mRNA_Ecto-sp13_S_contig84082.19782.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig84082.19782.1
Unique NamemRNA_Ecto-sp13_S_contig84082.19782.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
[Close]
BLAST of mRNA_Ecto-sp13_S_contig84082.19782.1 vs. uniprot
Match: D8LL91_ECTSI (NAD(P)H-hydrate epimerase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL91_ECTSI)

HSP 1 Score: 99.4 bits (246), Expect = 4.950e-24
Identity = 46/49 (93.88%), Postives = 48/49 (97.96%), Query Frame = 1 
Query:   31 GNYDVVLDAMFGFGFKGDPRPPFDSILKDLSKSDATPVVSVDVPSGWSV 177
            G+YDVVLDAMFGFGFKGDPRPPFD+ILKDLSKS ATPVVSVDVPSGWSV
Sbjct:  126 GSYDVVLDAMFGFGFKGDPRPPFDTILKDLSKSGATPVVSVDVPSGWSV 174
[Close]
BLAST of mRNA_Ecto-sp13_S_contig84082.19782.1 vs. uniprot
Match: A0A6H5KSM4_9PHAE (NAD(P)H-hydrate epimerase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KSM4_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 4.690e-23
Identity = 45/49 (91.84%), Postives = 48/49 (97.96%), Query Frame = 1 
Query:   31 GNYDVVLDAMFGFGFKGDPRPPFDSILKDLSKSDATPVVSVDVPSGWSV 177
            G++DVVLDAMFGFGFKGDPRPPFD+ILKDLSKS ATPVVSVDVPSGWSV
Sbjct:  173 GDFDVVLDAMFGFGFKGDPRPPFDTILKDLSKSGATPVVSVDVPSGWSV 221
[Close]
BLAST of mRNA_Ecto-sp13_S_contig84082.19782.1 vs. uniprot
Match: A0A7S3QWH0_DUNTE (NAD(P)H-hydrate epimerase n=1 Tax=Dunaliella tertiolecta TaxID=3047 RepID=A0A7S3QWH0_DUNTE)

HSP 1 Score: 77.4 bits (189), Expect = 4.610e-15
Identity = 36/48 (75.00%), Postives = 40/48 (83.33%), Query Frame = 1 
Query:   37 YDVVLDAMFGFGFKGDPRPPFDSILKDLSKSDATP-VVSVDVPSGWSV 177
            YDVVLDA+FGF FKGDPRPPFD ILK LS S+A P +VSVD PSGW +
Sbjct:  171 YDVVLDAIFGFSFKGDPRPPFDEILKALSPSNAPPPIVSVDAPSGWGI 218
[Close]
BLAST of mRNA_Ecto-sp13_S_contig84082.19782.1 vs. uniprot
Match: A0A388JMJ1_CHABU (YjeF N-terminal domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388JMJ1_CHABU)

HSP 1 Score: 71.6 bits (174), Expect = 7.200e-14
Identity = 36/67 (53.73%), Postives = 44/67 (65.67%), Query Frame = 1 
Query:    1 TTGTHVCMSSGNYDVVLDAMFGFGFKGDPRPPFDSILKDLS-KSDAT-------PVVSVDVPSGWSV 177
            T G      S +YD++LDA+FGF FKG PRPPFDS+LK L+   D T       P+VSVD+PSGW V
Sbjct:  107 TVGELTAPLSSDYDIILDAIFGFSFKGTPRPPFDSVLKMLAVPEDKTAADLGVPPIVSVDIPSGWDV 173
[Close]
BLAST of mRNA_Ecto-sp13_S_contig84082.19782.1 vs. uniprot
Match: A0A6G0XRF9_9STRA (NAD(P)H-hydrate epimerase n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0XRF9_9STRA)

HSP 1 Score: 70.9 bits (172), Expect = 3.000e-13
Identity = 31/47 (65.96%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:   37 YDVVLDAMFGFGFKGDPRPPFDSILKDLSKSDATPVVSVDVPSGWSV 177
            Y +VLD +FGF FKG PRPPFDSIL+ L+K+ A P+VS+D+PSGW V
Sbjct:  125 YSLVLDGIFGFSFKGAPRPPFDSILQTLTKTQA-PIVSIDIPSGWDV 170
[Close]
BLAST of mRNA_Ecto-sp13_S_contig84082.19782.1 vs. uniprot
Match: A0A7S0WQ09_9CHLO (NAD(P)H-hydrate epimerase n=2 Tax=Pyramimonas obovata TaxID=1411642 RepID=A0A7S0WQ09_9CHLO)

HSP 1 Score: 70.9 bits (172), Expect = 7.060e-13
Identity = 33/50 (66.00%), Postives = 39/50 (78.00%), Query Frame = 1 
Query:   31 GNYDVVLDAMFGFGFKGDPRPPFDSILKDLSK-SDATPVVSVDVPSGWSV 177
            G +DVVLDAMFGF FKGDPRPPF +IL  L   ++  P+VSVD+PSGW V
Sbjct:  218 GAFDVVLDAMFGFSFKGDPRPPFAAILNALKPPANPPPIVSVDIPSGWQV 267
[Close]
BLAST of mRNA_Ecto-sp13_S_contig84082.19782.1 vs. uniprot
Match: A0A2V0NT02_9CHLO (NAD(P)H-hydrate epimerase n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0NT02_9CHLO)

