mRNA_Ecto-sp13_S_contig859.20003.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig859.20003.1 vs. uniprot
Match: D7G5B8_ECTSI (VHS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5B8_ECTSI) HSP 1 Score: 723 bits (1867), Expect = 9.440e-262 Identity = 403/418 (96.41%), Postives = 406/418 (97.13%), Query Frame = 1
Query: 1 MDFLANIGIPGTEFSTGIGSLIEKATSESLVNTDWALNMQICDEINHQGDGPSHAAKALKRRLKSDNPKILELTLTLCETTMKNCSRPLHRALGSREFLAEVAGLCSGQKGYEVRSRALGLIQDWGIAFQSDRSLAYSETYGRLKAQGARFPEGTDAATTAFTPAAASYGAXXXXXXXXXXXXXXXXXXXXXX-----VRSAPEAPPQTMEKLEEDLQMVKDKITLCREMLPESAGVDKDPALSEVVGFLEACRPRMVDLVEAGVGGALGEDTFAKCLQINDALLRTLDAEREGTPIAVEDDTSGGAAPLLDLDGGSEDPLKGKMSTFSIGDDGDDFAELRKGKPPAAAGKGARGSVTKLGAVPLKTPAAEPPKATPAGDDDLDDFLNSLTDDAGPAAAAAGAADDKLDVEELDKVLG 1239
MDFLANIGIPGTEF+TGIGSLIEKATSESLVNTDWALNMQICDEINHQGDGPSHAAKALKRRLKSDNPKIL LTLTLCETTMKNCSRPLHRALG+REFLAEVAGLC+GQKGYEVRSRALGLIQDWGIAFQSDRSLAYSETYGRLKAQGARFPE TDAATTAFTPAAASYGAXXXXXXXXXXXXXXXXXXXXXX VRSA EAPPQTMEKLEEDLQMVKDKITLCREMLPESAGVDKD ALSEVVGFLEACRPRMVDLVEAGVGGALGEDTFAKCLQINDALLRTLDAEREGTPIAVEDD SGGAAPLLDLDGGSEDPLKGKMSTFSIGDDGDDFAELRKGKPPAAAGKGA GSVTKLGAVPLKTPAAEPPKATPAGDDDLDDFLNSLTDDAGPAAAA GAADDKLDVEELDKVLG
Sbjct: 1 MDFLANIGIPGTEFTTGIGSLIEKATSESLVNTDWALNMQICDEINHQGDGPSHAAKALKRRLKSDNPKILGLTLTLCETTMKNCSRPLHRALGAREFLAEVAGLCNGQKGYEVRSRALGLIQDWGIAFQSDRSLAYSETYGRLKAQGARFPEATDAATTAFTPAAASYGAXXXXXXXXXXXXXXXXXXXXXXXXXXXVRSAAEAPPQTMEKLEEDLQMVKDKITLCREMLPESAGVDKDTALSEVVGFLEACRPRMVDLVEAGVGGALGEDTFAKCLQINDALLRTLDAEREGTPIAVEDDISGGAAPLLDLDGGSEDPLKGKMSTFSIGDDGDDFAELRKGKPPAAAGKGASGSVTKLGAVPLKTPAAEPPKATPAGDDDLDDFLNSLTDDAGPAAAA-GAADDKLDVEELDKVLG 417
BLAST of mRNA_Ecto-sp13_S_contig859.20003.1 vs. uniprot
Match: A0A6H5L7N0_9PHAE (VHS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7N0_9PHAE) HSP 1 Score: 357 bits (915), Expect = 4.720e-120 Identity = 206/214 (96.26%), Postives = 210/214 (98.13%), Query Frame = 1
Query: 1 MDFLANIGIPGTEFSTGIGSLIEKATSESLVNTDWALNMQICDEINHQGDGPSHAAKALKRRLKSDNPKILELTLTLCETTMKNCSRPLHRALGSREFLAEVAGLCSGQKGYEVRSRALGLIQDWGIAFQSDRSLAYSETYGRLKAQGARFPEGTDAATTAFTPAAASYGAXXXXXXXXXXXXXXXXXXXXXXVRSAPEAPPQTMEKLEEDLQM 642
