mRNA_Ecto-sp13_S_contig859.20003.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig859.20003.1
Unique NamemRNA_Ecto-sp13_S_contig859.20003.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig859.20003.1 vs. uniprot
Match: D7G5B8_ECTSI (VHS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B8_ECTSI)

HSP 1 Score: 723 bits (1867), Expect = 9.440e-262
Identity = 403/418 (96.41%), Postives = 406/418 (97.13%), Query Frame = 1
Query:    1 MDFLANIGIPGTEFSTGIGSLIEKATSESLVNTDWALNMQICDEINHQGDGPSHAAKALKRRLKSDNPKILELTLTLCETTMKNCSRPLHRALGSREFLAEVAGLCSGQKGYEVRSRALGLIQDWGIAFQSDRSLAYSETYGRLKAQGARFPEGTDAATTAFTPAAASYGAXXXXXXXXXXXXXXXXXXXXXX-----VRSAPEAPPQTMEKLEEDLQMVKDKITLCREMLPESAGVDKDPALSEVVGFLEACRPRMVDLVEAGVGGALGEDTFAKCLQINDALLRTLDAEREGTPIAVEDDTSGGAAPLLDLDGGSEDPLKGKMSTFSIGDDGDDFAELRKGKPPAAAGKGARGSVTKLGAVPLKTPAAEPPKATPAGDDDLDDFLNSLTDDAGPAAAAAGAADDKLDVEELDKVLG 1239
            MDFLANIGIPGTEF+TGIGSLIEKATSESLVNTDWALNMQICDEINHQGDGPSHAAKALKRRLKSDNPKIL LTLTLCETTMKNCSRPLHRALG+REFLAEVAGLC+GQKGYEVRSRALGLIQDWGIAFQSDRSLAYSETYGRLKAQGARFPE TDAATTAFTPAAASYGAXXXXXXXXXXXXXXXXXXXXXX     VRSA EAPPQTMEKLEEDLQMVKDKITLCREMLPESAGVDKD ALSEVVGFLEACRPRMVDLVEAGVGGALGEDTFAKCLQINDALLRTLDAEREGTPIAVEDD SGGAAPLLDLDGGSEDPLKGKMSTFSIGDDGDDFAELRKGKPPAAAGKGA GSVTKLGAVPLKTPAAEPPKATPAGDDDLDDFLNSLTDDAGPAAAA GAADDKLDVEELDKVLG
Sbjct:    1 MDFLANIGIPGTEFTTGIGSLIEKATSESLVNTDWALNMQICDEINHQGDGPSHAAKALKRRLKSDNPKILGLTLTLCETTMKNCSRPLHRALGAREFLAEVAGLCNGQKGYEVRSRALGLIQDWGIAFQSDRSLAYSETYGRLKAQGARFPEATDAATTAFTPAAASYGAXXXXXXXXXXXXXXXXXXXXXXXXXXXVRSAAEAPPQTMEKLEEDLQMVKDKITLCREMLPESAGVDKDTALSEVVGFLEACRPRMVDLVEAGVGGALGEDTFAKCLQINDALLRTLDAEREGTPIAVEDDISGGAAPLLDLDGGSEDPLKGKMSTFSIGDDGDDFAELRKGKPPAAAGKGASGSVTKLGAVPLKTPAAEPPKATPAGDDDLDDFLNSLTDDAGPAAAA-GAADDKLDVEELDKVLG 417          
BLAST of mRNA_Ecto-sp13_S_contig859.20003.1 vs. uniprot
Match: A0A6H5L7N0_9PHAE (VHS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7N0_9PHAE)

HSP 1 Score: 357 bits (915), Expect = 4.720e-120
Identity = 206/214 (96.26%), Postives = 210/214 (98.13%), Query Frame = 1
Query:    1 MDFLANIGIPGTEFSTGIGSLIEKATSESLVNTDWALNMQICDEINHQGDGPSHAAKALKRRLKSDNPKILELTLTLCETTMKNCSRPLHRALGSREFLAEVAGLCSGQKGYEVRSRALGLIQDWGIAFQSDRSLAYSETYGRLKAQGARFPEGTDAATTAFTPAAASYGAXXXXXXXXXXXXXXXXXXXXXXVRSAPEAPPQTMEKLEEDLQM 642
            MDFLANIGIPGTEF+TGIGSLIEKATSESLVNTDWALNMQICDEINHQGDGPSHAAKALKRRLKSDNPKILELTLTLCETTMKNCSRPLHRALG+REFLAEVAGLC+GQKGYEVRSRALGLIQDWGIAFQSDRSLAYSETYGRLKAQGARFPE TDAATTAFTPAAASYG XXXXXXXXXXXXXXXXXXXXX VRSA EAPPQTMEKLEEDLQ+
Sbjct:    1 MDFLANIGIPGTEFTTGIGSLIEKATSESLVNTDWALNMQICDEINHQGDGPSHAAKALKRRLKSDNPKILELTLTLCETTMKNCSRPLHRALGAREFLAEVAGLCNGQKGYEVRSRALGLIQDWGIAFQSDRSLAYSETYGRLKAQGARFPEATDAATTAFTPAAASYGXXXXXXXXXXXXXXXXXXXXXX-VRSAAEAPPQTMEKLEEDLQV 213          
BLAST of mRNA_Ecto-sp13_S_contig859.20003.1 vs. uniprot
Match: A0A7S2GD13_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GD13_9STRA)

HSP 1 Score: 236 bits (602), Expect = 4.360e-72
Identity = 130/287 (45.30%), Postives = 177/287 (61.67%), Query Frame = 1
Query:   43 STGIGSLIEKATSESLVNTDWALNMQICDEINHQGDGPSHAAKALKRRLKSDNPKILELTLTLCETTMKNCSRPLHRALGSREFLAEVAGLCSGQKGYEVRSRALGLIQDWGIAFQSDRS---LAYSETYGRLKAQGARFPEGTDAATTAFTPAAASYGAXXXXXXXXXXXXXXXXXXXXXXVRSAPEAPPQTMEKLEEDLQMVKDKITLCREMLPESAGVDKDPALSEVVGFLEACRPRMVDLVEAGVGGALGEDTFAKCLQINDALLRTLDAEREGTPIAVEDDT 894
