mRNA_Ecto-sp13_S_contig8576.19984.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8576.19984.1
Unique NamemRNA_Ecto-sp13_S_contig8576.19984.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8576.19984.1 vs. uniprot
Match: A0A6H5L7Z1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Z1_9PHAE)

HSP 1 Score: 104 bits (259), Expect = 8.650e-25
Identity = 48/51 (94.12%), Postives = 51/51 (100.00%), Query Frame = 1 
Query:    1 GQDLLAMDMGVSSDPLVIFRLGGKEKRSRVIQKNLNPQWEEVFEFECRSSG 153
            GQDLLA+DMGVSSDPLVIF+LGGKE+RSRVIQKNLNPQWEEVFEFECRSSG
Sbjct:  553 GQDLLALDMGVSSDPLVIFKLGGKEQRSRVIQKNLNPQWEEVFEFECRSSG 603
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BLAST of mRNA_Ecto-sp13_S_contig8576.19984.1 vs. uniprot
Match: D8LF87_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LF87_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 7.640e-24
Identity = 46/51 (90.20%), Postives = 50/51 (98.04%), Query Frame = 1 
Query:    1 GQDLLAMDMGVSSDPLVIFRLGGKEKRSRVIQKNLNPQWEEVFEFECRSSG 153
            GQDLLA+DMG SSDPLVIF+LGGKE+RSRVIQKNLNPQWEEVFEFECR+SG
Sbjct:  476 GQDLLALDMGTSSDPLVIFKLGGKEQRSRVIQKNLNPQWEEVFEFECRNSG 526
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BLAST of mRNA_Ecto-sp13_S_contig8576.19984.1 vs. uniprot
Match: A0A7M5V543_9CNID (C2 domain-containing protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5V543_9CNID)

HSP 1 Score: 58.5 bits (140), Expect = 1.070e-8
Identity = 24/50 (48.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:    4 QDLLAMDMGVSSDPLVIFRLGGKEKRSRVIQKNLNPQWEEVFEFECRSSG 153
            Q+L+A D   +SDP V  ++G  +KR++ IQKNLNP W E+F F+C +S 
Sbjct:   56 QNLIAKDKAGTSDPYVTVQVGKVKKRTKTIQKNLNPVWNEIFNFQCHNSS 105
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BLAST of mRNA_Ecto-sp13_S_contig8576.19984.1 vs. uniprot
Match: A0A7M5XAE6_9CNID (Uncharacterized protein n=1 Tax=Clytia hemisphaerica TaxID=252671 RepID=A0A7M5XAE6_9CNID)

HSP 1 Score: 58.5 bits (140), Expect = 1.140e-8
Identity = 24/50 (48.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:    4 QDLLAMDMGVSSDPLVIFRLGGKEKRSRVIQKNLNPQWEEVFEFECRSSG 153
            Q+L+A D   +SDP V  ++G  +KR++ IQKNLNP W E+F F+C +S 
Sbjct:  610 QNLIAKDKAGTSDPYVTVQVGKVKKRTKTIQKNLNPVWNEIFNFQCHNSS 659
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BLAST of mRNA_Ecto-sp13_S_contig8576.19984.1 vs. uniprot
Match: A0A2G8KVR0_STIJA (Uncharacterized protein n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8KVR0_STIJA)

HSP 1 Score: 58.2 bits (139), Expect = 1.560e-8
Identity = 24/50 (48.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:    4 QDLLAMDMGVSSDPLVIFRLGGKEKRSRVIQKNLNPQWEEVFEFECRSSG 153
            Q L+A D   +SDP V  ++G  +KR+R +Q+NLNP+W E+F FEC +S 
Sbjct:  105 QGLIAKDKTGTSDPYVTVQVGKVKKRTRTVQQNLNPEWNEIFYFECHNSS 154
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BLAST of mRNA_Ecto-sp13_S_contig8576.19984.1 vs. uniprot
Match: A0A2G8JDW2_STIJA (Uncharacterized protein n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8JDW2_STIJA)

HSP 1 Score: 58.2 bits (139), Expect = 1.560e-8
Identity = 24/50 (48.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:    4 QDLLAMDMGVSSDPLVIFRLGGKEKRSRVIQKNLNPQWEEVFEFECRSSG 153
            Q L+A D   +SDP V  ++G  +KR+R +Q+NLNP+W E+F FEC +S 
Sbjct:  641 QGLIAKDKTGTSDPYVTVQVGKVKKRTRTVQQNLNPEWNEIFYFECHNSS 690
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BLAST of mRNA_Ecto-sp13_S_contig8576.19984.1 vs. uniprot
Match: A0A0M0JD68_9EUKA (C2 domain containing protein (Fragment) n=1 Tax=Chrysochromulina tobinii TaxID=1460289 RepID=A0A0M0JD68_9EUKA)

HSP 1 Score: 55.8 bits (133), Expect = 1.010e-7
Identity = 25/44 (56.82%), Postives = 31/44 (70.45%), Query Frame = 1 
Query:    4 QDLLAMDMGVSSDPLVIFRLGGKEKRSRVIQKNLNPQWEEVFEF 135
            +DL++MD    SDP V F L GKE +++VI KNLNP W EVF F
Sbjct:  313 RDLMSMDSNGFSDPYVKFSLAGKEVKTKVIYKNLNPNWSEVFTF 356
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BLAST of mRNA_Ecto-sp13_S_contig8576.19984.1 vs. uniprot
Match: A0A8B7Y1F3_ACAPL (protein unc-13 homolog B-like isoform X1 n=7 Tax=Asteroidea TaxID=7588 RepID=A0A8B7Y1F3_ACAPL)

