mRNA_Ecto-sp13_S_contig8587.19996.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8587.19996.1
Unique NamemRNA_Ecto-sp13_S_contig8587.19996.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8587.19996.1 vs. uniprot
Match: D8LDC8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDC8_ECTSI)

HSP 1 Score: 566 bits (1458), Expect = 4.410e-196
Identity = 306/350 (87.43%), Postives = 315/350 (90.00%), Query Frame = 1 
Query:    1 ASFGSIFDGTDVLLTRAQEALCAENGSADCANGSVGDFMLDISVALIDRLEGVVDFISSLSAVTAPLLVVSANLGTATGVIDTTERAVININNSITSVNAIITGDGPVAELMDGETITNIDGDVLDDIQDGRDALEQATELTESSSLEIAEQLTGNESTITRIKYQLDEVNGNEILGDEDIRNATLTTVLDDVLQPMRDLTVDIYDVQNDDIPEVRENIEVYLDQAVQAVAGIIFLPGVILFLTSLCSGVCQSSKPLYLNMFFVFMTQILFCLVAGVFLAVSKINGDLCDHHMELIEANLPEFNTTVQDVEIVVDFPKVEKILTCSGDAGDVPTDSNNFVDILEIQQVMS 1050
            +SFGSIFDGTDVLLTRAQEALCAENGSADCA+GSVGDFML+ISVALIDRLEGVVDFISSLSAVTAPLLVVSANLGTATGV+DTTE AVININNSITSVNAIITGDGPVAELMDGETI NIDGDVL DIQDGRDALEQATELTESSSLEIAEQLTGNES ITRIKYQLD+V+GNEILGDEDIRNATLTTVLDDVLQPMRDLTVDIYDVQNDDIPEVRENIEVYLDQAVQAVAGIIFLPGVILFLTSLCSGVCQSSK                            INGDLCDHHM LIEANLPEFNTTVQDVEI+VDFPKVEKILTCSGDAGD PTDSNNFVDILEIQQ+ +
Sbjct:  153 SSFGSIFDGTDVLLTRAQEALCAENGSADCADGSVGDFMLEISVALIDRLEGVVDFISSLSAVTAPLLVVSANLGTATGVVDTTEMAVININNSITSVNAIITGDGPVAELMDGETIANIDGDVLHDIQDGRDALEQATELTESSSLEIAEQLTGNESAITRIKYQLDDVHGNEILGDEDIRNATLTTVLDDVLQPMRDLTVDIYDVQNDDIPEVRENIEVYLDQAVQAVAGIIFLPGVILFLTSLCSGVCQSSK----------------------------INGDLCDHHMALIEANLPEFNTTVQDVEILVDFPKVEKILTCSGDAGDTPTDSNNFVDILEIQQIFN 474
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8587.19996.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LDC8_ECTSI4.410e-19687.43Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8587contigEcto-sp13_S_contig8587:929..6770 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size1050
Hectar predicted targeting categoryother localisation
Exons8
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-25_001730.1
Cds size1050
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8587.19996.1prot_Ecto-sp13_S_contig8587.19996.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8587 929..6770 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464129.4854798-CDS-Ecto-sp13_S_contig8587:928..10121681464129.4854798-CDS-Ecto-sp13_S_contig8587:928..1012Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8587 929..1012 +
