mRNA_Ecto-sp13_S_contig8413.19787.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8413.19787.1
Unique NamemRNA_Ecto-sp13_S_contig8413.19787.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8413.19787.1 vs. uniprot
Match: D8LMD5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMD5_ECTSI)

HSP 1 Score: 72.0 bits (175), Expect = 1.020e-13
Identity = 28/30 (93.33%), Postives = 30/30 (100.00%), Query Frame = 1 
Query:   28 APQGPLPPNYVCRRCFKPGHFIQDCPTNSE 117
            APQGPLPPNYVCRRCFKPGHFIQDCPTN++
Sbjct:   46 APQGPLPPNYVCRRCFKPGHFIQDCPTNND 75
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BLAST of mRNA_Ecto-sp13_S_contig8413.19787.1 vs. uniprot
Match: A0A6H5L225_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L225_9PHAE)

HSP 1 Score: 68.9 bits (167), Expect = 1.320e-12
Identity = 27/30 (90.00%), Postives = 29/30 (96.67%), Query Frame = 1 
Query:   28 APQGPLPPNYVCRRCFKPGHFIQDCPTNSE 117
            APQGPLPPNYVCRRC KPGHFIQDCPTN++
Sbjct:   56 APQGPLPPNYVCRRCCKPGHFIQDCPTNND 85
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BLAST of mRNA_Ecto-sp13_S_contig8413.19787.1 vs. uniprot
Match: A0A6P8J698_ACTTE (E3 ubiquitin-protein ligase RBBP6-like n=1 Tax=Actinia tenebrosa TaxID=6105 RepID=A0A6P8J698_ACTTE)

HSP 1 Score: 58.5 bits (140), Expect = 6.320e-9
Identity = 26/35 (74.29%), Postives = 28/35 (80.00%), Query Frame = 1 
Query:    7 RGGGGGGAPQGPLPPNYVCRRCFKPGHFIQDCPTN 111
            RG G G  P GPLPPNYVC RC KPGHFI++CPTN
Sbjct:  173 RGRGRGYNPSGPLPPNYVCYRCGKPGHFIRNCPTN 207
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BLAST of mRNA_Ecto-sp13_S_contig8413.19787.1 vs. uniprot
Match: UPI000A2A509B (E3 ubiquitin-protein ligase RBBP6 n=1 Tax=Exaiptasia diaphana TaxID=2652724 RepID=UPI000A2A509B)

HSP 1 Score: 57.8 bits (138), Expect = 1.180e-8
Identity = 22/27 (81.48%), Postives = 24/27 (88.89%), Query Frame = 1 
Query:   31 PQGPLPPNYVCRRCFKPGHFIQDCPTN 111
            P GPLPPNYVC RC KPGHFI++CPTN
Sbjct:  157 PSGPLPPNYVCYRCGKPGHFIRNCPTN 183
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BLAST of mRNA_Ecto-sp13_S_contig8413.19787.1 vs. uniprot
Match: UPI0008113B46 (E3 ubiquitin-protein ligase RBBP6-like n=1 Tax=Rhagoletis zephyria TaxID=28612 RepID=UPI0008113B46)

HSP 1 Score: 56.6 bits (135), Expect = 3.030e-8
Identity = 21/28 (75.00%), Postives = 24/28 (85.71%), Query Frame = 1 
Query:   31 PQGPLPPNYVCRRCFKPGHFIQDCPTNS 114
            PQGPLPPNY C RC KPGH+I+ CPTN+
Sbjct:  143 PQGPLPPNYTCYRCGKPGHYIKHCPTNN 170
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BLAST of mRNA_Ecto-sp13_S_contig8413.19787.1 vs. uniprot
Match: UPI001F93D35A (E3 ubiquitin-protein ligase rbbp6, variant 2 n=3 Tax=Dermatophagoides farinae TaxID=6954 RepID=UPI001F93D35A)

HSP 1 Score: 55.8 bits (133), Expect = 5.630e-8
Identity = 21/28 (75.00%), Postives = 23/28 (82.14%), Query Frame = 1 
Query:   31 PQGPLPPNYVCRRCFKPGHFIQDCPTNS 114
            P GPLPPNY C RC KPGH+I+ CPTNS
Sbjct:  151 PMGPLPPNYTCYRCGKPGHYIKHCPTNS 178
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BLAST of mRNA_Ecto-sp13_S_contig8413.19787.1 vs. uniprot
Match: A0A6P6YGF2_DERPT (E3 ubiquitin-protein ligase RBBP6-like n=1 Tax=Dermatophagoides pteronyssinus TaxID=6956 RepID=A0A6P6YGF2_DERPT)

HSP 1 Score: 54.7 bits (130), Expect = 1.440e-7
Identity = 20/28 (71.43%), Postives = 23/28 (82.14%), Query Frame = 1 
Query:   31 PQGPLPPNYVCRRCFKPGHFIQDCPTNS 114
            P GPLPPNY C RC KPGH+I+ CPTN+
Sbjct:  151 PMGPLPPNYTCYRCGKPGHYIKHCPTNN 178
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BLAST of mRNA_Ecto-sp13_S_contig8413.19787.1 vs. uniprot
Match: A0A0H2SBL5_9AGAM (DWNN-domain-containing protein n=1 Tax=Schizopora paradoxa TaxID=27342 RepID=A0A0H2SBL5_9AGAM)

