mRNA_Ecto-sp13_S_contig85632.19971.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig85632.19971.1
Unique NamemRNA_Ecto-sp13_S_contig85632.19971.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig85632.19971.1 vs. uniprot
Match: D8LGK4_ECTSI (alpha-1,2-Mannosidase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LGK4_ECTSI)

HSP 1 Score: 112 bits (279), Expect = 2.040e-27
Identity = 53/56 (94.64%), Postives = 56/56 (100.00%), Query Frame = 1 
Query:    1 WLMGMKDEFYRARDWVKNKLTFSHASEVSVFETTIRELGGLLSAFDLSKDEIFKTK 168
            WLMGMK+EFYRARDWVK+KLTFSHASEVSVFETTIRELGGLLSA+DLSKDEIFKTK
Sbjct:  489 WLMGMKEEFYRARDWVKDKLTFSHASEVSVFETTIRELGGLLSAYDLSKDEIFKTK 544
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BLAST of mRNA_Ecto-sp13_S_contig85632.19971.1 vs. uniprot
Match: A0A7S3MDI2_9STRA (alpha-1,2-Mannosidase (Fragment) n=1 Tax=Spumella elongata TaxID=89044 RepID=A0A7S3MDI2_9STRA)

HSP 1 Score: 87.8 bits (216), Expect = 7.160e-21
Identity = 42/56 (75.00%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:    1 WLMGMKDEFYRARDWVKNKLTFSHASEVSVFETTIRELGGLLSAFDLSKDEIFKTK 168
            WLMGMKDEF  ARDWV + LTF  A  VSVFETTIRELGGLL+A+DLSKD+IF  K
Sbjct:   84 WLMGMKDEFKEARDWVAHSLTFDKAGSVSVFETTIRELGGLLAAYDLSKDKIFLQK 139
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BLAST of mRNA_Ecto-sp13_S_contig85632.19971.1 vs. uniprot
Match: A0A6U4HU98_9STRA (alpha-1,2-Mannosidase n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A6U4HU98_9STRA)

HSP 1 Score: 88.6 bits (218), Expect = 3.620e-19
Identity = 42/56 (75.00%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:    1 WLMGMKDEFYRARDWVKNKLTFSHASEVSVFETTIRELGGLLSAFDLSKDEIFKTK 168
            WLM MKDEFY ARDWVKN L+F  A  VSVFETTIRELGGLLSA+DLS D +F  K
Sbjct:  654 WLMDMKDEFYEARDWVKNSLSFDRAGTVSVFETTIRELGGLLSAYDLSGDAVFLDK 709
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BLAST of mRNA_Ecto-sp13_S_contig85632.19971.1 vs. uniprot
Match: A0A7S2V7D5_9STRA (alpha-1,2-Mannosidase (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2V7D5_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 7.300e-18
Identity = 36/56 (64.29%), Postives = 45/56 (80.36%), Query Frame = 1 
Query:    1 WLMGMKDEFYRARDWVKNKLTFSHASEVSVFETTIRELGGLLSAFDLSKDEIFKTK 168
            WLM MK+EF+RARDWV++ L  S   +VSVFETTIR+LGGLL+AFD S D++F  K
Sbjct:   53 WLMDMKEEFWRARDWVRDHLDHSRTGKVSVFETTIRDLGGLLAAFDFSHDKVFLDK 108
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BLAST of mRNA_Ecto-sp13_S_contig85632.19971.1 vs. uniprot
Match: A0A7S4K3S5_9STRA (alpha-1,2-Mannosidase n=1 Tax=Odontella aurita TaxID=265563 RepID=A0A7S4K3S5_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 1.520e-17
Identity = 37/56 (66.07%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    1 WLMGMKDEFYRARDWVKNKLTFSHASEVSVFETTIRELGGLLSAFDLSKDEIFKTK 168
            WLMGMK+EFY+ARDWV+++L   +  EVSVFETTIR +GGLLSA+DLS D++F  K
Sbjct:  666 WLMGMKNEFYKARDWVRDRLDHDNIDEVSVFETTIRNMGGLLSAYDLSGDDVFLVK 721
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BLAST of mRNA_Ecto-sp13_S_contig85632.19971.1 vs. uniprot
Match: B8C1C1_THAPS (alpha-1,2-Mannosidase n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8C1C1_THAPS)

HSP 1 Score: 83.6 bits (205), Expect = 1.810e-17
Identity = 37/56 (66.07%), Postives = 44/56 (78.57%), Query Frame = 1 
Query:    1 WLMGMKDEFYRARDWVKNKLTFSHASEVSVFETTIRELGGLLSAFDLSKDEIFKTK 168
            WLM +KDEFY ARDWV+  L+ SH  +VS FETTIR LGGLLSA+DLS+D +F  K
Sbjct:   44 WLMDLKDEFYEARDWVRESLSHSHVGDVSAFETTIRSLGGLLSAYDLSRDAVFLEK 99
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BLAST of mRNA_Ecto-sp13_S_contig85632.19971.1 vs. uniprot
Match: A0A7S3XK61_HETAK (alpha-1,2-Mannosidase n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XK61_HETAK)

