mRNA_Ecto-sp13_S_contig85927.20007.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig85927.20007.1
Unique NamemRNA_Ecto-sp13_S_contig85927.20007.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig85927.20007.1 vs. uniprot
Match: A0A6H5L2U1_9PHAE (BTB domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L2U1_9PHAE)

HSP 1 Score: 122 bits (307), Expect = 4.060e-31
Identity = 61/63 (96.83%), Postives = 63/63 (100.00%), Query Frame = 1 
Query:    1 VTDENVEALLDLSARYGVSLLRRHCCAFLAGSASPATACSLLSVADRYDCHRLRRVILAYTLD 189
            VTDENVEALLDLSARYGVSLLRRHCCAFLAGSASPATACSLLSVADRYDCHRLRRV+LAYTL+
Sbjct:  222 VTDENVEALLDLSARYGVSLLRRHCCAFLAGSASPATACSLLSVADRYDCHRLRRVMLAYTLE 284
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig85927.20007.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L2U1_9PHAE4.060e-3196.83BTB domain-containing protein n=2 Tax=Ectocarpus T... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig85927contigEcto-sp13_S_contig85927:8..223 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score124.8
Seed ortholog evalue1.6e-26
Seed eggNOG ortholog2880.D7FNF7
Model size216
KEGG rclassRC00010,RC02798
KEGG koko:K01915,ko:K10443,ko:K13956
KEGG ReactionR00253
KEGG Pathwayko00220,ko00250,ko00630,ko00910,ko01100,ko01120,ko01230,ko02020,ko04217,ko04724,ko04727,map00220,map00250,map00630,map00910,map01100,map01120,map01230,map02020,map04217,map04724,map04727
Hectar predicted targeting categoryother localisation
Exons1
EggNOG free text desc.protein ubiquitination
EggNOG OGsKOG4441@1,KOG4441@2759
EC6.3.1.2
Cds size216
COG Functional cat.KLT
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121,ko04147
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464130.584448-CDS-Ecto-sp13_S_contig85927:7..2231681464130.584448-CDS-Ecto-sp13_S_contig85927:7..223Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig85927 8..223 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig85927.20007.1prot_Ecto-sp13_S_contig85927.20007.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig85927 8..223 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig85927.20007.1

>prot_Ecto-sp13_S_contig85927.20007.1 ID=prot_Ecto-sp13_S_contig85927.20007.1|Name=mRNA_Ecto-sp13_S_contig85927.20007.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=72bp
VTDENVEALLDLSARYGVSLLRRHCCAFLAGSASPATACSLLSVADRYDC
HRLRRVILAYTLDVSFVLSLSC
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mRNA from alignment at Ecto-sp13_S_contig85927:8..223+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig85927.20007.1 ID=mRNA_Ecto-sp13_S_contig85927.20007.1|Name=mRNA_Ecto-sp13_S_contig85927.20007.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=216bp|location=Sequence derived from alignment at Ecto-sp13_S_contig85927:8..223+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCACTGACGAGAACGTGGAGGCGCTGCTGGACCTCAGCGCGAGGTACGG
CGTGTCGCTGCTGCGGCGGCACTGCTGCGCCTTCCTGGCGGGCTCCGCAA
GCCCTGCTACGGCCTGCTCCTTGCTCTCGGTGGCCGACCGCTACGACTGC
CACAGGCTGCGGAGAGTTATCCTCGCGTACACGCTAGACGTGAGTTTTGT
TCTCTCGCTCTCGTGT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig85927:8..223+

>mRNA_Ecto-sp13_S_contig85927.20007.1 ID=mRNA_Ecto-sp13_S_contig85927.20007.1|Name=mRNA_Ecto-sp13_S_contig85927.20007.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=216bp|location=Sequence derived from alignment at Ecto-sp13_S_contig85927:8..223+ (Ectocarpus species13 EcNAP12_S_4_19m)
GTCACTGACGAGAACGTGGAGGCGCTGCTGGACCTCAGCGCGAGGTACGG
CGTGTCGCTGCTGCGGCGGCACTGCTGCGCCTTCCTGGCGGGCTCCGCAA
GCCCTGCTACGGCCTGCTCCTTGCTCTCGGTGGCCGACCGCTACGACTGC
CACAGGCTGCGGAGAGTTATCCTCGCGTACACGCTAGACGTGAGTTTTGT
TCTCTCGCTCTCGTGT
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