            S+ I   I KAT   L+NTDW+ N++ICD IN   DG   A++ L+RRLK+DN ++L LTL L +  +KNCS  +H A+ S+EF+ +V  L  G++G+EVR +AL LIQ W I F+ DRS   + ++ETY +LK +G  FP+    A        +S  A                          P  P     KL +DL +V +KI LCREMLPES+G++ D AL+EVVGFLEAC+PRMVDL+E G+ G LGED  ++ LQ+ND LL+TL+AE+ GTP+ VE  T
Sbjct:    5 SSPISDAISKATDSMLMNTDWSANLEICDLINSSPDGSVTASQTLRRRLKNDNMRVLTLTLELTDACIKNCSSDMHSAVASKEFMGDVVALTDGKQGWEVREQALKLIQAWAIEFK-DRSGPFVVFTETYVQLKTKGVTFPDPEHTAPVFMEEPPSSQAAE-------------------------PVEPTDPTMKLAQDLSVVAEKIKLCREMLPESSGIETDDALAEVVGFLEACKPRMVDLIECGMQGMLGEDLVSQTLQVNDDLLKTLEAEKNGTPLPVETKT 265          
BLAST of mRNA_Ecto-sp13_S_contig859.20003.1 vs. uniprot
Match: A0A835Z2K5_9STRA (VHS domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2K5_9STRA)

HSP 1 Score: 236 bits (602), Expect = 1.110e-69
Identity = 150/304 (49.34%), Postives = 197/304 (64.80%), Query Frame = 1
Query:   37 EFSTGIGSLIEKATSESLVNTDWALNMQICDEINHQGDGPSHAAKALKRRLKSDNPKILELTLTLCETTMKNCSRPLHRALGSREFLAEVAGLCSGQKGYEVRSRALGLIQDWGIAFQSDRSLAYSETYGRLKAQGARFPEGTDAATTAFTPAAASYGAXXXXXXXXXXXXXXXXXXXXXXVRSAPEAPPQTMEKLEEDLQMVKDKITLCREMLPESAGVDKDPALSEVVGFLEACRPRMVDLVEAGVGGALGEDTFAKCLQINDALLRTLDAEREGTPIAVEDDTSGGAAPLLDLDGGSEDPL 948
            EFST +G ++  AT+E+LV  DW+LNM + D I+   +GP +AAKAL+RRLKS+N K++ LTLTLC+  +KNC  PLH ALG+REFL  V  +  G+ G +V+ +AL L+Q WG AF     L YS  Y R++ QGA FP   +     F P  A+   XXXXXXXXXXXXXXXXX            P Q + KL+ DL  V++K+ LC+++L E+ G++ D  L E++GFLEACRPR+ +L++AG+ G L  D    CL+INDALLRTL AER+GT I VE    G      DL  GSED L
Sbjct:   42 EFSTYVGEMVMHATAETLVAADWSLNMGVADTIDATVEGPQNAAKALQRRLKSENAKVVSLTLTLCDVCVKNCRPPLHAALGTREFLGHVEDVAGGRLGPQVQQQALELVQQWGEAFAGSPHLYYSSLYTRMREQGAAFPPRPEGDAPLFLPPRAAPAXXXXXXXXXXXXXXXXXX------------PAQELVKLKLDLVCVQEKLELCQQVLQETPGIEHDDVLRELIGFLEACRPRLHELIQAGIIGHLEPDVLEGCLKINDALLRTLAAERDGTKIGVESIDLG----FGDLQPGSEDEL 329          
BLAST of mRNA_Ecto-sp13_S_contig859.20003.1 vs. uniprot
Match: A0A7S2W1F0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W1F0_9STRA)

HSP 1 Score: 204 bits (519), Expect = 5.360e-57
Identity = 125/314 (39.81%), Postives = 170/314 (54.14%), Query Frame = 1
Query:    1 MDFLANIGIPGTEFSTGIGSLIEKATSESLVNTDWALNMQICDEINHQGDGP-SHAAKALKRRLKSDNPKILELTLTLCETTMKNCSRPLHRALGSREFLAEVAGLCSGQKGYEVRSRALGLIQDWGIAFQSDRSL--AYSETYGRLKAQGARFPEGTDAA-------------------TTAFTPAAASYGAXXXXXXXXXXXXXXXXXXXXXXVRSAPEAPPQTMEKLEEDLQMVKDKITLCREMLPESAGVDKDPALSEVVGFLEACRPRMVDLVEAGVGGALGEDTFAKCLQINDALLRTLDAEREGTPI 876
            MDF        T   + +   IE+AT   L+ TDW  N++ICD IN  G    + A + L+R+L+SD PK + L L L +  +KNC+  LHRA+ S+ F+ +V  L  G+KG+E +  +L LIQ+WG  F++ RS    + +TY  LK +GA FPE   +A                    +A  PAAAS G                         S        M+KL +DL  V++KI LCREMLPES G++ D ALSEVVGFLEAC+PR+ DL+EAG+   L ED  +  L + D L +TL+AER GTPI
Sbjct:    1 MDFFRFDSNSPTNDGSPVAQAIERATDPMLLTTDWGKNLEICDMINTGGQAAVTSATRMLRRQLRSDQPKTVMLALELTDACVKNCAFELHRAVASKAFMGDVVALAEGKKGFEPQELSLKLIQEWGKEFKATRSELPGFFDTYVGLKTKGAAFPESESSAPVFSPPPQITAEEPPQTGHASASAPAAASSGPGPSALPGASPGQPAPSPTGGPGEAS--------MDKLRQDLVAVEEKIKLCREMLPESPGIEHDEALSEVVGFLEACQPRLSDLIEAGMQDILSEDILSYTLHVFDELQKTLEAERTGTPI 306          