1681464129.5016906-CDS-Ecto-sp13_S_contig8587:1514..16441681464129.5016906-CDS-Ecto-sp13_S_contig8587:1514..1644Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8587 1515..1644 +
1681464129.5180023-CDS-Ecto-sp13_S_contig8587:2753..29911681464129.5180023-CDS-Ecto-sp13_S_contig8587:2753..2991Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8587 2754..2991 +
1681464129.5286543-CDS-Ecto-sp13_S_contig8587:3487..36101681464129.5286543-CDS-Ecto-sp13_S_contig8587:3487..3610Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8587 3488..3610 +
1681464129.5394313-CDS-Ecto-sp13_S_contig8587:4168..42681681464129.5394313-CDS-Ecto-sp13_S_contig8587:4168..4268Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8587 4169..4268 +
1681464129.5488265-CDS-Ecto-sp13_S_contig8587:5326..54161681464129.5488265-CDS-Ecto-sp13_S_contig8587:5326..5416Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8587 5327..5416 +
1681464129.5681276-CDS-Ecto-sp13_S_contig8587:6037..61961681464129.5681276-CDS-Ecto-sp13_S_contig8587:6037..6196Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8587 6038..6196 +
1681464129.5840874-CDS-Ecto-sp13_S_contig8587:6644..67701681464129.5840874-CDS-Ecto-sp13_S_contig8587:6644..6770Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8587 6645..6770 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8587.19996.1

>prot_Ecto-sp13_S_contig8587.19996.1 ID=prot_Ecto-sp13_S_contig8587.19996.1|Name=mRNA_Ecto-sp13_S_contig8587.19996.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=350bp
ASFGSIFDGTDVLLTRAQEALCAENGSADCANGSVGDFMLDISVALIDRL
EGVVDFISSLSAVTAPLLVVSANLGTATGVIDTTERAVININNSITSVNA
IITGDGPVAELMDGETITNIDGDVLDDIQDGRDALEQATELTESSSLEIA
EQLTGNESTITRIKYQLDEVNGNEILGDEDIRNATLTTVLDDVLQPMRDL
TVDIYDVQNDDIPEVRENIEVYLDQAVQAVAGIIFLPGVILFLTSLCSGV
CQSSKPLYLNMFFVFMTQILFCLVAGVFLAVSKINGDLCDHHMELIEANL
PEFNTTVQDVEIVVDFPKVEKILTCSGDAGDVPTDSNNFVDILEIQQVMS
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mRNA from alignment at Ecto-sp13_S_contig8587:929..6770+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8587.19996.1 ID=mRNA_Ecto-sp13_S_contig8587.19996.1|Name=mRNA_Ecto-sp13_S_contig8587.19996.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5842bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8587:929..6770+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCATCGTTCGGCTCGATCTTCGACGGGACGGACGTCCTTCTCACGCGGGC
ACAGGAGGCTCTCTGCGCGGAGAACGGGAGTGCGGTGAGTCGCCACGACA
AAAAAAAGTCCAAGGCCCCGTCACCGCGAGTCTTCTACACATCTTGCTTC
