mRNA_Ecto-sp13_S_contig8569.19976.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
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Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig8569.19976.1 vs. uniprot
Match: D7FTE6_ECTSI (WSC domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FTE6_ECTSI) HSP 1 Score: 313 bits (803), Expect = 1.510e-102 Identity = 140/156 (89.74%), Postives = 146/156 (93.59%), Query Frame = 1
Query: 1 MGKRILAVLFLYGSTPEMLVAASCKDGYPADYSLRGCFADSTIDRIMPKIRLVHLQEMTQQGPMSAETCYYICDDGLNTHFGMEYSTECWCAVEPDLIKHGPELDPIECDHLCFGTTTGEYCGGFNKMSVYEITAYQGCQRKDFEMPVEQVPAWVP 468
MG RILA LF +GSTP++LVAASCKDGYPADYS RGCFADSTIDRIMP IRLVHLQEMTQQGPMSAETCY+ICDDGLNTHFGMEYSTECWCAVEPDL KHGPELDPIECDHLCFGTTT EYCGGFNKMSVYEITAYQGC +DFE+PVE VPAWVP
Sbjct: 1 MGTRILAFLFFWGSTPDLLVAASCKDGYPADYSPRGCFADSTIDRIMPNIRLVHLQEMTQQGPMSAETCYFICDDGLNTHFGMEYSTECWCAVEPDLTKHGPELDPIECDHLCFGTTTDEYCGGFNKMSVYEITAYQGCHSEDFEVPVEHVPAWVP 156
BLAST of mRNA_Ecto-sp13_S_contig8569.19976.1 vs. uniprot
Match: D7FK39_ECTSI (WSC domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK39_ECTSI) HSP 1 Score: 153 bits (387), Expect = 1.510e-39 Identity = 70/122 (57.38%), Postives = 83/122 (68.03%), Query Frame = 1
Query: 79 GYPADYSLRGCFADSTIDRIMPKIRLVHLQEMTQQGPMSAETCYYICDDGLNTHFGMEYSTECWCAVEPDLIKHGPELDPIECDHLCFGTTTGEYCGGFNKMSVYEITAYQGCQRKDFEMPV 444
G PAD+S GC+ADS RI L Q PMSAE CY CDDG+NTHFGM+YS ECWC + P+L ++G EL ECD LC GTTTGE CGGF KMSV+EITAY+GCQ + + P+
Sbjct: 35 GCPADFSFVGCYADSVGKRI--------LNSRGQHNPMSAEMCYMFCDDGVNTHFGMQYSGECWCGIHPELNQNGEELAAGECDFLCAGTTTGEICGGFLKMSVFEITAYKGCQYEALDQPI 148
BLAST of mRNA_Ecto-sp13_S_contig8569.19976.1 vs. uniprot
Match: D7G445_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G445_ECTSI) HSP 1 Score: 105 bits (263), Expect = 1.060e-24 Identity = 54/115 (46.96%), Postives = 68/115 (59.13%), Query Frame = 1
Query: 91 DYSLRGCFADSTIDRIMPKIRLVHLQEMTQQGPMSAETCYYICDDGLNTHFGMEYSTECWCAVEPDLIKHGPELDPIECDHLCFGTTTGEYCGGFNKMSVYEITAYQGCQRKDFE 435
D+ L GC+ADS RIM + + MSA+ CY +C+DG NTHFG ++ ECWC + P L HG ELD CD C GT GE CGGF+KM+VY+I A G D+E
Sbjct: 30 DFVLVGCYADSRSLRIM--------FDKQSKPIMSADICYDLCNDGTNTHFGTQFGRECWCGIHPALATHG-ELDIDSCDMACKGTG-GENCGGFDKMTVYDIQAVNGGTGTDYE 134
BLAST of mRNA_Ecto-sp13_S_contig8569.19976.1 vs. uniprot
Match: A0A6H5KUX7_9PHAE (WSC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUX7_9PHAE) HSP 1 Score: 99.4 bits (246), Expect = 1.010e-22 Identity = 52/128 (40.62%), Postives = 67/128 (52.34%), Query Frame = 1
Query: 91 DYSLRGCFADSTIDRIMPKIRLVHLQEMTQQ-------------GPMSAETCYYICDDGLNTHFGMEYSTECWCAVEPDLIKHGPELDPIECDHLCFGTTTGEYCGGFNKMSVYEITAYQGCQRKDFE 435