BLAST of mRNA_Ecto-sp13_S_contig859.20003.1 vs. uniprot
Match: A0A812V5W7_SYMMI (TOL1 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812V5W7_SYMMI)

HSP 1 Score: 192 bits (489), Expect = 3.230e-55
Identity = 116/289 (40.14%), Postives = 159/289 (55.02%), Query Frame = 1
Query:    1 MDFLANIGIPGTEFSTGIGSLIEKATSESLVNTDWALNMQICDEINHQGDGPSHAAKALKRRLKSDNPKILELTLTLCETTMKNCSRPLHRALGSREFLAEVAGLCSGQKGYEVRSRALGLIQDWGIAFQSDRSLA--YSETYGRLKAQGARFPEGTDAATTAFTPAAASYGAXXXXXXXXXXXXXXXXXXXXXXVRSAPEAPPQTMEKLEEDLQMVKDKITLCREMLPESAGVDKDPALSEVVGFLEACRPRMVDLVEAGVGGALGEDTFAKCLQINDALLRTLDAER 861
            MDF      P  E ST IG L++  T   L+  DWA N++ICD IN   +G + A KA+  +LKS +PK++ L LT+ ET  KNC         +R F+ E+  + +G+KG++ +  AL +IQ WG++++  R+    + ETY  LK +G RFPE  D  T+                                 V  A         KL  DL +V +KI LCREMLPES G+ +D  L+EVVGFLEAC+ RM+DL+E G  G L ED F  CL++NDALLRTL+AE+
Sbjct:    1 MDFFGFSDAP--ELSTRIGVLVKSGTDPLLLGPDWAKNIEICDHINSHNNG-ADAVKAILHQLKSSDPKVVALALTMIETCTKNCVSVPQNI--NRSFMDEMVNISTGRKGFDNQEDALKMIQMWGLSYERRRNELPLFFETYMTLKTRGIRFPEPEDQPTS---------------PQSRGNSDSACAHPLSRSVDMAAGNQSDDSTKLRNDLGVVMEKIRLCREMLPESPGIQQDEILAEVVGFLEACQERMIDLIETGTQGLLAEDVFELCLRVNDALLRTLEAEK 269          
BLAST of mRNA_Ecto-sp13_S_contig859.20003.1 vs. uniprot
Match: F0YK31_AURAN (VHS domain-containing protein n=2 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YK31_AURAN)

HSP 1 Score: 183 bits (465), Expect = 7.500e-51
Identity = 100/268 (37.31%), Postives = 150/268 (55.97%), Query Frame = 1
Query:   61 LIEKATSESLVN-TDWALNMQICDEINHQGDGPSHAAKALKRRLKSDNPKILELTLTLCETTMKNCSRPLHRALGSREFLAEVAGLCSGQKGYEVRSRALGLIQDWGIAFQSDRSL-AYSETYGRLKAQGARFPEGTDAATTAFTPAAASYGAXXXXXXXXXXXXXXXXXXXXXXVRSAPEAPPQTMEKLEEDLQMVKDKITLCREMLPESAGVDKDPALSEVVGFLEACRPRMVDLVEAGVGGALGEDTFAKCLQINDALLRTLDAE 858
            L+E ATS+  +   D+ +N++ICD +          A A+K+RL  ++  +  L+LTL E  +KNC   +H A+G ++ L+E+A LC G  G EV+ +AL L+Q WG+AF+S  +L A+++TY  LK +G  FP G +     FTP                             +          + K+  D+++V +KI LC+EM+P S G+D D AL+EVVGFLEACRPR+  LVE+G+ GA G++T   CL++ND L   L  E
Sbjct:    4 LVESATSDVRMGLVDFGVNLEICDALERNPSDAVTMAFAVKKRLGKNDAHVTALSLTLLEMCVKNCGEAVHAAVGQQQILSEIAKLCEGGSGEEVKRQALALVQQWGVAFESRDALPAFADTYTALKVKGFEFPTGNEENAPVFTP------------PRQDGTVVQDDAVYAAALADGSLDRANALAKVRADVEIVAEKIRLCKEMVPNSPGIDHDDALAEVVGFLEACRPRLAILVESGLSGAFGDETLTSCLKVNDDLHEALQGE 259          
BLAST of mRNA_Ecto-sp13_S_contig859.20003.1 vs. uniprot
Match: A0A4D9D0H1_9STRA (VHS domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D0H1_9STRA)

HSP 1 Score: 178 bits (452), Expect = 5.310e-48
Identity = 108/298 (36.24%), Postives = 169/298 (56.71%), Query Frame = 1
Query:   34 TEFSTGIGSLIEKATSESLVNTDWALNMQICDEINHQGD-GPSHAAKALKRRLKSDNPKILELTLTLCETTMKNCSRP-----LHRALGSREFLAEVAGLCSGQKGYEVRSRALGLIQDWGIAFQSDR-SLAYSETYGRLKAQGARFPEGTDAATTAFTPAAASYGAXXXXXXXXXXXXXXXXXXXXXXV---RSAPEAPPQT------MEKLEEDLQMVKDKITLCREMLPESAGVDK-DPALSEVVGFLEACRPRMVDLVEAGVGGA-----LGEDTFAKCLQINDALLRTLDAER 861
