mRNA_Ecto-sp13_S_contig8450.19831.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8450.19831.1
Unique NamemRNA_Ecto-sp13_S_contig8450.19831.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8450.19831.1 vs. uniprot
Match: D7FLL2_ECTSI (EF-hand domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLL2_ECTSI)

HSP 1 Score: 209 bits (533), Expect = 5.620e-62
Identity = 119/137 (86.86%), Postives = 124/137 (90.51%), Query Frame = 3 
Query:    3 RRRKKESRVDSPLAAAARAAAVYELPALRETAATKRRSHQARDLVAGSGERGGRPASAGGSHSPKARQCRREMGQAAAAARAVAGVAAYGGHQAGSPSTTPHANAY-VVEDTHDHHHSPRAFHDHRTAPKIKRATHS 410
            RR+KKESRVDSPLAAAARAAAVYELPALRETAATK+RSH ARDLVAGS ERGGRPASAGGSHSP ARQ RRE GQAAAAARAVAGVAA GGH+A SPSTTPHANA  VV DTH+HHHSPRAFHDHRT P+  RATHS
Sbjct:  453 RRQKKESRVDSPLAAAARAAAVYELPALRETAATKQRSHHARDLVAGSRERGGRPASAGGSHSPNARQRRRETGQAAAAARAVAGVAACGGHKAESPSTTPHANANNVVRDTHEHHHSPRAFHDHRTVPENNRATHS 589
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BLAST of mRNA_Ecto-sp13_S_contig8450.19831.1 vs. uniprot
Match: A0A6H5KR14_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KR14_9PHAE)

HSP 1 Score: 149 bits (375), Expect = 7.210e-39
Identity = 91/137 (66.42%), Postives = 95/137 (69.34%), Query Frame = 3 
Query:    3 RRRKKESRVDSPLAAAARAAAVYELPALRETAATKRRSHQARDLVAGSGERGGRPASAGGSHSPKARQCRREMGQAAAAARAVAGVAAYGGHQAGSPSTTPHAN-AYVVEDTHDHHHSPRAFHDHRTAPKIKRATHS 410
            RR KKESRVDSPLAAAARAAAVYELPALR+TAATKRRSHQARDLVAGSG RGGRPASAGG+HSP A                               STTPHAN A V  DTH+HHHS R FHDHRT PK+KR THS
Sbjct:  515 RRLKKESRVDSPLAAAARAAAVYELPALRDTAATKRRSHQARDLVAGSGGRGGRPASAGGNHSPNAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTTPHANIANVFRDTHEHHHSLRTFHDHRTVPKLKRVTHS 651
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8450.19831.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FLL2_ECTSI5.620e-6286.86EF-hand domain-containing protein n=1 Tax=Ectocarp... [more]
A0A6H5KR14_9PHAE7.210e-3966.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8450contigEcto-sp13_S_contig8450:5212..6641 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start0
Model size490
Hectar predicted targeting categoryother localisation
Exons2
Cds size489
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464114.5866818-CDS-Ecto-sp13_S_contig8450:5212..55791681464114.5866818-CDS-Ecto-sp13_S_contig8450:5212..5579Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8450 5213..5579 -
1681464114.597981-CDS-Ecto-sp13_S_contig8450:6519..66411681464114.597981-CDS-Ecto-sp13_S_contig8450:6519..6641Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8450 6520..6641 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8450.19831.1prot_Ecto-sp13_S_contig8450.19831.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8450 5213..6641 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8450.19831.1