CCAAAACCGCCAAAAAAACTACAGCGATAGTGCTGACTCTCAAGCTGCTT
CACTGTTAACCCTTTCCTCTTCTTTTTTTTGTGCACTCGTTCTTGTCCGC
TTTGCCTATCGATGTATCGTGCCCTCGCCGACCCTACAGGAGCACGTGTT
GTTGTTTGTATTGAGCATCACCATCCACTTCTCTGCGTGACATCTCCCGC
TGTTCGTCTTCAGCACAACGAACACACACAGTATGTAGACGAGATACATG
CAGTACGAGGGTATGTTGCCTGCTTTGTATCGGTTCCCCAGCGGGGTCTC
ATCTCCATACGAGCCTTCGGTGAGTGTGGCCACACCAACGTGCGCGATTG
AGACCCAGAATCCTAGGATGGATTCCAAAGCGTCACACGCAGCAGCGTCT
TGACAAAACTCCCTCGTCGTCCGTCGCCTACACCAGGACTGCGCCAATGG
GAGCGTGGGAGACTTCATGCTCGACATCTCGGTCGCCCTCATTGATCGGC
TGGAGGGAGTCGTCGACTTCATTTCGAGCCTTTCGGCGGTGACGGCACCT
CTGCTCGTCGTGTCTGGTGAGTGTTTTCTTGTTCCTCGGTCGGTCGATTT
TCGTCGGCGTTTCTCGGTTTCTTGGCCACACGTTGGAGCGAGAGAGAAAC
ACGAGACATACATCACCTCGTCAACCACGTTGGCTGCAGGGCGGAGCATC
ACCGTTCCGAGTGTCCTCTCTCTCGGGACGGATCGACCCAGCACCGGTCA
AAGCATCTTACTCCTACAATGCCTGTGTGCAAGAAACGTTAACAGTACTT
GTTCCGTTCAGATAGAAACGAAGTCTGTCCAGACAAATGGAAATGACAGG
GGGCGTCGATGCTCTTGCCGGCTCACGAGGAGTCGGGCGTTCGAGCCCCG
ATGCCAACTCCATCGAGTGACATCGTTTCTGCCACGTTGTTGCTGGTTGT
TGTTTCCAATCGGTCATCTCCAATAAAAATGGAGAGGCACTGGTTGCAGA
CAGTACTTGTCTTTCCCTGGGTCACACCAAACTACTCACGAGATGCCTCA
AGAACAACTCTGCCACGGAGAGAGGTCGCGTTTATATCTCTGTGTGCATT
TTTCATGCTACTTTGTTCAAAATAATCCAATATTGAAAGTTCGAACGTGG
ACGATCGTTAACAACTTGAGGGCCGGCAAGCAGATCGTCCTCTGGATCAA
GGCGGACTTGATTCGGACTCCAAACAATAACAAATCAACCCCCACCATCT
TCCATTAAACCTGGTACTCAAAGTGAATATAATACTCCTCACCATCTTCC
GTTTTAACTTGGCCACCTTTGAACCTGACATTAACACTCACGAGGGCGCT
CATTCTCCAAGCAACGAAACGGGTCGTGAAAGCAGGAAACAGTCCTCCGC
AGCTTGCTCAGCAGACGCGTACTCCGGCGCCGCCTCCACTTTCGCCTCCA
CGTGATAATCCGATCTCGGTTCTTAGAGGCCAACGGTAATCACCACACGC
CCGCACCTTTGGTGACGGAAAATGACCTTTGTATTGGTGCCAATGTGATG
ATGGTGTGTGTCTCCGGGGAAAAAACGTATGAATCGTTCGTTTTCAGATG
ATTTACGCAAGCACTTGCAAGCGAATTTCACCCCCCTCCGCCCGAAACCC
GTATCAAAAACTCAACGTTTTTTAGCCAACCTTGGGACGGCGACCGGCGT
TATCGACACCACCGAGAGGGCCGTCATCAACATCAACAACTCCATCACGA
GCGTCAACGCCATCATCACTGGCGACGGACCCGTTGCCGAACTCATGGAC
GGGGAAACCATCACCAACATCGATGGTGACGTCCTGGACGACATTCAAGA
TGGGAGGGATGCGCTGGAACAAGCGACCGAGCTGACGGAGAGCTCCAGCC
TGGAGATCGCAGAGTGGGTTATATGCGGTAGCGGTAGAAGTGGTAGTTGC
GGTAGTCGTGGGATGCGTTGTTGATGTTGTCATTGCCGTTGTTGTGTCAG
GTGCAAATGCAGTCCGTTTCCTTGCGGAGCACAGATGCTGGCATTTGCCA
CCTGGGTGCCCTTGCCGAGGCCGAAAAATATAGTTTGTTCAAGTTTCGTA
AAACATAGCGTCGTTCAAACAAGTCTTGAAAACACGGCGAAATCCATATT
GCAAACCTTGCCGGTAAGATCATCGTTTGGTGGCAGCGGAATACAAACCA
CGGAGGGAAATGGCGGCATTGTCCACTCTGTTGTACCTAGCACAGTTGAC
AGGCGTGCCTGGTTGTCTTCATCACACTGTACTCCATCTGATGTCAATAC
CGTTCGAATCGGCCGAAGTTCAGGTCCTTTGTGGTTTGTAAACACCCGAT
CAAAATCCACACACAAACGCGCAGCCTTCTTTGTGATTGGTTTCTTCTTG