            ++  T +G LI+ ATSE+LV  DW+LN+ +CD +N   +     A +A +R+L+  NPK+L+LTLTL ET +KN  +P      H  +GS +FLA+++ L  G++G+EV+ +AL L+Q WG++F+S R +LA+  TY  L+ QG +FP   +A++  FTP A    A                           S P A P+       + KL++DL  V+++   C  ML  S G++  D AL+E VGFLEAC+ R+ +++EAG+GG      L E      L++++ ++  L AER
Sbjct:   14 SDLLTPVGRLIDDATSETLVTPDWSLNLAVCDAVNSDDEFAGEQAMRAFRRKLREANPKVLQLTLTLLETVIKNADQPGRESRFHALVGSPDFLAKISSLTDGKRGWEVKEQALALLQQWGLSFESRRDTLAFYSTYMDLRLQGVQFPR-LEASSPIFTPPAQPSPATLPASTTPTSEGVFNAETTEIDKGVPASLPSAAPRARTADRDLTKLQQDLGEVRERARACFAMLSHSEGIESGDEALAEAVGFLEACKERLTEVIEAGMGGGEESITLTEAVLELALEVHEEVVEVLGAER 310          
BLAST of mRNA_Ecto-sp13_S_contig859.20003.1 vs. uniprot
Match: A0A3M6VCH0_9STRA (VHS domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VCH0_9STRA)

HSP 1 Score: 154 bits (390), Expect = 5.710e-40
Identity = 96/267 (35.96%), Postives = 142/267 (53.18%), Query Frame = 1
Query:   52 IGSLIEKATSESLVNTDWALNMQICDEINHQGDGPSHAAKALKRRLKSDNPKILELTLTLCETTMKNCSRPLHRALGSREFLAEVAGLCSGQKGYEVRSRALGLIQDWGIAFQSDRSLAYSETYGRLKAQGARFPEGTDAATTAFTPAAASYGAXXXXXXXXXXXXXXXXXXXXXXVRSAPEAPPQTMEKLEEDLQMVKDKITLCREMLPESAGVDKDPALSEVVGFLEACRPRMVDLVEAGVGGALGEDTFAKCLQINDALLRTLD 852
            +  L+ +AT E+LV  +WALNM+ICD  N          + L+ RL+S  PK+  LTL L ET +KN  R LH  +GS  FL EVA    G  G +V+++AL LI+ W  AF+     A+ + Y +LK QG  FPE  +     FTP +++  A                               + +EKL++DL++V+ KI L R+M   + G   +  L +V+ FL  C+PRM  L+E GV G + E T  +CL +ND+L++TL+
Sbjct:   11 VEELVARATDEALVEPEWALNMEICDCANANPTVCDDIVRLLQCRLQSGEPKVTLLTLILTETVVKNGPRALHSQVGSTFFLKEVAAFSDGSLGIDVQNQALLLIRQWADAFKGSELQAFEDIYRQLKMQGVSFPE-VENDVPIFTPPSSTASAFAATGQDESYPAVVSERCTRK----------KQLEKLQDDLKLVQQKIKLLRDM--HTCGQTGEQ-LEDVLDFLRQCQPRMNTLIEGGVMGKIDEHTLEQCLNVNDSLMKTLE 263          
BLAST of mRNA_Ecto-sp13_S_contig859.20003.1 vs. uniprot
Match: M4C0L4_HYAAE (VHS domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C0L4_HYAAE)

HSP 1 Score: 136 bits (342), Expect = 4.940e-33
Identity = 86/264 (32.58%), Postives = 134/264 (50.76%), Query Frame = 1
Query:   61 LIEKATSESLVNTDWALNMQICDEINHQGDGPSHAAKALKRRLKSDNPKILELTLTLCETTMKNCSRPLHRALGSREFLAEVAGLCSGQKGYEVRSRALGLIQDWGIAFQSDRSLA-YSETYGRLKAQGARFPEGTDAATTAFTPAAASYGAXXXXXXXXXXXXXXXXXXXXXXVRSAPEAPPQTMEKLEEDLQMVKDKITLCREMLPESAGVDKDPALSEVVGFLEACRPRMVDLVEAGVGGALGEDTFAKCLQINDALLRTL 849
            L+++AT E+LV  +WALNM +CD +N   +        LK+RL+   PK+  L L L ET +KN  + LH  +G++ FL E+  L  G  G +V++RAL LI+ W  AFQ    L  + + Y +L+ Q   FPE  +     FTP ++   A                               Q +EKL+ DL +V++K+ L R++    A   ++  + + + FL  C+ RM  L+E GV G + E T  +CL +ND L++ L
Sbjct:    8 LVDRATDETLVEPEWALNMSLCDCVNAHHEVCEDVVHFLKQRLQLRQPKVALLALILTETLVKNGPQVLHTQVGTQWFLQEIVALVDGSLGVDVQTRALLLIRQWAEAFQGQSELTEFQDVYQQLQKQNITFPEVKNDVPI-FTPPSSMSSACAVSEGDESAAAGATLGRRTRA---------QQLEKLQADLVVVQEKMKLLRDL---HARGQQEEEMEDALDFLRQCQQRMNTLIEGGVMGKIDEHTLEQCLNVNDGLMKIL 258          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig859.20003.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G5B8_ECTSI9.440e-26296.41VHS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5L7N0_9PHAE4.720e-12096.26VHS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S2GD13_9STRA4.360e-7245.30Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
