mRNA_Ecto-sp13_S_contig844.19821.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig844.19821.1
Unique NamemRNA_Ecto-sp13_S_contig844.19821.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig844.19821.1 vs. uniprot
Match: D7FZR7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZR7_ECTSI)

HSP 1 Score: 242 bits (618), Expect = 4.330e-76
Identity = 120/123 (97.56%), Postives = 121/123 (98.37%), Query Frame = 1 
Query:    1 VITATAKAIVVLLPDPEELVRTSRNGQVSQAEEAGAYEALVRCREWAFGRRAPPSWLAYGLDLLGAEIEGLEARLKQEGGGQFRKPEDLFVPTDFFEERETAIPPDVTLAQDEDLGGMLFHVF 369
            VITATAKAIVVLLPDPEELVRT RNGQVSQAEEAGAYEALVRCREWAFGRRAPPSWLAYGLDLLGAEIEGLEARLKQEGGGQFRKPE+ FVPTDFFEERETAIPPDVTLAQDEDLGGMLFHVF
Sbjct:  380 VITATAKAIVVLLPDPEELVRTFRNGQVSQAEEAGAYEALVRCREWAFGRRAPPSWLAYGLDLLGAEIEGLEARLKQEGGGQFRKPEEFFVPTDFFEERETAIPPDVTLAQDEDLGGMLFHVF 502
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig844.19821.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FZR7_ECTSI4.330e-7697.56Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig844contigEcto-sp13_S_contig844:15047..16133 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score244.6
Seed ortholog evalue2.5e-62
Seed eggNOG ortholog2880.D7FZR7
Model size372
Hectar predicted targeting categoryother localisation
Exons2
EggNOG OGs28NP6@1,2QV8V@2759
Cds size372
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464113.7622378-CDS-Ecto-sp13_S_contig844:15046..152101681464113.7622378-CDS-Ecto-sp13_S_contig844:15046..15210Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig844 15047..15210 -
1681464113.7750099-CDS-Ecto-sp13_S_contig844:15925..161331681464113.7750099-CDS-Ecto-sp13_S_contig844:15925..16133Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig844 15926..16133 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig844.19821.1prot_Ecto-sp13_S_contig844.19821.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig844 15047..16133 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig844.19821.1

>prot_Ecto-sp13_S_contig844.19821.1 ID=prot_Ecto-sp13_S_contig844.19821.1|Name=mRNA_Ecto-sp13_S_contig844.19821.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=124bp
VITATAKAIVVLLPDPEELVRTSRNGQVSQAEEAGAYEALVRCREWAFGR
RAPPSWLAYGLDLLGAEIEGLEARLKQEGGGQFRKPEDLFVPTDFFEERE
TAIPPDVTLAQDEDLGGMLFHVF*
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mRNA from alignment at Ecto-sp13_S_contig844:15047..16133-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig844.19821.1 ID=mRNA_Ecto-sp13_S_contig844.19821.1|Name=mRNA_Ecto-sp13_S_contig844.19821.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1087bp|location=Sequence derived from alignment at Ecto-sp13_S_contig844:15047..16133- (Ectocarpus species13 EcNAP12_S_4_19m)
GTAATAACGGCAACCGCGAAGGCCATCGTCGTGCTCCTTCCCGACCCGGA
GGAGCTGGTGCGGACGTCCCGAAACGGCCAGGTTTCCCAAGCGGAGGAGG
CGGGCGCGTACGAAGCCTTGGTGCGGTGCCGGGAGTGGGCGTTCGGACGG
AGGGCTCCACCGTCGTGGCTCGCGTACGGGCTTGACCTCCTCGGCGCCGA
AATCGAAGGTGGCGGCTTGGTCTAGCCGGTGTTACTACCGTGCGCACAAG
CAGTGTTCGTGTGTGCTTGCGCTTAGGTTTTTCAAGCCGCGAGCGCCACG
TAGAGCGGAAAAGCTCAGGCGTCAGGGTAGATGCCTCGGAACGTGTAGAA
TCAAAACGTTCTCCGTGCACGACGGCGAGCATAGAACAGTGGCGTGCTAC
ATTATACCGTAGACACCACACGGGTGTGTTGGGAGTGCATGAAATCACGT
CGATTCGGCCACGGGCGAGCACAACGACAGGGGGCAGATGGAGGAAACCA
GAAATGTCCGCACGTGTAAGAGGCACGGCAGGGGGAGGGATACGTGGAGG
GAGGCGGGGGGGGGAGAGGGAGAGGAAGAGACATATATTCAAGGGGCGGG
AGGGACAGAGATGGGGGGGGATAGCAGGAGTCAGAGGTAATTAGAACGGT
TGATGAAGAGCCGTCGTTAAACAAGCGTGTATCGAGGCAGCAGCGTTTGC
TGTACGCATGTATCACGAGTGGTACGATCACGGGTAGATCGCAGCCTGAT
TTGTCCCAAGACTACCTGCTACGAGACATCCACCTCAACGTGACACTAAA
TGTAGAAGCTACGCTGAAAGTATCAGATGTATCGGAGTGGAACACCAGGA
TGTCAGCCCGACATCCCGCCCATCTAGCTGCCCCAACACCGCCACCCTAC
CAACGTTTTTCCCAAAAAAACAGGGCTTGAAGCACGCCTTAAGCAGGAAG
GAGGAGGTCAATTCCGCAAACCGGAGGATTTGTTCGTGCCGACGGATTTC
TTCGAGGAGCGGGAGACGGCCATCCCTCCGGACGTGACGCTGGCCCAGGA
CGAGGATCTAGGGGGAATGCTATTTCACGTGTTTTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig844:15047..16133-

>mRNA_Ecto-sp13_S_contig844.19821.1 ID=mRNA_Ecto-sp13_S_contig844.19821.1|Name=mRNA_Ecto-sp13_S_contig844.19821.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=372bp|location=Sequence derived from alignment at Ecto-sp13_S_contig844:15047..16133- (Ectocarpus species13 EcNAP12_S_4_19m)
GTAATAACGGCAACCGCGAAGGCCATCGTCGTGCTCCTTCCCGACCCGGA
GGAGCTGGTGCGGACGTCCCGAAACGGCCAGGTTTCCCAAGCGGAGGAGG
CGGGCGCGTACGAAGCCTTGGTGCGGTGCCGGGAGTGGGCGTTCGGACGG
AGGGCTCCACCGTCGTGGCTCGCGTACGGGCTTGACCTCCTCGGCGCCGA
AATCGAAGGGCTTGAAGCACGCCTTAAGCAGGAAGGAGGAGGTCAATTCC
GCAAACCGGAGGATTTGTTCGTGCCGACGGATTTCTTCGAGGAGCGGGAG
ACGGCCATCCCTCCGGACGTGACGCTGGCCCAGGACGAGGATCTAGGGGG
AATGCTATTTCACGTGTTTTGA
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