mRNA_Ecto-sp13_S_contig8515.19915.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8515.19915.1
Unique NamemRNA_Ecto-sp13_S_contig8515.19915.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8515.19915.1 vs. uniprot
Match: D7FYR8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYR8_ECTSI)

HSP 1 Score: 52.4 bits (124), Expect = 3.550e-7
Identity = 31/49 (63.27%), Postives = 36/49 (73.47%), Query Frame = 1 
Query:    1 MHVGAN-QERAAFERSSAISGDMVSDMNRNSSRRRRGKASCFRRGENKS 144
            MHVGAN Q +AAFERSSAISGDM   +     RR +G +SC RRGE+KS
Sbjct:    1 MHVGANKQAKAAFERSSAISGDMCVQIRTQRRRRGKGNSSCLRRGEDKS 49
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8515.19915.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FYR8_ECTSI3.550e-763.27Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8515contigEcto-sp13_S_contig8515:496..1442 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size232
Hectar predicted targeting categoryother localisation
Exons2
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-19_002250.1
Cds size231
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464122.0710378-CDS-Ecto-sp13_S_contig8515:495..6311681464122.0710378-CDS-Ecto-sp13_S_contig8515:495..631Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8515 496..631 -
1681464122.0805278-CDS-Ecto-sp13_S_contig8515:1347..14421681464122.0805278-CDS-Ecto-sp13_S_contig8515:1347..1442Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8515 1348..1442 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8515.19915.1prot_Ecto-sp13_S_contig8515.19915.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8515 496..1442 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8515.19915.1

>prot_Ecto-sp13_S_contig8515.19915.1 ID=prot_Ecto-sp13_S_contig8515.19915.1|Name=mRNA_Ecto-sp13_S_contig8515.19915.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=77bp
MHVGANQERAAFERSSAISGDMVSDMNRNSSRRRRGKASCFRRGENKSDS
SRQKRTDRQRRDAEGGPSRVYSSSTSS
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mRNA from alignment at Ecto-sp13_S_contig8515:496..1442-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8515.19915.1 ID=mRNA_Ecto-sp13_S_contig8515.19915.1|Name=mRNA_Ecto-sp13_S_contig8515.19915.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=947bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8515:496..1442- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCACGTTGGAGCAAACCAAGAGAGGGCTGCCTTCGAGCGTTCGAGTGC
AATCAGCGGGGACATGGTGAGTGACATGAATAGGAACAGCAGTAGGTCAT
GATGAGTATTTGCCTGCGGCACACTTGCTTTTCTACCAACGCAGCATGGC
AGCGCCGCCTCCCGCGCCGTTACTCCAGGTGCTTTCTACACAGCAGAAGT
ACACAAGGTTCGAAAATATACAAAAATCCAACCGAAGCCAAAGCTGCTCT
TCACACACAGCTGAAGCTGCGCTGTATATCTGGACCTCCGCCCCCATCCA
TGCTGCCAATTGCTCCGCACGATGTCGATGCGGTGTCCTTGAACTTGCTC
TTCTGCTTGCTGCCTCGCGTGCCTCCATCCTAACGTCTGTCTGTCGAACA
CCCGCGTTCGACAGATGCTGGCTTGCTTTTTCTTTTCTCTTCACAAGTCG
CTGCATCTTCTACACACTACAGTTGTGTCTGCGTGCCCGAGGTGTTGTTT
GGTCTGATGAGTTTTTTGTCTTTCCGCCAAGGGCATACCTGTGTGTCAGG
CGAGGTCTCAAAAGCCCTTCTCGGCTCTTACTGCTTGCTCTCTCTTGATT
CGGTCTCGGCCTCTTCCAGCAACTAGTGTAGAAAGCAACAGCAGCATCCA
ACAGTAGCCGCTTTTATTACAAGTGTCGTAGTAGCCCCCCCCCCCATCTG
TGCTCCTCCCCTTCTCCTCTCTCATTTCCTCGCTCTGACTCTCTTTCTGC
TCTCCCTCTCGCTTGGCTATGTATGTATGTGTGTGCGTTCAAAGTCGCAC
ACACGGCAGAGGCGGCGAAGAGGAAAAGCTTCCTGTTTCAGAAGGGGGGA
AAACAAGTCGGACAGCAGTAGACAAAAACGCACCGACAGACAGCGGAGAG
ACGCGGAGGGAGGGCCCTCTCGTGTGTACAGCAGCAGCACATCATCA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8515:496..1442-

>mRNA_Ecto-sp13_S_contig8515.19915.1 ID=mRNA_Ecto-sp13_S_contig8515.19915.1|Name=mRNA_Ecto-sp13_S_contig8515.19915.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=231bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8515:496..1442- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCACGTTGGAGCAAACCAAGAGAGGGCTGCCTTCGAGCGTTCGAGTGC
AATCAGCGGGGACATGGTGAGTGACATGAATAGGAACAGCAGTAGGCGGC
GAAGAGGAAAAGCTTCCTGTTTCAGAAGGGGGGAAAACAAGTCGGACAGC
AGTAGACAAAAACGCACCGACAGACAGCGGAGAGACGCGGAGGGAGGGCC
CTCTCGTGTGTACAGCAGCAGCACATCATCA
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