCAATCCGGCACAACCGGTACAACGCCAAGGCTCTTGTTAAC
AAGGGAAACTGCTTGTTCATGTCGAAGGAGTATGAGCGCGCGAAAGAAAT
ATTCCTTGAGGCTATCGGGGTGGAGGTGGACTGCGTGGAGGCAATCTTCA
ACCTGGGTCTGGTGAACATTCACTTGGGCCTCCCTGGCGACTCTCTCCAG
GCGTTCGAGAAGCTCCACACGATCATCCCGAACAACACGGAGGTCATCTA
TCACATCGCAAACCTATACGAGGCTCACATGGAGAACCTCCCGCAGGCGT
CGAAGTGGTTCAACATCTTACTTGCACGCGTTCCGACTGACCCAGGCATC
TTGAGTCGAATGGGGCACATCGCGAACAAGGAAGATGATGATAGCCAGGC
GTACTTCTACCATAAAGAGAGCTATCGGCATTATCCTGTCAACTTGGACG
TGATATCGTGGTTGGGCGTGTGGTACGTGAAGAGCGAGCTTTACGAGAAA
GCAATACACTACTTTGAGACTGCGGCACAGATTCAGCCCACGGAGGTAAA
ATGGCGATTGATGGTCACGAGCTGTTTCCGCCGTATGGGGAACTACCAGA
AGGCGCTGGAGCTCTATGAGCAAATCCACACCGAGTACCCGGAAAACCTC
GAATGTCTTCGCTACCTGGTGGCAATTTGCCGAGATCACGACCGACCATT
CCAACACTATCAGCATAAGCTAGCACGATTGGACAGGGCGACGCCTGGAA
GGGGTCCAAGCACGGCCACGACAGAGGTGGCCAATCCTGGCGAGCCTGCC
CCAAATCCCGGAAGAGAGAAGCGATGGTCTGGCGGAGACCGGCGGGGATC
CGAGCAACGAAACGCTGGAGGGTCCGATTCCGGCAGTGGATCTCCCGCAA
ACGCACCAAACGCCCGTGTTGTGGAACGAGAAGGCGTAGGAGCGGACCGA
GGGAGGGGGGACGAAGAGTTCGGCGACGCCAACGTGAACGACCTCCTCGC
CTAA
back to top