A0A835Z2K5_9STRA1.110e-6949.34VHS domain-containing protein n=1 Tax=Tribonema mi... [more]
A0A7S2W1F0_9STRA5.360e-5739.81Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A812V5W7_SYMMI3.230e-5540.14TOL1 protein n=1 Tax=Symbiodinium microadriaticum ... [more]
F0YK31_AURAN7.500e-5137.31VHS domain-containing protein n=2 Tax=Aureococcus ... [more]
A0A4D9D0H1_9STRA5.310e-4836.24VHS domain-containing protein n=2 Tax=Monodopsidac... [more]
A0A3M6VCH0_9STRA5.710e-4035.96VHS domain-containing protein n=1 Tax=Peronospora ... [more]
M4C0L4_HYAAE4.940e-3332.58VHS domain-containing protein n=1 Tax=Hyaloperonos... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig859contigEcto-sp13_S_contig859:6635..12296 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score728.0
Seed ortholog evalue2.4e-207
Seed eggNOG ortholog2880.D7G5B8
Preferred nameGGA2
Model size1242
KEGG koko:K12346,ko:K12404,ko:K20524
KEGG TC2.A.55.1
KEGG Pathwayko04142,map04142
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005543,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005802,GO:0005829,GO:0005856,GO:0005938,GO:0006508,GO:0006511,GO:0006807,GO:0006810,GO:0006886,GO:0006892,GO:0006895,GO:0006896,GO:0006897,GO:0006996,GO:0007010,GO:0007015,GO:0007034,GO:0008104,GO:0008150,GO:0008152,GO:0008289,GO:0009056,GO:0009057,GO:0009987,GO:0012505,GO:0015031,GO:0015629,GO:0015833,GO:0016043,GO:0016192,GO:0016197,GO:0016482,GO:0019538,GO:0019941,GO:0030029,GO:0030036,GO:0030163,GO:0030479,GO:0030863,GO:0030864,GO:0031984,GO:0032182,GO:0032509,GO:0032511,GO:0033036,GO:0033365,GO:0034613,GO:0035091,GO:0042886,GO:0043130,GO:0043162,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043328,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044430,GO:0044431,GO:0044444,GO:0044446,GO:0044448,GO:0044464,GO:0045184,GO:0045324,GO:0046907,GO:0048193,GO:0051179,GO:0051234,GO:0051603,GO:0051641,GO:0051649,GO:0061645,GO:0070273,GO:0070727,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0071944,GO:0071985,GO:0072594,GO:0072665,GO:0072666,GO:0097435,GO:0098657,GO:0098791,GO:0099568,GO:1901564,GO:1901565,GO:1901575,GO:1901981
Exons8
EggNOG free text desc.intracellular protein transport
EggNOG OGsKOG1087@1,KOG1087@2759
Ec32 ortholog descriptionENTH/VHS
Ec32 orthologEc-14_006940.1
Cds size1242
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko02000,ko04131
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig859.20003.1prot_Ecto-sp13_S_contig859.20003.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig859 6635..12296 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464130.1124754-CDS-Ecto-sp13_S_contig859:6634..67681681464130.1124754-CDS-Ecto-sp13_S_contig859:6634..6768Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig859 6635..6768 -
1681464130.1262946-CDS-Ecto-sp13_S_contig859:7313..74641681464130.1262946-CDS-Ecto-sp13_S_contig859:7313..7464Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig859 7314..7464 -
1681464130.1382072-CDS-Ecto-sp13_S_contig859:7846..79811681464130.1382072-CDS-Ecto-sp13_S_contig859:7846..7981Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig859 7847..7981 -