MDFLANIGIPGTEF+TGIGSLIEKATSESLVNTDWALNMQICDEINHQGDGPSHAAKALKRRLKSDNPKILELTLTLCETTMKNCSRPLHRALG+REFLAEVAGLC+GQKGYEVRSRALGLIQDWGIAFQSDRSLAYSETYGRLKAQGARFPE TDAATTAFTPAAASYG XXXXXXXXXXXXXXXXXXXXX VRSA EAPPQTMEKLEEDLQ+
Sbjct: 1 MDFLANIGIPGTEFTTGIGSLIEKATSESLVNTDWALNMQICDEINHQGDGPSHAAKALKRRLKSDNPKILELTLTLCETTMKNCSRPLHRALGAREFLAEVAGLCNGQKGYEVRSRALGLIQDWGIAFQSDRSLAYSETYGRLKAQGARFPEATDAATTAFTPAAASYGXXXXXXXXXXXXXXXXXXXXXX-VRSAAEAPPQTMEKLEEDLQV 213
BLAST of mRNA_Ecto-sp13_S_contig859.20003.1 vs. uniprot
Match: A0A7S2GD13_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2GD13_9STRA) HSP 1 Score: 236 bits (602), Expect = 4.360e-72 Identity = 130/287 (45.30%), Postives = 177/287 (61.67%), Query Frame = 1
Query: 43 STGIGSLIEKATSESLVNTDWALNMQICDEINHQGDGPSHAAKALKRRLKSDNPKILELTLTLCETTMKNCSRPLHRALGSREFLAEVAGLCSGQKGYEVRSRALGLIQDWGIAFQSDRS---LAYSETYGRLKAQGARFPEGTDAATTAFTPAAASYGAXXXXXXXXXXXXXXXXXXXXXXVRSAPEAPPQTMEKLEEDLQMVKDKITLCREMLPESAGVDKDPALSEVVGFLEACRPRMVDLVEAGVGGALGEDTFAKCLQINDALLRTLDAEREGTPIAVEDDT 894
S+ I I KAT L+NTDW+ N++ICD IN DG A++ L+RRLK+DN ++L LTL L + +KNCS +H A+ S+EF+ +V L G++G+EVR +AL LIQ W I F+ DRS + ++ETY +LK +G FP+ A +S A P P KL +DL +V +KI LCREMLPES+G++ D AL+EVVGFLEAC+PRMVDL+E G+ G LGED ++ LQ+ND LL+TL+AE+ GTP+ VE T
Sbjct: 5 SSPISDAISKATDSMLMNTDWSANLEICDLINSSPDGSVTASQTLRRRLKNDNMRVLTLTLELTDACIKNCSSDMHSAVASKEFMGDVVALTDGKQGWEVREQALKLIQAWAIEFK-DRSGPFVVFTETYVQLKTKGVTFPDPEHTAPVFMEEPPSSQAAE-------------------------PVEPTDPTMKLAQDLSVVAEKIKLCREMLPESSGIETDDALAEVVGFLEACKPRMVDLIECGMQGMLGEDLVSQTLQVNDDLLKTLEAEKNGTPLPVETKT 265
BLAST of mRNA_Ecto-sp13_S_contig859.20003.1 vs. uniprot
Match: A0A835Z2K5_9STRA (VHS domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z2K5_9STRA) HSP 1 Score: 236 bits (602), Expect = 1.110e-69 Identity = 150/304 (49.34%), Postives = 197/304 (64.80%), Query Frame = 1
Query: 37 EFSTGIGSLIEKATSESLVNTDWALNMQICDEINHQGDGPSHAAKALKRRLKSDNPKILELTLTLCETTMKNCSRPLHRALGSREFLAEVAGLCSGQKGYEVRSRALGLIQDWGIAFQSDRSLAYSETYGRLKAQGARFPEGTDAATTAFTPAAASYGAXXXXXXXXXXXXXXXXXXXXXXVRSAPEAPPQTMEKLEEDLQMVKDKITLCREMLPESAGVDKDPALSEVVGFLEACRPRMVDLVEAGVGGALGEDTFAKCLQINDALLRTLDAEREGTPIAVEDDTSGGAAPLLDLDGGSEDPL 948