DY L GC+ADS RIM + + + G A+ C+ +C+DG NTHFG +Y ECWC + P L +HG ELD CD C G E CGGF+KM+VY+I A G D+E
Sbjct: 21 DYVLVGCYADSQSGRIMFNKQSEDVMSASVSCTVLLLRTLAFWIGAWRAQICFDLCNDGTNTHFGTQYGEECWCGIHPALARHG-ELDIDSCDFPCAGNEE-ETCGGFDKMTVYDIQAVNGGTGTDYE 146
BLAST of mRNA_Ecto-sp13_S_contig8569.19976.1 vs. uniprot
Match: A0A6H5JN62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN62_9PHAE) HSP 1 Score: 99.4 bits (246), Expect = 4.410e-22 Identity = 52/128 (40.62%), Postives = 67/128 (52.34%), Query Frame = 1
Query: 91 DYSLRGCFADSTIDRIMPKIRLVHLQEMTQQ-------------GPMSAETCYYICDDGLNTHFGMEYSTECWCAVEPDLIKHGPELDPIECDHLCFGTTTGEYCGGFNKMSVYEITAYQGCQRKDFE 435
DY L GC+ADS RIM + + + G A+ C+ +C+DG NTHFG +Y ECWC + P L +HG ELD CD C G E CGGF+KM+VY+I A G D+E
Sbjct: 21 DYVLVGCYADSQSGRIMFNKQSEDVMSASVSCTVLLLRTLAFWIGAWRAQICFDLCNDGTNTHFGTQYGEECWCGIHPALARHG-ELDIDSCDFPCAGNEE-ETCGGFDKMTVYDIQAVNGGTGTDYE 146
BLAST of mRNA_Ecto-sp13_S_contig8569.19976.1 vs. uniprot
Match: A0A6H5L1N0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1N0_9PHAE) HSP 1 Score: 102 bits (254), Expect = 1.020e-21 Identity = 59/143 (41.26%), Postives = 71/143 (49.65%), Query Frame = 1
Query: 79 GYPADYSLRGCFADSTIDRIMPKIRLVHLQEMTQQGPMSAETCYYICDDG-----------LNTHFGM----------EYSTECWCAVEPDLIKHGPELDPIECDHLCFGTTTGEYCGGFNKMSVYEITAYQGCQRKDFEMPV 444
G PAD+S GC+ADS RI Q PMSAE G N FG +T+CWC + P+L ++G EL ECD LC GTTTGE CGGF KMSV+EITAY GCQ + + P+
Sbjct: 35 GCPADFSFVGCYADSVGKRIF--------NSRGQHYPMSAEEVQPYATYGDVYFPHPELLPYNLLFGHPPLDFLLDPPRINTKCWCGIHPELNQNGEELAAGECDFLCAGTTTGEICGGFLKMSVFEITAYMGCQYEALDQPI 169
BLAST of mRNA_Ecto-sp13_S_contig8569.19976.1 vs. uniprot
Match: A0A6H5KPY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KPY5_9PHAE) HSP 1 Score: 85.1 bits (209), Expect = 3.350e-17 Identity = 36/68 (52.94%), Postives = 49/68 (72.06%), Query Frame = 1
Query: 241 FGMEYS-TECWCAVEPDLIKHGPELDPIECDHLCFGTTTGEYCGGFNKMSVYEITAYQGCQRKDFEMP 441
+ +EYS +CWC+ EP L + GPE D +C+ C GTT G+ CGG +KMSVYEIT YQGC ++F++P
Sbjct: 19 YAVEYSYRQCWCSREPKLSELGPEPDHDDCNMPCNGTTIGDPCGGIHKMSVYEITTYQGCDSEEFDVP 86
BLAST of mRNA_Ecto-sp13_S_contig8569.19976.1 vs. uniprot
Match: UPI0018745C00 (copper radical oxidase n=1 Tax=Colletotrichum truncatum TaxID=5467 RepID=UPI0018745C00) HSP 1 Score: 61.2 bits (147), Expect = 1.530e-7 Identity = 35/107 (32.71%), Postives = 53/107 (49.53%), Query Frame = 1
Query: 85 PADYSLRGCFADSTIDRIMPKIRLVHLQEMTQQGPMSAETCYYICDDGLNTHFGMEYSTECWCAVEPDLIKHGPELDPIECDHLCFGTTTGEYCGGFNKMSVYEITA 405