1681464130.1492789-CDS-Ecto-sp13_S_contig859:8537..87201681464130.1492789-CDS-Ecto-sp13_S_contig859:8537..8720Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig859 8538..8720 -
1681464130.1701727-CDS-Ecto-sp13_S_contig859:10063..102741681464130.1701727-CDS-Ecto-sp13_S_contig859:10063..10274Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig859 10064..10274 -
1681464130.1838338-CDS-Ecto-sp13_S_contig859:11023..111121681464130.1838338-CDS-Ecto-sp13_S_contig859:11023..11112Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig859 11024..11112 -
1681464130.1944346-CDS-Ecto-sp13_S_contig859:11651..118581681464130.1944346-CDS-Ecto-sp13_S_contig859:11651..11858Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig859 11652..11858 -
1681464130.2097805-CDS-Ecto-sp13_S_contig859:12164..122961681464130.2097805-CDS-Ecto-sp13_S_contig859:12164..12296Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig859 12165..12296 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig859.20003.1

>prot_Ecto-sp13_S_contig859.20003.1 ID=prot_Ecto-sp13_S_contig859.20003.1|Name=mRNA_Ecto-sp13_S_contig859.20003.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=414bp
MDFLANIGIPGTEFSTGIGSLIEKATSESLVNTDWALNMQICDEINHQGD
GPSHAAKALKRRLKSDNPKILELTLTLCETTMKNCSRPLHRALGSREFLA
EVAGLCSGQKGYEVRSRALGLIQDWGIAFQSDRSLAYSETYGRLKAQGAR
FPEGTDAATTAFTPAAASYGASSSSSAAMAGSGGGGGGGGGGGVRSAPEA
PPQTMEKLEEDLQMVKDKITLCREMLPESAGVDKDPALSEVVGFLEACRP
RMVDLVEAGVGGALGEDTFAKCLQINDALLRTLDAEREGTPIAVEDDTSG
GAAPLLDLDGGSEDPLKGKMSTFSIGDDGDDFAELRKGKPPAAAGKGARG
SVTKLGAVPLKTPAAEPPKATPAGDDDLDDFLNSLTDDAGPAAAAAGAAD
DKLDVEELDKVLG*
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mRNA from alignment at Ecto-sp13_S_contig859:6635..12296-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig859.20003.1 ID=mRNA_Ecto-sp13_S_contig859.20003.1|Name=mRNA_Ecto-sp13_S_contig859.20003.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5662bp|location=Sequence derived from alignment at Ecto-sp13_S_contig859:6635..12296- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATTTCTTGGCGAACATCGGCATCCCTGGCACCGAATTCAGTACAGG GATAGGGTCGCTGATCGAAAAAGCCACTTCCGAGTCCCTCGTCAACACGG ACTGGGCTTTGAACATGCAAATTTGCGATGAGGTGAGTATGTACGGCATT CTCGTTCCTCCATACGATAGGTACTGTCGTAGGTTGCGTGTGGTGTGTTT TTAGGAAATGGTTCATCTGCTTATTCCTCCGACTCTTTTCCGCAAGTTGA ACATCACAAACGATCTTCCGAATTCCGGTTCAACACTACCTACCACGCAG TACAGCTCCTCCTCACTTTTGCACGGCAAGGCTGGGCAGGAGTGCTGTGC TCGCAGTTGTGCAACAGAAGGGCTTAATTTAACCATGTAGAGGCATTTGC CTTGTGATGTCTGCTCTTGATTGTTGTTGCACGATCAGATCAACCATCAG GGAGATGGACCGAGTCATGCCGCTAAGGCTCTGAAGCGCCGTCTCAAGAG CGACAACCCGAAAATTCTTGAGCTGACGCTCACTCTGTGCGAGACGACCA TGAAGAACTGCTCCAGACCGCTTCACCGAGCTCTCGGCTCAAGAGAATTT CTGGCAGAGGTCGCAGGGCTCTGCAGCGGACAGAAGGGATATGAGGTACA CATATAGTATTCAACTGGATGCACCCGTGCACGCAGCAGGGCAGCATCTT CTCTCTGTCGCCGCTATTCCGCCGTTTCAGCACTGTATGCATAGGACAAA GTGTAGATGTGACGCTTCTGCTGGGGGCTATGAGCGAACTGCTGAGGGTT GTTCGAAATATGGACATGTCGATTATGTGCCACATGACATGTATAGCGAT AGCGCTGTCCTCTGCCGGAATACTCTTCGTGCCGACAGATGTATCAGAGA AGAAGATAAGAGTCGATAGCTGTAACATAAGGAGCAGGACATGCTCGTGC TGTTTTTTTTTATGGGCAGACTTCGTGCATACTACACTGCACAGCGTGGT ATGCACACACTTATTGTTCGCTGTGCCGGTTGTTACGATCGTCGAGTACT GTTGAGTATTTGTTGATTCTCCACCTCGCGTCCTCTCTGCTGCATCCTGC AACCTGCAAGCCTTGAAAAGACGTCACGTCATGTTTGGCCCACCTCTCTA