EFST +G ++ AT+E+LV DW+LNM + D I+ +GP +AAKAL+RRLKS+N K++ LTLTLC+ +KNC PLH ALG+REFL V + G+ G +V+ +AL L+Q WG AF L YS Y R++ QGA FP + F P A+ XXXXXXXXXXXXXXXXX P Q + KL+ DL V++K+ LC+++L E+ G++ D L E++GFLEACRPR+ +L++AG+ G L D CL+INDALLRTL AER+GT I VE G DL GSED L
Sbjct: 42 EFSTYVGEMVMHATAETLVAADWSLNMGVADTIDATVEGPQNAAKALQRRLKSENAKVVSLTLTLCDVCVKNCRPPLHAALGTREFLGHVEDVAGGRLGPQVQQQALELVQQWGEAFAGSPHLYYSSLYTRMREQGAAFPPRPEGDAPLFLPPRAAPAXXXXXXXXXXXXXXXXXX------------PAQELVKLKLDLVCVQEKLELCQQVLQETPGIEHDDVLRELIGFLEACRPRLHELIQAGIIGHLEPDVLEGCLKINDALLRTLAAERDGTKIGVESIDLG----FGDLQPGSEDEL 329
BLAST of mRNA_Ecto-sp13_S_contig859.20003.1 vs. uniprot
Match: A0A7S2W1F0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2W1F0_9STRA) HSP 1 Score: 204 bits (519), Expect = 5.360e-57 Identity = 125/314 (39.81%), Postives = 170/314 (54.14%), Query Frame = 1
Query: 1 MDFLANIGIPGTEFSTGIGSLIEKATSESLVNTDWALNMQICDEINHQGDGP-SHAAKALKRRLKSDNPKILELTLTLCETTMKNCSRPLHRALGSREFLAEVAGLCSGQKGYEVRSRALGLIQDWGIAFQSDRSL--AYSETYGRLKAQGARFPEGTDAA-------------------TTAFTPAAASYGAXXXXXXXXXXXXXXXXXXXXXXVRSAPEAPPQTMEKLEEDLQMVKDKITLCREMLPESAGVDKDPALSEVVGFLEACRPRMVDLVEAGVGGALGEDTFAKCLQINDALLRTLDAEREGTPI 876
MDF T + + IE+AT L+ TDW N++ICD IN G + A + L+R+L+SD PK + L L L + +KNC+ LHRA+ S+ F+ +V L G+KG+E + +L LIQ+WG F++ RS + +TY LK +GA FPE +A +A PAAAS G S M+KL +DL V++KI LCREMLPES G++ D ALSEVVGFLEAC+PR+ DL+EAG+ L ED + L + D L +TL+AER GTPI
Sbjct: 1 MDFFRFDSNSPTNDGSPVAQAIERATDPMLLTTDWGKNLEICDMINTGGQAAVTSATRMLRRQLRSDQPKTVMLALELTDACVKNCAFELHRAVASKAFMGDVVALAEGKKGFEPQELSLKLIQEWGKEFKATRSELPGFFDTYVGLKTKGAAFPESESSAPVFSPPPQITAEEPPQTGHASASAPAAASSGPGPSALPGASPGQPAPSPTGGPGEAS--------MDKLRQDLVAVEEKIKLCREMLPESPGIEHDEALSEVVGFLEACQPRLSDLIEAGMQDILSEDILSYTLHVFDELQKTLEAERTGTPI 306
BLAST of mRNA_Ecto-sp13_S_contig859.20003.1 vs. uniprot
Match: A0A812V5W7_SYMMI (TOL1 protein n=1 Tax=Symbiodinium microadriaticum TaxID=2951 RepID=A0A812V5W7_SYMMI) HSP 1 Score: 192 bits (489), Expect = 3.230e-55 Identity = 116/289 (40.14%), Postives = 159/289 (55.02%), Query Frame = 1