>prot_Ecto-sp13_S_contig8450.19831.1 ID=prot_Ecto-sp13_S_contig8450.19831.1|Name=mRNA_Ecto-sp13_S_contig8450.19831.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=163bp
ADGGRKNRAWILRWQPRRERRQCTSFPLSERQPPRSEEVTRPATWLPAVG
NAEGDRHPRAAATLPKPDNVGGRWARPPPPLGPSQALPLMVATKLGHRRQ
HRTLMLTSLKTRTTTIIARVLFMTIGPRQKSNEPPIASGARLADCARVDL
QPCSQAKLTANPD
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mRNA from alignment at Ecto-sp13_S_contig8450:5212..6641-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8450.19831.1 ID=mRNA_Ecto-sp13_S_contig8450.19831.1|Name=mRNA_Ecto-sp13_S_contig8450.19831.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1430bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8450:5212..6641- (Ectocarpus species13 EcNAP12_S_4_19m)
GCAGACGGCGGAAGAAAGAATCGCGCGTGGATTCTCCGTTGGCAGCCGCG
GCGCGAGCGGCGGCAGTGTACGAGCTTCCCGCTCTCAGAGAGACAGCCGC
CACGAAGCGAAGAAGTCACCAGGTGAGCCGCTTTTTCGGCACATCATGTG
AGCCGCTTTTTCGGCACATCATGTGCAGCAGCCGAGTGTCTTGGGAGTGT
GACAATGGTGGCAACATCATGATACCTGGTAACGTACGAGTACGCTGTGC
TGCCACACTTCTATAACGTGGTCCTCTGTGCACAGTCTTGTCTTGGTTTT
TCGTACCAAAAGGGGAGTGACTGCCGCGTGCGATAAGATGCATGCGCAAT
TGCAGGAGACCGGGCGGGAAGGCACCAGACACCATCCTTGCCTGCGAAGA
ATCAGGGGTTGGAACTCGAGAACGTGGCCACCGTATCCCCCGCCCCCCCT
CTGTTGCCCAAGTTGCAAGTCGATGTCTACCATGAAGCATCACATCCTTC
ACCCTTCTTGAAAGTCGCCGAACATTCATGCTACCGTTTGTGTGTCGTGA
AATAAATAGTGGCGCTGGTCTCGCGCAGAAAGCAGAGTGCGAGGAGGGTG
GTGAACAACGGCGATGCATGAAAGTGCCGTCAAGGGCGTATACCCCGCCC
GTTCGCCCTCTCCCGGTGATCAGCAACGTGTTCTTTGCTCATGCCAGTAT
ATTGAAAGCATGTTTGGAGTATTTGTTGCATGCGGTCCGTTTTCTGTAGT
GGGGACGGTGATCCCGTCGTTTCGTAAGGGATGTGACACGGACAATGACA
GGAGGACGATGTACCTCGAGCGAGTCTGGCTGATAAGCAAGGCGCACAAA
CCGACCTACGGTTTACGCACTACCATTTCTGCGACAGCCGCACGGGCAAG
GCTCGGCAATCCGCGTTGAAAAAATGTTTTCCGTGGACCGGACAACATAT
ATAAGACTAAAAGATGGGAAGGATGCGTGATTGCACAGTCTTAATAGCAA
GTAGAATAAGAAGGCGGCTACTTCCGTGCGCCCCTCCCGTTCCGGCGTTT
TGAATATCCCAGGCCCGCGACCTGGTTGCCGGCAGTGGGGAACGCGGAGG
GAGACCGGCATCCGCGGGCGGCAGCCACTCTCCCAAAGCCCGACAATGTC
GGCGGGAGATGGGCCAGGCCGCCGCCGCCGCTAGGGCCGTCGCAGGCGTT
GCCGCTTATGGTGGCCACCAAGCTGGGTCACCGTCGACAACACCGCACGC
TAATGCTTACGTCGTTGAAGACACGCACGACCACCATCATAGCCCGCGTG
CTTTTCATGACCATAGGACCGCGCCAAAAATCAAACGAGCCACCCATAGC
TAGCGGTGCGCGCCTAGCTGATTGTGCGCGTGTTGACCTCCAACCGTGTT
CCCAGGCAAAGTTAACGGCGAACCCCGACA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8450:5212..6641-

>mRNA_Ecto-sp13_S_contig8450.19831.1 ID=mRNA_Ecto-sp13_S_contig8450.19831.1|Name=mRNA_Ecto-sp13_S_contig8450.19831.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=489bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8450:5212..6641- (Ectocarpus species13 EcNAP12_S_4_19m)
GCAGACGGCGGAAGAAAGAATCGCGCGTGGATTCTCCGTTGGCAGCCGCG
GCGCGAGCGGCGGCAGTGTACGAGCTTCCCGCTCTCAGAGAGACAGCCGC
CACGAAGCGAAGAAGTCACCAGGCCCGCGACCTGGTTGCCGGCAGTGGGG
AACGCGGAGGGAGACCGGCATCCGCGGGCGGCAGCCACTCTCCCAAAGCC
CGACAATGTCGGCGGGAGATGGGCCAGGCCGCCGCCGCCGCTAGGGCCGT
CGCAGGCGTTGCCGCTTATGGTGGCCACCAAGCTGGGTCACCGTCGACAA
CACCGCACGCTAATGCTTACGTCGTTGAAGACACGCACGACCACCATCAT
AGCCCGCGTGCTTTTCATGACCATAGGACCGCGCCAAAAATCAAACGAGC
CACCCATAGCTAGCGGTGCGCGCCTAGCTGATTGTGCGCGTGTTGACCTC
CAACCGTGTTCCCAGGCAAAGTTAACGGCGAACCCCGAC
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