GGGAGACAGGCAGCTAACTGGTAACGAGTCAACGATCACGCGCATCAAGT
ACCAGCTGGACGAGGTCAACGGCAACGAGATCCTCGGCGACGAAGACATT
CGAAACGCGACCCTCACCACAGTCCTCGACGAGTGAGTGCAGACGTTTTC
GCCTAGAATAGGCAAGGTTTGCTGTCTTTCTTGGCACGTTAACCGCTTAC
AGCATGTTTCGGAGCTCAGGAACAAATGTGTTGGTCGTGTGTGATTCATC
GTGTGCGCTCGAAGCACATCCGTGCCTCGAAATAATATTTTCATGATTAA
AGCAACTTAAATACTGACAGTTGATTTTCCAGTTCTCGCTGATTCTCTCT
CTGGGGAGAAGGCTCGCTCAGAACAGGCACATGGCCGCACCCCGCATTCG
AGGACGTCATGTTTGACAGAGTTGTTTTTGCCCTCGCCGACGTGCAATAC
AGAGAACTTCGAGCTTGGTCGTTGGTTAGAGCCCCGGCAAACCGGCAACC
CCCAATTACACATACGATGGTTACGTTGAAAACGGTCCCCACCCACCAAT
TCCAGTATCAACACCGACACGAACAAAAACAGCGGCTGACTCCACGAAAT
TCATCGGAGAAACAAAAAGAAGTCTAACAGCAAAGACCGGCAGCGACAGC
AACATATGTCAACCCTCCGCCTCTCCCCCCGTTTTCACAGTGTACTACAG
CCCATGAGGGACCTGACGGTGGACATCTATGACGTGCAGAACGACGACAT
CCCTGAAGTGCGTGAGAATATCGAGGTGTACCTTGACCAGGTGAGTGAAT
AGCCCATGTAGTGTCTGGCACCAGGGCTGGTGGGTGGCAGACTGAGATTG
TAATGACAAGTTATGAAGTGGAGTTTGCTGGGTCCCGAGACAGTGGAGTC
TCAAACCTGTTGTCGACAAAGTTCGCAGGGTAACACACGGTCGTCCAGAC
GACATCTTCGATGCCTCATGTTACACGAATTTAAATCGTTGAGGGTGTGT
TGTCTCTTCCCTCTTTTACCAGGAATAAAGCGAAGAGATGACCACAACCA
ACAGCGTGGTGTATCGAATGCATGAAAGTGTAAAGTGAAGCATTCTCGCT
TGAAACGGTGGCGGTCTATGAAGCGAGTTTGTTCGGCGACACTTTGGTGA
AGCTCGATGGCAAATATTCTTTGTCGGACCGAGCATGGCTTCCCAACCTG
ACTCTCGCATCTGATTCAATAGATAGGCGCCGGTTCATCGTTTCACCACA
AACGTTGCATGGACAGCCGAAAACGCCGAGGTGCTGTATTTGGAGATTCT
TACCCGTTACCCGTTACGATTACTGTAGTATACTTTATGAGAATCTCCAC
GCACTCTTGCATCGGTCTACAGTAGTTGCCGCCTAACCTCGCGCATTAAT
TGCCGGTCCAGTATCCTGTATTAAATTTCATCGTGCAATATCGATTTCGA
ATACGTTCAGAGTCCGACTGCCTGCTCATACGGTAGGTTCCAATTTCAAA
TTGCACTTTCGCTGGGGTTACGCACTTGATGTGTAGTTGGGCCTGTAAAA
GTTGGAGTTTGCCGCAGGCAGAGCCGATCCCTTTCTAACAAAGCCGAAGA
TCCAATCATGGAACATCGTGTTGCACACTGCTTTCGCGGGAAGCCGTCTT
TGATTAAGAAAACTGGTTATATCTACTAATATCGAGGCATCCCGCACACC
AAAGATGAGGCCGAAAAGATACAACAAGACATCTTGAAGAAATGATCTTG
TTCCTTGCAACAAGCGTGCTTCTATGCCGGCAGCACAAGCGCTTTCGATG
AGGCCTCCTCGTATGTACATTTGCACCTCCTTGGAAAACTATATGCAGGC
CGTCCAAGCCGTCGCGGGGATAATCTTCCTCCCTGGAGTCATCTTGTTCC
TCACTTCGCTCTGCTCGGGCGTGTGCCAATCTTCAAAGGTGTGTGAAATC
CTGTTGCGTCGGCCCGGACAGTCTGCGTGAGACCGTCTTAGAATCGTGGG
TGTAGGCGTAATGTCGGTACACCGTTTGCGGCGTGTTCTCTTCCTCAGCA
CGTTCGGTGCGTGTTACGAAGACCCTCTCACCTCGCGTCGCTGGAACAAA
CTGTGGACGCATCGCGCATACAGCATTCAATTCTTGGGTAGGTGCGGCAA
TGGTGTCATTGTTGTAGTACCGAATTGTTTCGACCTGTCGGGTGGCAAGC
TCGGGGGCGTACATGAGACCGCGTGGACTATCTCGATATGGCGGTAGACG
TTGCACCCCGGCGCGTTTCGTCCTCCCGGCTTGTCGTCGGAAGCCTTCTC
TGGGGACGATGAAAACGGCCGTAACTCCCGTGCGCACAGCGTAGTGAATC