Query: 1 MDFLANIGIPGTEFSTGIGSLIEKATSESLVNTDWALNMQICDEINHQGDGPSHAAKALKRRLKSDNPKILELTLTLCETTMKNCSRPLHRALGSREFLAEVAGLCSGQKGYEVRSRALGLIQDWGIAFQSDRSLA--YSETYGRLKAQGARFPEGTDAATTAFTPAAASYGAXXXXXXXXXXXXXXXXXXXXXXVRSAPEAPPQTMEKLEEDLQMVKDKITLCREMLPESAGVDKDPALSEVVGFLEACRPRMVDLVEAGVGGALGEDTFAKCLQINDALLRTLDAER 861
MDF P E ST IG L++ T L+ DWA N++ICD IN +G + A KA+ +LKS +PK++ L LT+ ET KNC +R F+ E+ + +G+KG++ + AL +IQ WG++++ R+ + ETY LK +G RFPE D T+ V A KL DL +V +KI LCREMLPES G+ +D L+EVVGFLEAC+ RM+DL+E G G L ED F CL++NDALLRTL+AE+
Sbjct: 1 MDFFGFSDAP--ELSTRIGVLVKSGTDPLLLGPDWAKNIEICDHINSHNNG-ADAVKAILHQLKSSDPKVVALALTMIETCTKNCVSVPQNI--NRSFMDEMVNISTGRKGFDNQEDALKMIQMWGLSYERRRNELPLFFETYMTLKTRGIRFPEPEDQPTS---------------PQSRGNSDSACAHPLSRSVDMAAGNQSDDSTKLRNDLGVVMEKIRLCREMLPESPGIQQDEILAEVVGFLEACQERMIDLIETGTQGLLAEDVFELCLRVNDALLRTLEAEK 269
BLAST of mRNA_Ecto-sp13_S_contig859.20003.1 vs. uniprot
Match: F0YK31_AURAN (VHS domain-containing protein n=2 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YK31_AURAN) HSP 1 Score: 183 bits (465), Expect = 7.500e-51 Identity = 100/268 (37.31%), Postives = 150/268 (55.97%), Query Frame = 1
Query: 61 LIEKATSESLVN-TDWALNMQICDEINHQGDGPSHAAKALKRRLKSDNPKILELTLTLCETTMKNCSRPLHRALGSREFLAEVAGLCSGQKGYEVRSRALGLIQDWGIAFQSDRSL-AYSETYGRLKAQGARFPEGTDAATTAFTPAAASYGAXXXXXXXXXXXXXXXXXXXXXXVRSAPEAPPQTMEKLEEDLQMVKDKITLCREMLPESAGVDKDPALSEVVGFLEACRPRMVDLVEAGVGGALGEDTFAKCLQINDALLRTLDAE 858
L+E ATS+ + D+ +N++ICD + A A+K+RL ++ + L+LTL E +KNC +H A+G ++ L+E+A LC G G EV+ +AL L+Q WG+AF+S +L A+++TY LK +G FP G + FTP + + K+ D+++V +KI LC+EM+P S G+D D AL+EVVGFLEACRPR+ LVE+G+ GA G++T CL++ND L L E
Sbjct: 4 LVESATSDVRMGLVDFGVNLEICDALERNPSDAVTMAFAVKKRLGKNDAHVTALSLTLLEMCVKNCGEAVHAAVGQQQILSEIAKLCEGGSGEEVKRQALALVQQWGVAFESRDALPAFADTYTALKVKGFEFPTGNEENAPVFTP------------PRQDGTVVQDDAVYAAALADGSLDRANALAKVRADVEIVAEKIRLCKEMVPNSPGIDHDDALAEVVGFLEACRPRLAILVESGLSGAFGDETLTSCLKVNDDLHEALQGE 259
BLAST of mRNA_Ecto-sp13_S_contig859.20003.1 vs. uniprot
Match: A0A4D9D0H1_9STRA (VHS domain-containing protein n=2 Tax=Monodopsidaceae TaxID=425072 RepID=A0A4D9D0H1_9STRA) HSP 1 Score: 178 bits (452), Expect = 5.310e-48 Identity = 108/298 (36.24%), Postives = 169/298 (56.71%), Query Frame = 1