TTCGTCGTCGGCACTCTAAACTATCTCGCATCAGGTGCGTTCTCGTGCTC TTGGCCTTATTCAAGACTGGGGAATCGCTTTCCAATCGGACAGGAGCCTC GCCTACTCGGAAACATACGGCCGGTGAGCAAGGAACCACCCCCAGCGGCC TGACCCTTGTGTGCATGGTATCCTCCGTAATGAGCCACACCTTGCCTGCA CAGCAGCACAGTATCATCGTACCATCATCGCGGAGCAGCCTCTTGAGGTG CGCTGCTGTTGCTGTGCGTCAGCTTTCAAGCAGAATCTGTGTGCATATCT GTGTCAACTTCGTTCAGCGCGGTACAGTTGTGTTCCAATAGAAAAGATGA GATTCCCCAAGCAATGACTGAAAGCTTGGCTGCGGTGCACGTGTTCGTTG AGCGCCGCGCGGGCGGTGCGGCAGAGAGCACAGCGCCGGCCGCGCTCCCG AATCACAGCTATTACCTGCAAGCTGACATGAGAGCACATCGAAAGAAATC GACCTACAGGAGATCGTCGTGCCCTCGCTTCTAATATGTGTGTGTGTGTT TGTCCCATTTTTTGTAACGCCGGTTAATAGGCCTTTCGGCGTATGTTTCT GACGCATCAGCGGGGATCACACTTAGAGGAAGGTCACACAGGAGCTTTTT CATTTTTGTTGTTTGATTACCCCACCTTCCCCCCTGCGGTGCTTGCCTTA ATTCTTGTCGCAAGGAGGGTTCTACGTGCGCGAAAAATCTCAATCGATAT GACATGACGTGACATCTCTCTCCTCTCCCCGTGACCATAGCCCATATTTT TATATTTTACCACGTTACCTTGTCGACTTGGTGCGGTACTGTATGCATGT ATCCTCCTGTGGTGATGGGCAGCTTGAAGGCCCAGGGTGCTCGTTTCCCA GAGGGAACAGACGCAGCAACCACAGCCTTCACGCCTGCGGCGGCGTCATA CGGTGCTTCATCCTCCTCGTCCGCAGCTATGGCGGGCAGTGGTGGCGGAG GTGGCGGTGGCGGGGGGGGAGGAGTGAGGAGTGCACCCGAAGCGCCCCCC CAAACGATGGAGAAGCTAGAAGAAGATCTCCAGGTGCCTCCTACTCCTAC ACCCGTTTTGTGCGTTTGGGTTGTTGGCCCCTGTTTTTCTGCACTCGGGT CGGTTTAGGTTTTTGTGTATGTACGTGTACCATTGCTCCTGTTTTCGTGC TTCGGGATATTTTGCGCTGGCAGAAGCCAGTCTTTTCTCACGCTTCCTTC AGAGGGGCACGCCGGGGGATCATCCGTACATTTCCGCGCACGCCCGAGGA CCATCCGTCACCCATGGCGCTTGCGCGTGACTCCCACAGTTGAAATATCT GGCTCTATACCCCGGGGACGTGATCCGCGCGAAGAAAGCCTACGCAAGAA ATACAAAAAGTGCTTCGCATAAAGCAGGAAGACTTTATTTTGATTCCCAC GCAACGCACACCAGTCCCACAGACTATGGGCAACACGAATACATAAGAGC GAGCGATCAAACGCAGCGGATTACAGCAGTAGGACCTGCAGGAAAGACGC CACTACAAGTCACCAAAAAGCACACACATGCGCACACGCGAAGAATCACG GCGAGAAAAAAAAACACCCCGCATATGATGATGGAAAATTCCAGGCAAAT TCTGCAGGCTGTAGTATGCGCAAACCGACACTCGCTAGCGAATGTCATGA CGCTGAGTGCAACGATGCGGCCGCGATGACATTGATCATGTCCTCTTGTG TCGCCCCAGGGGGGGCAAGCCACCTTGACTACCTCGCGAAGAGACTTCTA CCAGTTGGATACGGTTGTGAGGTGACGAAACTCCGCGCCGTGCCTAGTTA TCGTTGAGAATGCCCTTCTGGTCTGGGGTGACAGGTACAGCTGTGCACTC GAGCTAAGGCACTCGCTGGCGATTCGGCTATTAATAGCTATGACAGCTCT TGAGTTCCCCGAGCATGAGTCTGGTCGCCCCTACTACTGTACCTCACAAA ATATTTCCAATCGTTTCTGCAGCATGTCGACCTGTCTGTGAGGCGAAGAA AATATTTGTTTCTATGCATACCTGTGAACTGTACACTGCTGTGAACACAC GAGCTGTTAGCGCAGTGCCACTATTTATTGGTGTCTTTATAGACGCAGAG GTTGTGCATCGACAGACACCAGGTTCTATGAGGTTTGCACGATGTCATCT CTCTCTCTCCCAGAACACCACGTGTGCGAGACCGAGACAGTCTTTCCATG AGGTCTCGACGCAACACGCCCCGGTTTCATCCTCTTTGTAACACACTCGT GGGACCGATTGTCTCAATGTATCTTCCACATGGCTCCGGGGTTTCAACGC TGTTTTGCTTGTTGTTTTTTGCTCCACGATTGTATGGTTCGACGATGCGG CACCATGGTCCGTTGTCATTCGGCAGATGGTGAAGGACAAGATCACCTTG TGCCGTGAGATGCTCCCCGAGTCGGCTGGCGTAGACAAGGACCCGGCTCT GTCAGAGGTGGTCGGGTTCCTCGAGGCATGCCGACCGAGGATGGTTGATC TTGTAGAGGCCGGGGTGGGCGGCGCGCTTGGAGAGGACACCTTCGCCAAG TGTCTACAGGTACAGCACAATACAAAACAAAATAATACAATACAATGCAA TCAATACTGCAGTACTGCATGTTCGATGCGCGCACGTACATGTGGGGTGC ACAAATAAGTGTTGAGGAAGAGGGAGTACAGTACAGTAGTTTCTCGGCGA GCGGCTTGCTTCGTGTGCTTTTCTATTCTACTGATGCCGGATAATGTTCT TCGGCAGTGCACTGTACGTGGGTGTAACGTCTGTTCGTTTGCATGGCCGG CTGATGGTGTCGTGGGTGCAACACAAAAACGCGTTTTCGCCGGAGGAAAG GGCAACGTTCCGCAAAGGTTTTCCTCTCCTCGGTACATATTTCGTCGACT CTTTGAGGCATGTCTCAAACGTTAATGGGATGATGGTGTACGAAAATCAA TTGGCTCTCAAGACTGCTAAATCGGTGGAGAAACGTAACGCGGAGGCATC GGTACCGGCCTGAGAACAGCTGGATCCCTATTCCTGCGCGCGTATACCGC