HSP 1 Score: 54.3 bits (129), Expect = 1.980e-7
Identity = 21/29 (72.41%), Postives = 25/29 (86.21%), Query Frame = 1 
Query:   31 PQGPLPPNYVCRRCFKPGHFIQDCPTNSE 117
            P+ PLPP+YVC RC K GH+IQDCPTNS+
Sbjct:  200 PERPLPPSYVCYRCGKKGHWIQDCPTNSD 228
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BLAST of mRNA_Ecto-sp13_S_contig8413.19787.1 vs. uniprot
Match: A0A8J5A744_9CHEL (E3 ubiquitin-protein ligase RBBP6 n=4 Tax=Nymphon striatum TaxID=424472 RepID=A0A8J5A744_9CHEL)

HSP 1 Score: 53.1 bits (126), Expect = 5.050e-7
Identity = 19/26 (73.08%), Postives = 24/26 (92.31%), Query Frame = 1 
Query:   37 GPLPPNYVCRRCFKPGHFIQDCPTNS 114
            GPLPPNY+C RC +PGH+I++CPTNS
Sbjct:  162 GPLPPNYLCYRCCRPGHWIKNCPTNS 187
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BLAST of mRNA_Ecto-sp13_S_contig8413.19787.1 vs. uniprot
Match: A0A8J5DGS4_9CHEL (E3 ubiquitin-protein ligase RBBP6 n=1 Tax=Nymphon striatum TaxID=424472 RepID=A0A8J5DGS4_9CHEL)

HSP 1 Score: 53.1 bits (126), Expect = 5.070e-7
Identity = 19/26 (73.08%), Postives = 24/26 (92.31%), Query Frame = 1 
Query:   37 GPLPPNYVCRRCFKPGHFIQDCPTNS 114
            GPLPPNY+C RC +PGH+I++CPTNS
Sbjct:  151 GPLPPNYLCYRCCRPGHWIKNCPTNS 176
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8413.19787.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMD5_ECTSI1.020e-1393.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L225_9PHAE1.320e-1290.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6P8J698_ACTTE6.320e-974.29E3 ubiquitin-protein ligase RBBP6-like n=1 Tax=Act... [more]
UPI000A2A509B1.180e-881.48E3 ubiquitin-protein ligase RBBP6 n=1 Tax=Exaiptas... [more]
UPI0008113B463.030e-875.00E3 ubiquitin-protein ligase RBBP6-like n=1 Tax=Rha... [more]
UPI001F93D35A5.630e-875.00E3 ubiquitin-protein ligase rbbp6, variant 2 n=3 T... [more]
A0A6P6YGF2_DERPT1.440e-771.43E3 ubiquitin-protein ligase RBBP6-like n=1 Tax=Der... [more]
A0A0H2SBL5_9AGAM1.980e-772.41DWNN-domain-containing protein n=1 Tax=Schizopora ... [more]
A0A8J5A744_9CHEL5.050e-773.08E3 ubiquitin-protein ligase RBBP6 n=4 Tax=Nymphon ... [more]
A0A8J5DGS4_9CHEL5.070e-773.08E3 ubiquitin-protein ligase RBBP6 n=1 Tax=Nymphon ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8413contigEcto-sp13_S_contig8413:91..207 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score74.3
Seed ortholog evalue1.4e-11
Seed eggNOG ortholog2880.D8LMD5
Model size117
KEGG koko:K10624,ko:K15541
KEGG Pathwayko03015,map03015
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.zinc ion binding
EggNOG OGsCOG5222@1,KOG0314@2759
EC2.3.2.27
Cds size117
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03019,ko04121
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464111.2851934-CDS-Ecto-sp13_S_contig8413:90..2071681464111.2851934-CDS-Ecto-sp13_S_contig8413:90..207Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8413 91..207 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8413.19787.1prot_Ecto-sp13_S_contig8413.19787.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8413 91..207 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8413.19787.1

>prot_Ecto-sp13_S_contig8413.19787.1 ID=prot_Ecto-sp13_S_contig8413.19787.1|Name=mRNA_Ecto-sp13_S_contig8413.19787.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=39bp
MGRGGGGGGAPQGPLPPNYVCRRCFKPGHFIQDCPTNSE
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mRNA from alignment at Ecto-sp13_S_contig8413:91..207-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8413.19787.1 ID=mRNA_Ecto-sp13_S_contig8413.19787.1|Name=mRNA_Ecto-sp13_S_contig8413.19787.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=117bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8413:91..207- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGAGGGGGGGGGGGGGGGGGGGGGCGCCGCAGGGCCCGCTGCCCCC
GAACTACGTGTGCCGGCGGTGCTTCAAGCCGGGGCACTTCATCCAGGACT
GTCCCACCAACAGTGAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8413:91..207-

>mRNA_Ecto-sp13_S_contig8413.19787.1 ID=mRNA_Ecto-sp13_S_contig8413.19787.1|Name=mRNA_Ecto-sp13_S_contig8413.19787.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=117bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8413:91..207- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGGGAGGGGGGGGGGGGGGGGGGGGGCGCCGCAGGGCCCGCTGCCCCC
GAACTACGTGTGCCGGCGGTGCTTCAAGCCGGGGCACTTCATCCAGGACT
GTCCCACCAACAGTGAG
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