Query: 34 TEFSTGIGSLIEKATSESLVNTDWALNMQICDEINHQGD-GPSHAAKALKRRLKSDNPKILELTLTLCETTMKNCSRP-----LHRALGSREFLAEVAGLCSGQKGYEVRSRALGLIQDWGIAFQSDR-SLAYSETYGRLKAQGARFPEGTDAATTAFTPAAASYGAXXXXXXXXXXXXXXXXXXXXXXV---RSAPEAPPQT------MEKLEEDLQMVKDKITLCREMLPESAGVDK-DPALSEVVGFLEACRPRMVDLVEAGVGGA-----LGEDTFAKCLQINDALLRTLDAER 861
++ T +G LI+ ATSE+LV DW+LN+ +CD +N + A +A +R+L+ NPK+L+LTLTL ET +KN +P H +GS +FLA+++ L G++G+EV+ +AL L+Q WG++F+S R +LA+ TY L+ QG +FP +A++ FTP A A S P A P+ + KL++DL V+++ C ML S G++ D AL+E VGFLEAC+ R+ +++EAG+GG L E L++++ ++ L AER
Sbjct: 14 SDLLTPVGRLIDDATSETLVTPDWSLNLAVCDAVNSDDEFAGEQAMRAFRRKLREANPKVLQLTLTLLETVIKNADQPGRESRFHALVGSPDFLAKISSLTDGKRGWEVKEQALALLQQWGLSFESRRDTLAFYSTYMDLRLQGVQFPR-LEASSPIFTPPAQPSPATLPASTTPTSEGVFNAETTEIDKGVPASLPSAAPRARTADRDLTKLQQDLGEVRERARACFAMLSHSEGIESGDEALAEAVGFLEACKERLTEVIEAGMGGGEESITLTEAVLELALEVHEEVVEVLGAER 310
BLAST of mRNA_Ecto-sp13_S_contig859.20003.1 vs. uniprot
Match: A0A3M6VCH0_9STRA (VHS domain-containing protein n=1 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VCH0_9STRA) HSP 1 Score: 154 bits (390), Expect = 5.710e-40 Identity = 96/267 (35.96%), Postives = 142/267 (53.18%), Query Frame = 1
Query: 52 IGSLIEKATSESLVNTDWALNMQICDEINHQGDGPSHAAKALKRRLKSDNPKILELTLTLCETTMKNCSRPLHRALGSREFLAEVAGLCSGQKGYEVRSRALGLIQDWGIAFQSDRSLAYSETYGRLKAQGARFPEGTDAATTAFTPAAASYGAXXXXXXXXXXXXXXXXXXXXXXVRSAPEAPPQTMEKLEEDLQMVKDKITLCREMLPESAGVDKDPALSEVVGFLEACRPRMVDLVEAGVGGALGEDTFAKCLQINDALLRTLD 852
+ L+ +AT E+LV +WALNM+ICD N + L+ RL+S PK+ LTL L ET +KN R LH +GS FL EVA G G +V+++AL LI+ W AF+ A+ + Y +LK QG FPE + FTP +++ A + +EKL++DL++V+ KI L R+M + G + L +V+ FL C+PRM L+E GV G + E T +CL +ND+L++TL+
Sbjct: 11 VEELVARATDEALVEPEWALNMEICDCANANPTVCDDIVRLLQCRLQSGEPKVTLLTLILTETVVKNGPRALHSQVGSTFFLKEVAAFSDGSLGIDVQNQALLLIRQWADAFKGSELQAFEDIYRQLKMQGVSFPE-VENDVPIFTPPSSTASAFAATGQDESYPAVVSERCTRK----------KQLEKLQDDLKLVQQKIKLLRDM--HTCGQTGEQ-LEDVLDFLRQCQPRMNTLIEGGVMGKIDEHTLEQCLNVNDSLMKTLE 263
BLAST of mRNA_Ecto-sp13_S_contig859.20003.1 vs. uniprot
