mRNA_Ecto-sp13_S_contig85626.19970.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig85626.19970.1
Unique NamemRNA_Ecto-sp13_S_contig85626.19970.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig85626.19970.1 vs. uniprot
Match: A0A6H5KWE3_9PHAE (GCFC domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KWE3_9PHAE)

HSP 1 Score: 106 bits (264), Expect = 1.630e-25
Identity = 49/50 (98.00%), Postives = 50/50 (100.00%), Query Frame = 1 
Query:    1 DMAPFDMLMMWADLLPPLYMTSILDVEFFPKWLTVLHRWLSETADYAEVS 150
            DMAPFDMLMMWADLLPPLYMTSILDVEFFPKWLTVLHRWLSETADYAEV+
Sbjct:  428 DMAPFDMLMMWADLLPPLYMTSILDVEFFPKWLTVLHRWLSETADYAEVA 477
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BLAST of mRNA_Ecto-sp13_S_contig85626.19970.1 vs. uniprot
Match: D8LQD4_ECTSI (G-patch domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQD4_ECTSI)

HSP 1 Score: 106 bits (264), Expect = 1.670e-25
Identity = 49/50 (98.00%), Postives = 50/50 (100.00%), Query Frame = 1 
Query:    1 DMAPFDMLMMWADLLPPLYMTSILDVEFFPKWLTVLHRWLSETADYAEVS 150
            DMAPFDMLMMWADLLPPLYMTSILDVEFFPKWLTVLHRWLSETADYAEV+
Sbjct:  858 DMAPFDMLMMWADLLPPLYMTSILDVEFFPKWLTVLHRWLSETADYAEVA 907
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BLAST of mRNA_Ecto-sp13_S_contig85626.19970.1 vs. uniprot
Match: A0A7S3QTZ3_DUNTE (Hypothetical protein n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3QTZ3_DUNTE)

HSP 1 Score: 62.0 bits (149), Expect = 6.240e-10
Identity = 28/50 (56.00%), Postives = 36/50 (72.00%), Query Frame = 1 
Query:    1 DMAPFDMLMMWADLLPPLYMTSILDVEFFPKWLTVLHRWLSETADYAEVS 150
            DMAPF  +M W ++LP  +M ++LDV FFPKW  VLH WLS T +Y EV+
Sbjct:  655 DMAPFQWVMGWNEVLPHHHMAALLDVGFFPKWHQVLHYWLSHTPNYDEVT 704
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BLAST of mRNA_Ecto-sp13_S_contig85626.19970.1 vs. uniprot
Match: A0A7R9V8C2_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9V8C2_9CHLO)

HSP 1 Score: 58.9 bits (141), Expect = 4.470e-9
Identity = 27/50 (54.00%), Postives = 35/50 (70.00%), Query Frame = 1 
Query:    1 DMAPFDMLMMWADLLPPLYMTSILDVEFFPKWLTVLHRWLSETADYAEVS 150
            DMAPF+ +  WAD+L P  M S+L+V FFPKW  VL  WLS + +Y EV+
Sbjct:  169 DMAPFEWVTAWADVLAPAAMVSLLEVGFFPKWHAVLAYWLSASPNYDEVT 218
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BLAST of mRNA_Ecto-sp13_S_contig85626.19970.1 vs. uniprot
Match: A0A6A6VXZ7_9PEZI (G-patch domain-containing protein (Fragment) n=1 Tax=Pseudovirgaria hyperparasitica TaxID=470096 RepID=A0A6A6VXZ7_9PEZI)

HSP 1 Score: 57.0 bits (136), Expect = 3.640e-8
Identity = 23/50 (46.00%), Postives = 33/50 (66.00%), Query Frame = 1 
Query:    1 DMAPFDMLMMWADLLPPLYMTSILDVEFFPKWLTVLHRWLSETADYAEVS 150
            DMAP + ++ W  +  PL +  +L  EFFPKWL +LH WL+   +YAE+S
Sbjct:  503 DMAPLEHVLAWTPVFKPLVIAQLLLAEFFPKWLNILHLWLTAEPNYAEIS 552
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BLAST of mRNA_Ecto-sp13_S_contig85626.19970.1 vs. uniprot
Match: A0A7T8GL58_CALRO (Tuftelin interacting protein like n=1 Tax=Caligus rogercresseyi TaxID=217165 RepID=A0A7T8GL58_CALRO)

HSP 1 Score: 53.5 bits (127), Expect = 1.010e-7
Identity = 24/50 (48.00%), Postives = 33/50 (66.00%), Query Frame = 1 
Query:    1 DMAPFDMLMMWADLLPPLYMTSILDVEFFPKWLTVLHRWLSETADYAEVS 150
            D+AP++ +M W DLLP   +  +L+  FFPKWL VL  WL+   +Y EVS
Sbjct:    1 DLAPWNAVMEWVDLLPINVIVGLLEKHFFPKWLQVLASWLNHCPNYNEVS 50
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BLAST of mRNA_Ecto-sp13_S_contig85626.19970.1 vs. uniprot
Match: A0A0K2VA08_LEPSM (Tuftelininteracting protein 11like [Bombus terrestris] n=2 Tax=Lepeophtheirus salmonis TaxID=72036 RepID=A0A0K2VA08_LEPSM)

HSP 1 Score: 55.5 bits (132), Expect = 1.270e-7
Identity = 23/50 (46.00%), Postives = 34/50 (68.00%), Query Frame = 1 
Query:    1 DMAPFDMLMMWADLLPPLYMTSILDVEFFPKWLTVLHRWLSETADYAEVS 150
            D+AP++ +M W D+LPP  +  +L+  FFPKWL VL  WL+   +Y EV+
Sbjct:  629 DLAPWNAVMEWVDMLPPNVIVGLLEKHFFPKWLQVLATWLNHRPNYNEVT 678
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BLAST of mRNA_Ecto-sp13_S_contig85626.19970.1 vs. uniprot
Match: A0A165NTJ5_9APHY (TFP11-domain-containing protein n=1 Tax=Daedalea quercina L-15889 TaxID=1314783 RepID=A0A165NTJ5_9APHY)

HSP 1 Score: 54.3 bits (129), Expect = 3.260e-7
Identity = 23/40 (57.50%), Postives = 29/40 (72.50%), Query Frame = 1 
Query:    1 DMAPFDMLMMWADLLPPLYMTSILDVEFFPKWLTVLHRWL 120
            DMAP   +M+W +LL P  M+ +L+ EFFPKWL VLH WL
Sbjct:  478 DMAPLQDVMLWENLLSPTVMSRLLETEFFPKWLDVLHIWL 517
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BLAST of mRNA_Ecto-sp13_S_contig85626.19970.1 vs. uniprot
Match: A0A165EKR7_9APHY (TFP11-domain-containing protein n=1 Tax=Laetiporus sulphureus 93-53 TaxID=1314785 RepID=A0A165EKR7_9APHY)

HSP 1 Score: 54.3 bits (129), Expect = 3.260e-7
Identity = 24/40 (60.00%), Postives = 28/40 (70.00%), Query Frame = 1 
Query:    1 DMAPFDMLMMWADLLPPLYMTSILDVEFFPKWLTVLHRWL 120
            DMAP   +MMW  LL P  ++ IL+ EFFPKWL VLH WL
Sbjct:  748 DMAPLQDVMMWESLLSPSILSRILETEFFPKWLDVLHIWL 787
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BLAST of mRNA_Ecto-sp13_S_contig85626.19970.1 vs. uniprot
Match: S8EDB1_FOMPI (G-patch domain-containing protein n=1 Tax=Fomitopsis pinicola (strain FP-58527) TaxID=743788 RepID=S8EDB1_FOMPI)

HSP 1 Score: 53.9 bits (128), Expect = 4.470e-7
Identity = 25/48 (52.08%), Postives = 31/48 (64.58%), Query Frame = 1 
Query:    1 DMAPFDMLMMWADLLPPLYMTSILDVEFFPKWLTVLHRWLSETADYAE 144
            DMAP    M+W +LL P  M+ IL+ EFFPKWL VLH WL + +   E
Sbjct:  749 DMAPLQDAMLWENLLAPPVMSRILETEFFPKWLDVLHVWLIQPSPSLE 796
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig85626.19970.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KWE3_9PHAE1.630e-2598.00GCFC domain-containing protein n=1 Tax=Ectocarpus ... [more]
D8LQD4_ECTSI1.670e-2598.00G-patch domain-containing protein n=1 Tax=Ectocarp... [more]
A0A7S3QTZ3_DUNTE6.240e-1056.00Hypothetical protein n=1 Tax=Dunaliella tertiolect... [more]
A0A7R9V8C2_9CHLO4.470e-954.00Hypothetical protein (Fragment) n=1 Tax=Chlamydomo... [more]
A0A6A6VXZ7_9PEZI3.640e-846.00G-patch domain-containing protein (Fragment) n=1 T... [more]
A0A7T8GL58_CALRO1.010e-748.00Tuftelin interacting protein like n=1 Tax=Caligus ... [more]
A0A0K2VA08_LEPSM1.270e-746.00Tuftelininteracting protein 11like [Bombus terrest... [more]
A0A165NTJ5_9APHY3.260e-757.50TFP11-domain-containing protein n=1 Tax=Daedalea q... [more]
A0A165EKR7_9APHY3.260e-760.00TFP11-domain-containing protein n=1 Tax=Laetiporus... [more]
S8EDB1_FOMPI4.470e-752.08G-patch domain-containing protein n=1 Tax=Fomitops... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig85626contigEcto-sp13_S_contig85626:393..542 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score104.0
Seed ortholog evalue2e-20
Seed eggNOG ortholog2880.D8LQD4
Preferred nameTFIP11
Model size150
KEGG koko:K13103
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0000228,GO:0000375,GO:0000377,GO:0000390,GO:0000398,GO:0000723,GO:0000781,GO:0000784,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005681,GO:0005684,GO:0005694,GO:0005730,GO:0005737,GO:0006139,GO:0006259,GO:0006282,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0008150,GO:0008152,GO:0008380,GO:0009892,GO:0009987,GO:0010467,GO:0010605,GO:0016043,GO:0016070,GO:0016071,GO:0016233,GO:0016604,GO:0016607,GO:0019219,GO:0019222,GO:0022411,GO:0030154,GO:0030198,GO:0031012,GO:0031323,GO:0031324,GO:0031333,GO:0031848,GO:0031974,GO:0031981,GO:0032091,GO:0032200,GO:0032502,GO:0032984,GO:0032988,GO:0032991,GO:0033554,GO:0034641,GO:0042592,GO:0042752,GO:0043021,GO:0043062,GO:0043086,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043247,GO:0043254,GO:0043393,GO:0043933,GO:0044087,GO:0044092,GO:0044237,GO:0044238,GO:0044260,GO:0044421,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044877,GO:0045738,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0048583,GO:0048585,GO:0048869,GO:0050789,GO:0050790,GO:0050794,GO:0050896,GO:0051052,GO:0051053,GO:0051098,GO:0051100,GO:0051105,GO:0051107,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051276,GO:0051340,GO:0051352,GO:0051716,GO:0060249,GO:0060255,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070990,GO:0071008,GO:0071013,GO:0071014,GO:0071704,GO:0071826,GO:0071840,GO:0080090,GO:0080134,GO:0080135,GO:0090304,GO:0098687,GO:1901360,GO:1902494,GO:1904875,GO:1904876,GO:1990446,GO:1990904,GO:2000779,GO:2000780,GO:2001020,GO:2001021,GO:2001032,GO:2001033
Exons1
EggNOG free text desc.spliceosomal complex disassembly
EggNOG OGsKOG2184@1,KOG2184@2759
Cds size147
COG Functional cat.A
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03041
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464127.4293694-CDS-Ecto-sp13_S_contig85626:392..5391681464127.4293694-CDS-Ecto-sp13_S_contig85626:392..539Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig85626 393..539 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464127.443026-UTR-Ecto-sp13_S_contig85626:539..5421681464127.443026-UTR-Ecto-sp13_S_contig85626:539..542Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig85626 540..542 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig85626.19970.1prot_Ecto-sp13_S_contig85626.19970.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig85626 393..539 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig85626.19970.1

>prot_Ecto-sp13_S_contig85626.19970.1 ID=prot_Ecto-sp13_S_contig85626.19970.1|Name=mRNA_Ecto-sp13_S_contig85626.19970.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=49bp
MAPFDMLMMWADLLPPLYMTSILDVEFFPKWLTVLHRWLSETADYAEVS
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mRNA from alignment at Ecto-sp13_S_contig85626:393..542-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig85626.19970.1 ID=mRNA_Ecto-sp13_S_contig85626.19970.1|Name=mRNA_Ecto-sp13_S_contig85626.19970.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=150bp|location=Sequence derived from alignment at Ecto-sp13_S_contig85626:393..542- (Ectocarpus species13 EcNAP12_S_4_19m)
GACATGGCTCCCTTCGACATGCTCATGATGTGGGCAGACCTTCTACCGCC
GTTGTACATGACTAGCATCCTCGACGTGGAGTTCTTCCCCAAGTGGCTCA
CGGTTTTGCACCGCTGGCTCAGCGAAACAGCGGACTATGCCGAGGTTAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig85626:393..542-

>mRNA_Ecto-sp13_S_contig85626.19970.1 ID=mRNA_Ecto-sp13_S_contig85626.19970.1|Name=mRNA_Ecto-sp13_S_contig85626.19970.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=147bp|location=Sequence derived from alignment at Ecto-sp13_S_contig85626:393..542- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCTCCCTTCGACATGCTCATGATGTGGGCAGACCTTCTACCGCCGTT
GTACATGACTAGCATCCTCGACGTGGAGTTCTTCCCCAAGTGGCTCACGG
TTTTGCACCGCTGGCTCAGCGAAACAGCGGACTATGCCGAGGTTAGC
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