HSP 1 Score: 82.4 bits (202), Expect = 5.280e-17
Identity = 37/56 (66.07%), Postives = 47/56 (83.93%), Query Frame = 1 
Query:    1 WLMGMKDEFYRARDWVKNKLTFSHASEVSVFETTIRELGGLLSAFDLSKDEIFKTK 168
            WLMG+KDEF+ ARD++K+ L+F    +VSVFETTIR LGGLLSA+DLS D++F TK
Sbjct:  221 WLMGLKDEFWEARDYIKSHLSFGKTGQVSVFETTIRSLGGLLSAYDLSGDKVFLTK 276
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BLAST of mRNA_Ecto-sp13_S_contig85632.19971.1 vs. uniprot
Match: A0A7R9VYD3_9STRA (alpha-1,2-Mannosidase (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9VYD3_9STRA)

HSP 1 Score: 76.6 bits (187), Expect = 7.410e-17
Identity = 35/56 (62.50%), Postives = 41/56 (73.21%), Query Frame = 1 
Query:    1 WLMGMKDEFYRARDWVKNKLTFSHASEVSVFETTIRELGGLLSAFDLSKDEIFKTK 168
            WLMGM+DEFY  RDWV+++L      +VSVFET IR LGGLLSA+DLS D  F  K
Sbjct:   10 WLMGMRDEFYEGRDWVRDRLDHDKVGKVSVFETAIRSLGGLLSAYDLSGDSAFLLK 65
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BLAST of mRNA_Ecto-sp13_S_contig85632.19971.1 vs. uniprot
Match: UPI001CF333CF (mannosyl-oligosaccharide 1,2-alpha-mannosidase IA-like n=3 Tax=Acropora TaxID=6127 RepID=UPI001CF333CF)

HSP 1 Score: 81.3 bits (199), Expect = 1.350e-16
Identity = 39/56 (69.64%), Postives = 46/56 (82.14%), Query Frame = 1 
Query:    1 WLMGMKDEFYRARDWVKNKLTFSHASEVSVFETTIRELGGLLSAFDLSKDEIFKTK 168
            ++MGMKDEF RAR WV   L+F+HAS+VSVFETTIR LGGLLSA+  S DE+FK K
Sbjct:  235 YIMGMKDEFERARKWVAMSLSFNHASDVSVFETTIRFLGGLLSAYAFSGDEVFKVK 290
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BLAST of mRNA_Ecto-sp13_S_contig85632.19971.1 vs. uniprot
Match: A0A6H5L0M9_9PHAE (alpha-1,2-Mannosidase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0M9_9PHAE)

HSP 1 Score: 81.3 bits (199), Expect = 1.350e-16
Identity = 36/53 (67.92%), Postives = 44/53 (83.02%), Query Frame = 1 
Query:    1 WLMGMKDEFYRARDWVKNKLTFSHASEVSVFETTIRELGGLLSAFDLSKDEIF 159
            WLMG+ +EFY  RDWV++ LTF+    VSVFETTIR LGGLLSAF+LS+DE+F
Sbjct:  354 WLMGLTEEFYNGRDWVRDHLTFNEVGMVSVFETTIRVLGGLLSAFELSRDEVF 406
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig85632.19971.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGK4_ECTSI2.040e-2794.64alpha-1,2-Mannosidase n=2 Tax=Ectocarpus TaxID=287... [more]
A0A7S3MDI2_9STRA7.160e-2175.00alpha-1,2-Mannosidase (Fragment) n=1 Tax=Spumella ... [more]
A0A6U4HU98_9STRA3.620e-1975.00alpha-1,2-Mannosidase n=1 Tax=Phaeomonas parva Tax... [more]
A0A7S2V7D5_9STRA7.300e-1864.29alpha-1,2-Mannosidase (Fragment) n=1 Tax=Amphipror... [more]
A0A7S4K3S5_9STRA1.520e-1766.07alpha-1,2-Mannosidase n=1 Tax=Odontella aurita Tax... [more]
B8C1C1_THAPS1.810e-1766.07alpha-1,2-Mannosidase n=1 Tax=Thalassiosira pseudo... [more]
A0A7S3XK61_HETAK5.280e-1766.07alpha-1,2-Mannosidase n=1 Tax=Heterosigma akashiwo... [more]
A0A7R9VYD3_9STRA7.410e-1762.50alpha-1,2-Mannosidase (Fragment) n=1 Tax=Pseudicty... [more]
UPI001CF333CF1.350e-1669.64mannosyl-oligosaccharide 1,2-alpha-mannosidase IA-... [more]
A0A6H5L0M9_9PHAE1.350e-1667.92alpha-1,2-Mannosidase n=1 Tax=Ectocarpus sp. CCAP ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig85632contigEcto-sp13_S_contig85632:3..170 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score106.7
Seed ortholog evalue3.5e-21
Seed eggNOG ortholog2880.D8LGK4
Preferred nameMAN1A2
Model size168
KEGG koko:K01230
KEGG ReactionR05982,R06722
KEGG Pathwayko00510,ko00513,ko01100,ko04141,map00510,map00513,map01100,map04141
KEGG ModuleM00073,M00074
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000139,GO:0002252,GO:0002376,GO:0003674,GO:0003824,GO:0004553,GO:0004559,GO:0004571,GO:0005488,GO:0005509,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005768,GO:0005783,GO:0005793,GO:0005794,GO:0005802,GO:0005829,GO:0006464,GO:0006486,GO:0006487,GO:0006491,GO:0006508,GO:0006511,GO:0006517,GO:0006807,GO:0006950,GO:0007275,GO:0007568,GO:0007585,GO:0008150,GO:0008152,GO:0008340,GO:0009056,GO:0009057,GO:0009058,GO:0009059,GO:0009100,GO:0009101,GO:0009987,GO:0010033,GO:0010243,GO:0010259,GO:0010498,GO:0012505,GO:0015923,GO:0015924,GO:0016020,GO:0016021,GO:0016787,GO:0016798,GO:0019538,GO:0019941,GO:0030163,GO:0030173,GO:0030323,GO:0030324,GO:0030433,GO:0031090,GO:0031224,GO:0031228,GO:0031300,GO:0031301,GO:0031410,GO:0031982,GO:0031984,GO:0032501,GO:0032502,GO:0033554,GO:0034645,GO:0034976,GO:0035010,GO:0035295,GO:0036211,GO:0036503,GO:0036507,GO:0036508,GO:0042221,GO:0042493,GO:0043161,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043413,GO:0043632,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044257,GO:0044260,GO:0044265,GO:0044267,GO:0044422,GO:0044424,GO:0044425,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0046872,GO:0048286,GO:0048513,GO:0048731,GO:0048856,GO:0050896,GO:0051603,GO:0051716,GO:0060541,GO:0070085,GO:0071704,GO:0072347,GO:0097708,GO:0098588,GO:0098791,GO:1901135,GO:1901137,GO:1901564,GO:1901565,GO:1901566,GO:1901575,GO:1901576,GO:1901698,GO:1904381
Exons1
EggNOG free text desc.mannosyl-oligosaccharide 1,2-alpha-mannosidase activity
EggNOG OGsKOG2204@1,KOG2204@2759
EC3.2.1.113
Cds size162
COG Functional cat.G
CAZyGH47
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko04131
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464127.4750102-UTR-Ecto-sp13_S_contig85632:2..81681464127.4750102-UTR-Ecto-sp13_S_contig85632:2..8Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig85632 3..8 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464127.4881146-CDS-Ecto-sp13_S_contig85632:8..1701681464127.4881146-CDS-Ecto-sp13_S_contig85632:8..170Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig85632 9..170 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig85632.19971.1prot_Ecto-sp13_S_contig85632.19971.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig85632 9..170 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig85632.19971.1

>prot_Ecto-sp13_S_contig85632.19971.1 ID=prot_Ecto-sp13_S_contig85632.19971.1|Name=mRNA_Ecto-sp13_S_contig85632.19971.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=54bp
MGMKDEFYRARDWVKNKLTFSHASEVSVFETTIRELGGLLSAFDLSKDEI
FKTK
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mRNA from alignment at Ecto-sp13_S_contig85632:3..170+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig85632.19971.1 ID=mRNA_Ecto-sp13_S_contig85632.19971.1|Name=mRNA_Ecto-sp13_S_contig85632.19971.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=168bp|location=Sequence derived from alignment at Ecto-sp13_S_contig85632:3..170+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGGTTGATGGGCATGAAGGATGAGTTCTACAGGGCACGGGACTGGGTGAA
GAACAAGCTGACTTTTTCGCACGCATCCGAGGTCAGCGTGTTCGAGACCA
CGATTCGGGAGCTGGGAGGTCTGCTTTCGGCGTTTGACCTGTCGAAGGAC
GAGATCTTCAAGACGAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig85632:3..170+

>mRNA_Ecto-sp13_S_contig85632.19971.1 ID=mRNA_Ecto-sp13_S_contig85632.19971.1|Name=mRNA_Ecto-sp13_S_contig85632.19971.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=162bp|location=Sequence derived from alignment at Ecto-sp13_S_contig85632:3..170+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGCATGAAGGATGAGTTCTACAGGGCACGGGACTGGGTGAAGAACAA
GCTGACTTTTTCGCACGCATCCGAGGTCAGCGTGTTCGAGACCACGATTC
GGGAGCTGGGAGGTCTGCTTTCGGCGTTTGACCTGTCGAAGGACGAGATC
TTCAAGACGAAG
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