Match: M4C0L4_HYAAE (VHS domain-containing protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4C0L4_HYAAE) HSP 1 Score: 136 bits (342), Expect = 4.940e-33 Identity = 86/264 (32.58%), Postives = 134/264 (50.76%), Query Frame = 1
Query: 61 LIEKATSESLVNTDWALNMQICDEINHQGDGPSHAAKALKRRLKSDNPKILELTLTLCETTMKNCSRPLHRALGSREFLAEVAGLCSGQKGYEVRSRALGLIQDWGIAFQSDRSLA-YSETYGRLKAQGARFPEGTDAATTAFTPAAASYGAXXXXXXXXXXXXXXXXXXXXXXVRSAPEAPPQTMEKLEEDLQMVKDKITLCREMLPESAGVDKDPALSEVVGFLEACRPRMVDLVEAGVGGALGEDTFAKCLQINDALLRTL 849
L+++AT E+LV +WALNM +CD +N + LK+RL+ PK+ L L L ET +KN + LH +G++ FL E+ L G G +V++RAL LI+ W AFQ L + + Y +L+ Q FPE + FTP ++ A Q +EKL+ DL +V++K+ L R++ A ++ + + + FL C+ RM L+E GV G + E T +CL +ND L++ L
Sbjct: 8 LVDRATDETLVEPEWALNMSLCDCVNAHHEVCEDVVHFLKQRLQLRQPKVALLALILTETLVKNGPQVLHTQVGTQWFLQEIVALVDGSLGVDVQTRALLLIRQWAEAFQGQSELTEFQDVYQQLQKQNITFPEVKNDVPI-FTPPSSMSSACAVSEGDESAAAGATLGRRTRA---------QQLEKLQADLVVVQEKMKLLRDL---HARGQQEEEMEDALDFLRQCQQRMNTLIEGGVMGKIDEHTLEQCLNVNDGLMKIL 258 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig859.20003.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig859.20003.1 >prot_Ecto-sp13_S_contig859.20003.1 ID=prot_Ecto-sp13_S_contig859.20003.1|Name=mRNA_Ecto-sp13_S_contig859.20003.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=414bp MDFLANIGIPGTEFSTGIGSLIEKATSESLVNTDWALNMQICDEINHQGDback to top mRNA from alignment at Ecto-sp13_S_contig859:6635..12296- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig859.20003.1 ID=mRNA_Ecto-sp13_S_contig859.20003.1|Name=mRNA_Ecto-sp13_S_contig859.20003.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5662bp|location=Sequence derived from alignment at Ecto-sp13_S_contig859:6635..12296- (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig859:6635..12296- >mRNA_Ecto-sp13_S_contig859.20003.1 ID=mRNA_Ecto-sp13_S_contig859.20003.1|Name=mRNA_Ecto-sp13_S_contig859.20003.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1242bp|location=Sequence derived from alignment at Ecto-sp13_S_contig859:6635..12296- (Ectocarpus species13 EcNAP12_S_4_19m)back to top |