P ++ GC+ D+ R++ + G MS + C C + G+EYS+EC+C I G + C+ LC G +T EYCGG N++SVY+ TA
Sbjct: 135 PTGWTSLGCYNDNIPGRVLA----YRYGVVGGDGAMSVQLCANACKAAGFAYAGVEYSSECYCDNN---ILSGAQSGQSGCNMLCSGNST-EYCGGSNRISVYQSTA 233
BLAST of mRNA_Ecto-sp13_S_contig8569.19976.1 vs. uniprot
Match: A0A6H5JVT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVT8_9PHAE) HSP 1 Score: 58.9 bits (141), Expect = 8.090e-7 Identity = 37/122 (30.33%), Postives = 59/122 (48.36%), Query Frame = 1
Query: 37 GSTPEMLVAASCKDGYPADYSLRGCFADS-TIDRIMPKIRLVHLQEMTQQGPMSAETCYYICDD--GLNTHFGMEYSTECWCAV-EPDLIKHGPELDPIECDHLCFGTTTGEYCGGFNKMSV 390
G+T E+ Y D + GC++D T + + R+ +MT +CDD + +G +Y TECWC D ++GP + CD+ C G+T GE+CGGF+ +S+
Sbjct: 33 GNTDEVCGGQYALSIYSNDPNYLGCWSDPYTAETRLFSTRIDVSDDMTTA----------VCDDLCAIYPLYGTQYGTECWCDDGTSDYDQNGPAV----CDYECAGSTDGEFCGGFDAISI 140
BLAST of mRNA_Ecto-sp13_S_contig8569.19976.1 vs. uniprot
Match: UPI000444A030 (copper radical oxidase n=1 Tax=Stereum hirsutum (strain FP-91666) TaxID=721885 RepID=UPI000444A030) HSP 1 Score: 58.9 bits (141), Expect = 1.080e-6 Identity = 34/104 (32.69%), Postives = 56/104 (53.85%), Query Frame = 1
Query: 106 GCFADSTIDRIMPKIRLVHLQEMTQQGPMSAETCYYICDDGLNTHFGMEYSTECWCAVEPDLIKHGPELDPI-ECDHLCFGTTTGEYCGGFNKMSVYEITAYQG 414
GC+ DST DR++ V G +S +TC C GME++ EC+C++ I +G +P +C+ C G ++ E+CGG N+++VY +T + G
Sbjct: 161 GCYNDSTADRVLDVPTDV-------TGSVSVQTCTAACFASGYPLAGMEFADECYCSLS---ILNGGVPEPAGDCNMPCVGNSS-EFCGGPNRLNVYNLTDHTG 253 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8569.19976.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 16
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig8569.19976.1 >prot_Ecto-sp13_S_contig8569.19976.1 ID=prot_Ecto-sp13_S_contig8569.19976.1|Name=mRNA_Ecto-sp13_S_contig8569.19976.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=161bp MGKRILAVLFLYGSTPEMLVAASCKDGYPADYSLRGCFADSTIDRIMPKIback to top mRNA from alignment at Ecto-sp13_S_contig8569:3587..6556+ Legend: CDSpolypeptideUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig8569.19976.1 ID=mRNA_Ecto-sp13_S_contig8569.19976.1|Name=mRNA_Ecto-sp13_S_contig8569.19976.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2970bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8569:3587..6556+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8569:3587..6556+ >mRNA_Ecto-sp13_S_contig8569.19976.1 ID=mRNA_Ecto-sp13_S_contig8569.19976.1|Name=mRNA_Ecto-sp13_S_contig8569.19976.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=483bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8569:3587..6556+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |