mRNA_Ecto-sp13_S_contig85324.19935.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig85324.19935.1
Unique NamemRNA_Ecto-sp13_S_contig85324.19935.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig85324.19935.1 vs. uniprot
Match: I2GUR8_TETBL (IPT/TIG domain-containing protein n=1 Tax=Tetrapisispora blattae (strain ATCC 34711 / CBS 6284 / DSM 70876 / NBRC 10599 / NRRL Y-10934 / UCD 77-7) TaxID=1071380 RepID=I2GUR8_TETBL)

HSP 1 Score: 55.1 bits (131), Expect = 4.690e-7
Identity = 25/54 (46.30%), Postives = 37/54 (68.52%), Query Frame = 1
Query:   46 VVTMLVQNGASVDSRDGFFYTPLHLACINGAVASVEALLRAGADPAIKAQQGVT 207
            +V+ L++NGA V+ +D F +TPLH AC+NG    ++ LL   AD +IKAQ  +T
Sbjct: 1013 LVSTLIKNGARVNDKDSFGFTPLHFACVNGNFKIIKILLSCNADYSIKAQNNIT 1066          
BLAST of mRNA_Ecto-sp13_S_contig85324.19935.1 vs. uniprot
Match: A0A1Z9C4U5_9BACT (Acyl_transf_3 domain-containing protein n=1 Tax=Opitutae bacterium TMED102 TaxID=1986876 RepID=A0A1Z9C4U5_9BACT)

HSP 1 Score: 53.9 bits (128), Expect = 1.170e-6
Identity = 26/53 (49.06%), Postives = 36/53 (67.92%), Query Frame = 1
Query:   22 PAHLLHTQVVTMLVQNGASVDSRDGFFYTPLHLACINGAVASVEALLRAGADP 180
            PA L     V +L++ G  V+ RD F  TPL++AC NGA+  ++ALL+AGADP
Sbjct:  501 PAKLRKYDAVGLLIEKGIDVNHRDKFGRTPLYMACRNGALGDIKALLKAGADP 553          
BLAST of mRNA_Ecto-sp13_S_contig85324.19935.1 vs. uniprot
Match: UPI0018CAEB57 (ankyrin repeat domain-containing protein n=1 Tax=unclassified Polaromonas TaxID=2638319 RepID=UPI0018CAEB57)

HSP 1 Score: 52.0 bits (123), Expect = 3.760e-6
Identity = 26/59 (44.07%), Postives = 40/59 (67.80%), Query Frame = 1
Query:   37 HTQVVTMLVQNGASVDSRDGFFYTPLHLACINGAVASVEALLRAGADPAIKAQQGVTPL 213
            HT ++ +L++N A +D+      TPL +A + G+ ASV+ LL+ GADP +K QQG+T L
Sbjct:  137 HTALIGLLLENNAYIDAESPNSSTPLMMAAMYGSEASVKLLLKEGADPRLKNQQGLTAL 195          
BLAST of mRNA_Ecto-sp13_S_contig85324.19935.1 vs. uniprot
Match: A0A6M5JK05_9SPHN (Ankyrin repeat domain-containing protein n=1 Tax=Sphingomonas sp. AP4-R1 TaxID=2735134 RepID=A0A6M5JK05_9SPHN)

HSP 1 Score: 51.2 bits (121), Expect = 5.100e-6
Identity = 27/52 (51.92%), Postives = 36/52 (69.23%), Query Frame = 1
Query:   25 AHLLHTQVVTMLVQNGASVDSRDGFFYTPLHLACINGAVASVEALLRAGADP 180
            A L  T ++ +LVQNGA V++ +   +TPL LA  NG  A+VEAL+ AGADP
Sbjct:   35 AKLGRTDLIPLLVQNGADVNAYEARGFTPLILAAYNGQAAAVEALIAAGADP 86          
BLAST of mRNA_Ecto-sp13_S_contig85324.19935.1 vs. uniprot
Match: A0A7H9B9M1_ZYGMR (IPT/TIG domain-containing protein n=1 Tax=Zygotorulaspora mrakii TaxID=42260 RepID=A0A7H9B9M1_ZYGMR)

HSP 1 Score: 50.1 bits (118), Expect = 2.730e-5
Identity = 22/57 (38.60%), Postives = 39/57 (68.42%), Query Frame = 1
Query:   37 HTQVVTMLVQNGASVDSRDGFFYTPLHLACINGAVASVEALLRAGADPAIKAQQGVT 207
            +  ++++L++NGA V+ RD + +TPLH AC+ G  + +  LL+  AD AI+A+  +T
Sbjct:  741 YQSLLSILIKNGARVNDRDLYGFTPLHFACVGGDASVIRLLLQCKADLAIRAKNDIT 797          
BLAST of mRNA_Ecto-sp13_S_contig85324.19935.1 vs. uniprot
Match: A0A2D7HLN5_9BACT (Uncharacterized protein n=1 Tax=Rhodopirellula sp. TaxID=2024855 RepID=A0A2D7HLN5_9BACT)

HSP 1 Score: 48.5 bits (114), Expect = 8.150e-5
Identity = 30/68 (44.12%), Postives = 41/68 (60.29%), Query Frame = 1
Query:   16 HVPAHLLHTQVVTMLVQNGASVDSRDGFFYTPLHLACINGAVASVEALLRAGADPAIKAQ-QGVTPLI 216
            H  A+  HT  V  L+Q GA++DSRD    TPL  AC      +V+AL++AGAD  +K   +G TPL+
Sbjct:  144 HHAAYNGHTATVLFLIQQGATLDSRDHEGKTPLIHACTGPFPETVQALIKAGADVNVKGTAEGFTPLM 211          
BLAST of mRNA_Ecto-sp13_S_contig85324.19935.1 vs. uniprot
Match: A0A4U8V4Q7_STECR (Uncharacterized protein n=2 Tax=Steinernema carpocapsae TaxID=34508 RepID=A0A4U8V4Q7_STECR)

HSP 1 Score: 48.5 bits (114), Expect = 9.350e-5
Identity = 21/47 (44.68%), Postives = 31/47 (65.96%), Query Frame = 1
Query:   31 LLHTQVVTMLVQNGASVDSRDGFFYTPLHLACINGAVASVEALLRAG 171
            +LH  ++++L+QNGA+VD+RD F YTPLH A +   V     L+  G
Sbjct:  191 ILHQTIISVLLQNGATVDARDNFNYTPLHYAALKDNVKEARELIEKG 237          
BLAST of mRNA_Ecto-sp13_S_contig85324.19935.1 vs. uniprot
Match: A0A7H9HSC9_9SACH (IPT/TIG domain-containing protein n=2 Tax=Torulaspora TaxID=4948 RepID=A0A7H9HSC9_9SACH)

HSP 1 Score: 48.5 bits (114), Expect = 9.550e-5
Identity = 23/57 (40.35%), Postives = 36/57 (63.16%), Query Frame = 1
Query:   37 HTQVVTMLVQNGASVDSRDGFFYTPLHLACINGAVASVEALLRAGADPAIKAQQGVT 207
            ++ + + L++NGA V+ +D + +TPLH AC+ G V  +  L    ADP+IKA   VT
Sbjct:  739 YSSLCSTLIKNGARVNDKDLYGFTPLHFACVGGDVRVIRLLAECKADPSIKACNFVT 795          
BLAST of mRNA_Ecto-sp13_S_contig85324.19935.1 vs. uniprot
Match: A0A4U8V627_STECR (Ion_trans domain-containing protein n=1 Tax=Steinernema carpocapsae TaxID=34508 RepID=A0A4U8V627_STECR)

HSP 1 Score: 48.5 bits (114), Expect = 9.580e-5
Identity = 21/47 (44.68%), Postives = 31/47 (65.96%), Query Frame = 1
Query:   31 LLHTQVVTMLVQNGASVDSRDGFFYTPLHLACINGAVASVEALLRAG 171
            +LH  ++++L+QNGA+VD+RD F YTPLH A +   V     L+  G
Sbjct:  170 ILHQTIISVLLQNGATVDARDNFNYTPLHYAALKDNVKEARELIEKG 216          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig85324.19935.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 9
Match NameE-valueIdentityDescription
I2GUR8_TETBL4.690e-746.30IPT/TIG domain-containing protein n=1 Tax=Tetrapis... [more]
A0A1Z9C4U5_9BACT1.170e-649.06Acyl_transf_3 domain-containing protein n=1 Tax=Op... [more]
UPI0018CAEB573.760e-644.07ankyrin repeat domain-containing protein n=1 Tax=u... [more]
A0A6M5JK05_9SPHN5.100e-651.92Ankyrin repeat domain-containing protein n=1 Tax=S... [more]
A0A7H9B9M1_ZYGMR2.730e-538.60IPT/TIG domain-containing protein n=1 Tax=Zygotoru... [more]
A0A2D7HLN5_9BACT8.150e-544.12Uncharacterized protein n=1 Tax=Rhodopirellula sp.... [more]
A0A4U8V4Q7_STECR9.350e-544.68Uncharacterized protein n=2 Tax=Steinernema carpoc... [more]
A0A7H9HSC9_9SACH9.550e-540.35IPT/TIG domain-containing protein n=2 Tax=Torulasp... [more]
A0A4U8V627_STECR9.580e-544.68Ion_trans domain-containing protein n=1 Tax=Steine... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig85324contigEcto-sp13_S_contig85324:152..370 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size219
Hectar predicted targeting categoryother localisation
Exons1
Cds size219
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464123.800468-CDS-Ecto-sp13_S_contig85324:151..3701681464123.800468-CDS-Ecto-sp13_S_contig85324:151..370Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig85324 152..370 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig85324.19935.1prot_Ecto-sp13_S_contig85324.19935.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig85324 152..370 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig85324.19935.1

>prot_Ecto-sp13_S_contig85324.19935.1 ID=prot_Ecto-sp13_S_contig85324.19935.1|Name=mRNA_Ecto-sp13_S_contig85324.19935.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=73bp
TNKHTHVPAHLLHTQVVTMLVQNGASVDSRDGFFYTPLHLACINGAVASV
EALLRAGADPAIKAQQGVTPLIA
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mRNA from alignment at Ecto-sp13_S_contig85324:152..370-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig85324.19935.1 ID=mRNA_Ecto-sp13_S_contig85324.19935.1|Name=mRNA_Ecto-sp13_S_contig85324.19935.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=219bp|location=Sequence derived from alignment at Ecto-sp13_S_contig85324:152..370- (Ectocarpus species13 EcNAP12_S_4_19m)
ACAAATAAACACACACACGTGCCCGCACACCTACTACACACCCAGGTGGT GACGATGCTGGTGCAAAACGGCGCCAGCGTCGACTCGAGGGACGGTTTTT TCTACACCCCGCTCCACCTCGCCTGCATCAATGGCGCAGTGGCCAGCGTG GAAGCCCTCCTCCGCGCCGGCGCCGACCCGGCCATCAAGGCGCAGCAGGG CGTAACGCCGCTCATCGCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig85324:152..370-

>mRNA_Ecto-sp13_S_contig85324.19935.1 ID=mRNA_Ecto-sp13_S_contig85324.19935.1|Name=mRNA_Ecto-sp13_S_contig85324.19935.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=219bp|location=Sequence derived from alignment at Ecto-sp13_S_contig85324:152..370- (Ectocarpus species13 EcNAP12_S_4_19m)
ACAAATAAACACACACACGTGCCCGCACACCTACTACACACCCAGGTGGT
GACGATGCTGGTGCAAAACGGCGCCAGCGTCGACTCGAGGGACGGTTTTT
TCTACACCCCGCTCCACCTCGCCTGCATCAATGGCGCAGTGGCCAGCGTG
GAAGCCCTCCTCCGCGCCGGCGCCGACCCGGCCATCAAGGCGCAGCAGGG
CGTAACGCCGCTCATCGCC
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