HSP 1 Score: 55.8 bits (133), Expect = 1.020e-7
Identity = 24/50 (48.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:    4 QDLLAMDMGVSSDPLVIFRLGGKEKRSRVIQKNLNPQWEEVFEFECRSSG 153
            Q L+A D   +SDP V  ++G  +KR+R +Q+NLNP+W E F FEC +S 
Sbjct:  796 QGLIAKDKTGTSDPYVTVQVGKVKKRTRTVQQNLNPEWNEKFFFECHNSS 845
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BLAST of mRNA_Ecto-sp13_S_contig8576.19984.1 vs. uniprot
Match: A0A7M7NAQ3_STRPU (Uncharacterized protein n=11 Tax=Echinacea TaxID=7674 RepID=A0A7M7NAQ3_STRPU)

HSP 1 Score: 55.8 bits (133), Expect = 1.020e-7
Identity = 24/50 (48.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:    4 QDLLAMDMGVSSDPLVIFRLGGKEKRSRVIQKNLNPQWEEVFEFECRSSG 153
            Q L+A D   +SDP V  ++G  +KR+R +Q+NLNP+W E F FEC +S 
Sbjct:  894 QGLIAKDKTGTSDPYVTVQVGKVKKRTRTVQQNLNPEWNEKFFFECHNSS 943
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BLAST of mRNA_Ecto-sp13_S_contig8576.19984.1 vs. uniprot
Match: UPI001C04AB6A (multiple C2 and transmembrane domain-containing protein 1 isoform X3 n=1 Tax=Corvus kubaryi TaxID=68294 RepID=UPI001C04AB6A)

HSP 1 Score: 55.1 bits (131), Expect = 1.900e-7
Identity = 27/42 (64.29%), Postives = 32/42 (76.19%), Query Frame = 1 
Query:    1 GQDLLAMDMGVSSDPLVIFRLGGKEK-RSRVIQKNLNPQWEE 123
            GQ+L A D G +SDP V F+LGGKE  RS+ +QKNLNP WEE
Sbjct:  222 GQNLAARDRGGTSDPYVKFKLGGKEVFRSKTVQKNLNPVWEE 263
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8576.19984.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5L7Z1_9PHAE8.650e-2594.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LF87_ECTSI7.640e-2490.20Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7M5V543_9CNID1.070e-848.00C2 domain-containing protein n=1 Tax=Clytia hemisp... [more]
A0A7M5XAE6_9CNID1.140e-848.00Uncharacterized protein n=1 Tax=Clytia hemisphaeri... [more]
A0A2G8KVR0_STIJA1.560e-848.00Uncharacterized protein n=1 Tax=Stichopus japonicu... [more]
A0A2G8JDW2_STIJA1.560e-848.00Uncharacterized protein n=1 Tax=Stichopus japonicu... [more]
A0A0M0JD68_9EUKA1.010e-756.82C2 domain containing protein (Fragment) n=1 Tax=Ch... [more]
A0A8B7Y1F3_ACAPL1.020e-748.00protein unc-13 homolog B-like isoform X1 n=7 Tax=A... [more]
A0A7M7NAQ3_STRPU1.020e-748.00Uncharacterized protein n=11 Tax=Echinacea TaxID=7... [more]
UPI001C04AB6A1.900e-764.29multiple C2 and transmembrane domain-containing pr... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8576contigEcto-sp13_S_contig8576:5838..5993 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score90.9
Seed ortholog evalue1.7e-16
Seed eggNOG ortholog2880.D8LF87
Model size156
KEGG koko:K19949,ko:K22125,ko:K22127
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.plasma membrane repair
EggNOG OGsKOG1030@1,KOG1030@2759,KOG1326@1,KOG1326@2759
Cds size138
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464128.7215285-CDS-Ecto-sp13_S_contig8576:5837..59751681464128.7215285-CDS-Ecto-sp13_S_contig8576:5837..5975Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8576 5838..5975 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464128.7326343-UTR-Ecto-sp13_S_contig8576:5975..59931681464128.7326343-UTR-Ecto-sp13_S_contig8576:5975..5993Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8576 5976..5993 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8576.19984.1prot_Ecto-sp13_S_contig8576.19984.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8576 5838..5975 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8576.19984.1

>prot_Ecto-sp13_S_contig8576.19984.1 ID=prot_Ecto-sp13_S_contig8576.19984.1|Name=mRNA_Ecto-sp13_S_contig8576.19984.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=46bp
MDMGVSSDPLVIFRLGGKEKRSRVIQKNLNPQWEEVFEFECRSSG*
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mRNA from alignment at Ecto-sp13_S_contig8576:5838..5993-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8576.19984.1 ID=mRNA_Ecto-sp13_S_contig8576.19984.1|Name=mRNA_Ecto-sp13_S_contig8576.19984.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=156bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8576:5838..5993- (Ectocarpus species13 EcNAP12_S_4_19m)
GGTCAAGACCTGTTGGCGATGGACATGGGGGTCAGCTCTGATCCGCTCGT
CATTTTTAGGCTCGGCGGCAAGGAGAAGCGTTCGCGGGTCATACAGAAAA
ATCTCAACCCACAATGGGAAGAGGTGTTCGAGTTCGAGTGCAGGAGCTCC
GGGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8576:5838..5993-

>mRNA_Ecto-sp13_S_contig8576.19984.1 ID=mRNA_Ecto-sp13_S_contig8576.19984.1|Name=mRNA_Ecto-sp13_S_contig8576.19984.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=138bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8576:5838..5993- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACATGGGGGTCAGCTCTGATCCGCTCGTCATTTTTAGGCTCGGCGG
CAAGGAGAAGCGTTCGCGGGTCATACAGAAAAATCTCAACCCACAATGGG
AAGAGGTGTTCGAGTTCGAGTGCAGGAGCTCCGGGTGA
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