TCGGACCTGGGATGAAGCAAACTACTACGTCTCACCGATGCTTCTGCGCC
CTGCTAGCCGTCACTCCCTAGCTCCACAAGCTAATGACAAGAACCCCCTT
CCCAACCGTACGCCTCCCCCCTACCTTGTCGCTGTTTGTGCGGCTGCCTC
TCGGGTTGTTCGTTCCATCACCGCCGCCTCCGTGGCTGATGCGACACCAT
CCGCGGTAGCCTCTATACCTCAACATGTTCTTCGTCTTCATGACCCAGAT
CCTGTTTTGTTTAGTGGCGGGCGTCTTTCTCGCGGTGTCCAAGATCAACG
GGGATCTGTGCGACCACCACATGGAACTCATCGAAGCCAACTTACCCGAG
TTCAACACCACGGTTCAGGTGAAAAAGAGGCCTAGTTCGAAACGAAACGT
CCACGCAAGTAAATACAACACCCACAAACACCCCCGCGGAGCCTCGTCAT
CGTGGTGAGAAAGCCATCCGAAAACCGGCAACGGCCGAGAAGAGCACGGT
GTATTCCGCCGCGAAGTGCAGAATCGGGGGACAAAAATCTTCTTTTCGCA
TTTCGATTTTGAACCAGATGAACCCTTGGTGCATTTGCCACTCAACGCGA
CGATGAGGTTTTTCTCTCGCATCTTTTTCTCGACTCTCCAATGCATTTGG
CGTTAACATTTGCAACTTCGAGAACTTCAAACCGGGGCAAGTGCAACGCA
GGGAGCATGTACAATGTCAATGGCCCACGCATGGGTACGTGTTGCTCCAT
GCCGTTACCCGTCGGTTTTATTACCGCTGATAAAGACACCCTTGGACGAT
GTTGTTCTTCTATTAGGACGTCGAGATAGTCGTCGACTTCCCTAAGGTCG
AGAAGATCCTGACCTGTTCCGGCGACGCCGGTGACGTGCCCACGGACTCG
AACAACTTCGTCGACATCTTGGAAATACAACAGGTAATGTCT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8587:929..6770+

>mRNA_Ecto-sp13_S_contig8587.19996.1 ID=mRNA_Ecto-sp13_S_contig8587.19996.1|Name=mRNA_Ecto-sp13_S_contig8587.19996.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1050bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8587:929..6770+ (Ectocarpus species13 EcNAP12_S_4_19m)
GCATCGTTCGGCTCGATCTTCGACGGGACGGACGTCCTTCTCACGCGGGC
ACAGGAGGCTCTCTGCGCGGAGAACGGGAGTGCGGACTGCGCCAATGGGA
GCGTGGGAGACTTCATGCTCGACATCTCGGTCGCCCTCATTGATCGGCTG
GAGGGAGTCGTCGACTTCATTTCGAGCCTTTCGGCGGTGACGGCACCTCT
GCTCGTCGTGTCTGCCAACCTTGGGACGGCGACCGGCGTTATCGACACCA
CCGAGAGGGCCGTCATCAACATCAACAACTCCATCACGAGCGTCAACGCC
ATCATCACTGGCGACGGACCCGTTGCCGAACTCATGGACGGGGAAACCAT
CACCAACATCGATGGTGACGTCCTGGACGACATTCAAGATGGGAGGGATG
CGCTGGAACAAGCGACCGAGCTGACGGAGAGCTCCAGCCTGGAGATCGCA
GAGCAGCTAACTGGTAACGAGTCAACGATCACGCGCATCAAGTACCAGCT
GGACGAGGTCAACGGCAACGAGATCCTCGGCGACGAAGACATTCGAAACG
CGACCCTCACCACAGTCCTCGACGATGTACTACAGCCCATGAGGGACCTG
ACGGTGGACATCTATGACGTGCAGAACGACGACATCCCTGAAGTGCGTGA
GAATATCGAGGTGTACCTTGACCAGGCCGTCCAAGCCGTCGCGGGGATAA
TCTTCCTCCCTGGAGTCATCTTGTTCCTCACTTCGCTCTGCTCGGGCGTG
TGCCAATCTTCAAAGCCTCTATACCTCAACATGTTCTTCGTCTTCATGAC
CCAGATCCTGTTTTGTTTAGTGGCGGGCGTCTTTCTCGCGGTGTCCAAGA
TCAACGGGGATCTGTGCGACCACCACATGGAACTCATCGAAGCCAACTTA
CCCGAGTTCAACACCACGGTTCAGGACGTCGAGATAGTCGTCGACTTCCC
TAAGGTCGAGAAGATCCTGACCTGTTCCGGCGACGCCGGTGACGTGCCCA
CGGACTCGAACAACTTCGTCGACATCTTGGAAATACAACAGGTAATGTCT
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