CATCAACACGTAACACACATATTTGCTTCGACTGCACTTAACACTCTACT CTACTCCGCTGTCAGATCAACGACGCGCTGCTCCGCACGCTAGACGCCGA GCGCGAGGGTACTCCTATCGCGGTGGAGGATGATACCTCGGGTGGAGCGG CCCCACTGCTAGACCTCGATGGTGGCAGCGAGGACCCCCTCAAGGGGAAG GTGAGTTGGAGGTCTTGTGAATGACCTTTGCGGTATGGCACTGCTCCTCT TCATGTTGCACATTTGTTTGGACATGGTCAGAGTTAGAGCTCACCCTGCG AAGTGCCGGCCGTTGTTCACGTTCCCCGTTGTCGACGGAAAGCTCAAGCT GTGCACCTTGTTGTTGATGATCTTGCCTACAATTCAGATTGACAATTCAG ATTGACATCGGTCAAGAATGAAGTATCGAACACTATAATTTGTGATATTG CAATGTGAGGGGGTACACGCAAGATACAAATCGTTTCCATTACTTGATAG AAACAACTTGGTCTCTGACGAGCTGCCACAACCTTGCGCCGCACGTCACG TCTCGCTGTATGCTGCTGCTGCTGCGATGTAGATGTCAACCTTCTCAATC GGCGATGACGGTGACGATTTCGCTGAGTTGCGGAAAGGCAAACCTCCCGC GGCTGCGGGGAAGGGCGCACGTGGCAGCGTGACCAAACTAGGAGCTGTCC CACTCAAAACACCAGCCGCAGAACCTCCCAAAGGTAATGTTGGATGTGAC GTTTTGCCGACAGTCTCTGCGTAATACCCACGCCAGGTAGCACCTACCCA TATAGTCCACATCGACGTTGGGTTTTCAACTGCTATGACACAGCAGTGCA CCACTCTCTCTCTGCGGATGCGCATCGCTGCGATACATGCTGTAGCGTTC AGATTTTCACCAGAGGGTAATGTAGTTACAGTAGTGTTGCCGCGTAACAT CTATGGATCGGTTTCGCAGCTAGACAGAGGGTGCGCTGTCCCTGTGGAGT AATGGAGTTGGCACTTGGTGCTGAGAATGAGAATGAGAATGAGAATGGGA AATACGGCGTGGCACGCACTTGTTTTACAATCATTCGGTTCTCCCCCTGT GTCCAAATTTCTGCCACGTTCCCCTCCTCCTCATATGTACTGGTTGAATT GGCTTGCTGCGCTGATTCCCTTGCCTTGTCCATCTTCACACGTTGACGAG TTACCCTGTTTTCCCTACCGCTGTTGTATGTCGTTTTTCAATGCTGTGCT ATGTATGGGTGTGCAACGACCGCGGCAGCCACTCCTGCTGGTGACGACGA CCTGGACGACTTTTTGAACAGCCTCACAGACGATGCGGGACCTGCAGCAG CAGCAGCAGGGGCGGCGGATGACAAGCTAGACGTCGAAGAGTTGGACAAG GTGTTGGGCTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig859:6635..12296-

>mRNA_Ecto-sp13_S_contig859.20003.1 ID=mRNA_Ecto-sp13_S_contig859.20003.1|Name=mRNA_Ecto-sp13_S_contig859.20003.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1242bp|location=Sequence derived from alignment at Ecto-sp13_S_contig859:6635..12296- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGATTTCTTGGCGAACATCGGCATCCCTGGCACCGAATTCAGTACAGG
GATAGGGTCGCTGATCGAAAAAGCCACTTCCGAGTCCCTCGTCAACACGG
ACTGGGCTTTGAACATGCAAATTTGCGATGAGATCAACCATCAGGGAGAT
GGACCGAGTCATGCCGCTAAGGCTCTGAAGCGCCGTCTCAAGAGCGACAA
CCCGAAAATTCTTGAGCTGACGCTCACTCTGTGCGAGACGACCATGAAGA
ACTGCTCCAGACCGCTTCACCGAGCTCTCGGCTCAAGAGAATTTCTGGCA
GAGGTCGCAGGGCTCTGCAGCGGACAGAAGGGATATGAGGTGCGTTCTCG
TGCTCTTGGCCTTATTCAAGACTGGGGAATCGCTTTCCAATCGGACAGGA
GCCTCGCCTACTCGGAAACATACGGCCGCTTGAAGGCCCAGGGTGCTCGT
TTCCCAGAGGGAACAGACGCAGCAACCACAGCCTTCACGCCTGCGGCGGC
GTCATACGGTGCTTCATCCTCCTCGTCCGCAGCTATGGCGGGCAGTGGTG
GCGGAGGTGGCGGTGGCGGGGGGGGAGGAGTGAGGAGTGCACCCGAAGCG
CCCCCCCAAACGATGGAGAAGCTAGAAGAAGATCTCCAGATGGTGAAGGA
CAAGATCACCTTGTGCCGTGAGATGCTCCCCGAGTCGGCTGGCGTAGACA
AGGACCCGGCTCTGTCAGAGGTGGTCGGGTTCCTCGAGGCATGCCGACCG
AGGATGGTTGATCTTGTAGAGGCCGGGGTGGGCGGCGCGCTTGGAGAGGA
CACCTTCGCCAAGTGTCTACAGATCAACGACGCGCTGCTCCGCACGCTAG
ACGCCGAGCGCGAGGGTACTCCTATCGCGGTGGAGGATGATACCTCGGGT
GGAGCGGCCCCACTGCTAGACCTCGATGGTGGCAGCGAGGACCCCCTCAA
GGGGAAGATGTCAACCTTCTCAATCGGCGATGACGGTGACGATTTCGCTG
AGTTGCGGAAAGGCAAACCTCCCGCGGCTGCGGGGAAGGGCGCACGTGGC
AGCGTGACCAAACTAGGAGCTGTCCCACTCAAAACACCAGCCGCAGAACC
TCCCAAAGCCACTCCTGCTGGTGACGACGACCTGGACGACTTTTTGAACA
GCCTCACAGACGATGCGGGACCTGCAGCAGCAGCAGCAGGGGCGGCGGAT
GACAAGCTAGACGTCGAAGAGTTGGACAAGGTGTTGGGCTGA
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