HSP 1 Score: 70.5 bits (171), Expect = 1.280e-12
Identity = 31/50 (62.00%), Postives = 40/50 (80.00%), Query Frame = 1 
Query:   37 YDVVLDAMFGFGFKGDPRPPFDSILKDLS-KSDATPVVSVDVPSGWSVSA 183
            +DVVLDA+FGF FKG PRPPFD++L+ L  ++   P+VSVD+PSGW V A
Sbjct:  154 FDVVLDALFGFSFKGQPRPPFDAVLQALKPEASPPPIVSVDIPSGWDVEA 203
[Close]
BLAST of mRNA_Ecto-sp13_S_contig84082.19782.1 vs. uniprot
Match: D8M907_BLAHO (YjeF N-terminal domain-containing protein n=1 Tax=Blastocystis hominis TaxID=12968 RepID=D8M907_BLAHO)

HSP 1 Score: 68.9 bits (167), Expect = 1.350e-12
Identity = 31/48 (64.58%), Postives = 38/48 (79.17%), Query Frame = 1 
Query:   34 NYDVVLDAMFGFGFKGDPRPPFDSILKDLSKSDATPVVSVDVPSGWSV 177
            NYD+V+DA+FGF F G PRPPFDSI+  L++    PVVSVD+PSGW V
Sbjct:  112 NYDLVVDAIFGFSFHGSPRPPFDSIISILNEC-GKPVVSVDIPSGWDV 158
[Close]
BLAST of mRNA_Ecto-sp13_S_contig84082.19782.1 vs. uniprot
Match: F0YIG6_AURAN (NAD(P)H-hydrate epimerase n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YIG6_AURAN)

HSP 1 Score: 68.9 bits (167), Expect = 1.520e-12
Identity = 31/47 (65.96%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:   37 YDVVLDAMFGFGFKGDPRPPFDSILKDLSKSDATPVVSVDVPSGWSV 177
            +DVVLDA+FGF F G+PR PFD IL+DL ++ +TP+VSVD PSGW V
Sbjct:  123 FDVVLDAVFGFSFYGEPRAPFDEILRDLERT-STPLVSVDTPSGWHV 168
[Close]
BLAST of mRNA_Ecto-sp13_S_contig84082.19782.1 vs. uniprot
Match: A0A397DPT1_9STRA (YjeF N-terminal domain-containing protein n=5 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397DPT1_9STRA)

HSP 1 Score: 67.8 bits (164), Expect = 2.110e-12
Identity = 30/47 (63.83%), Postives = 39/47 (82.98%), Query Frame = 1 
Query:   37 YDVVLDAMFGFGFKGDPRPPFDSILKDLSKSDATPVVSVDVPSGWSV 177
            Y +VLD +FGF F+G PRPPFD+IL  L++S +TPVVS+D+PSGW V
Sbjct:  102 YGLVLDGIFGFSFRGPPRPPFDNILTLLARS-STPVVSIDIPSGWDV 147
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig84082.19782.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LL91_ECTSI4.950e-2493.88NAD(P)H-hydrate epimerase n=1 Tax=Ectocarpus silic... [more]
A0A6H5KSM4_9PHAE4.690e-2391.84NAD(P)H-hydrate epimerase n=1 Tax=Ectocarpus sp. C... [more]
A0A7S3QWH0_DUNTE4.610e-1575.00NAD(P)H-hydrate epimerase n=1 Tax=Dunaliella terti... [more]
A0A388JMJ1_CHABU7.200e-1453.73YjeF N-terminal domain-containing protein n=1 Tax=... [more]
A0A6G0XRF9_9STRA3.000e-1365.96NAD(P)H-hydrate epimerase n=1 Tax=Aphanomyces eute... [more]
A0A7S0WQ09_9CHLO7.060e-1366.00NAD(P)H-hydrate epimerase n=2 Tax=Pyramimonas obov... [more]
A0A2V0NT02_9CHLO1.280e-1262.00NAD(P)H-hydrate epimerase n=1 Tax=Raphidocelis sub... [more]
D8M907_BLAHO1.350e-1264.58YjeF N-terminal domain-containing protein n=1 Tax=... [more]
F0YIG6_AURAN1.520e-1265.96NAD(P)H-hydrate epimerase n=1 Tax=Aureococcus anop... [more]
A0A397DPT1_9STRA2.110e-1263.83YjeF N-terminal domain-containing protein n=5 Tax=... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig84082contigEcto-sp13_S_contig84082:86..283 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score100.1
Seed ortholog evalue3.6e-19
Seed eggNOG ortholog2880.D8LL91
Preferred nameAPOA1BP
Model size198
KEGG rclassRC00048,RC00116
KEGG koko:K00275,ko:K11353,ko:K17759
KEGG TC3.D.1.6
KEGG ReactionR00277,R00278,R01710,R01711
KEGG Pathwayko00190,ko00750,ko01100,ko01120,ko04714,ko04723,ko04932,ko05010,ko05012,ko05016,map00190,map00750,map01100,map01120,map04714,map04723,map04932,map05010,map05012,map05016
KEGG ModuleM00124,M00146
Hectar predicted targeting categoryno signal peptide or anchor
GOsGO:0003674,GO:0003824,GO:0004733,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005615,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0005739,GO:0005759,GO:0005829,GO:0005929,GO:0006081,GO:0006139,GO:0006725,GO:0006732,GO:0006733,GO:0006734,GO:0006739,GO:0006753,GO:0006766,GO:0006767,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009110,GO:0009117,GO:0009165,GO:0009435,GO:0009507,GO:0009536,GO:0009987,GO:0016043,GO:0016491,GO:0016638,GO:0016641,GO:0016853,GO:0016854,GO:0017144,GO:0018130,GO:0019359,GO:0019362,GO:0019363,GO:0019438,GO:0019637,GO:0019674,GO:0022607,GO:0031974,GO:0031981,GO:0034356,GO:0034641,GO:0034654,GO:0042364,GO:0042802,GO:0042803,GO:0042816,GO:0042819,GO:0042822,GO:0042823,GO:0042995,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044283,GO:0044297,GO:0044421,GO:0044422,GO:0044424,GO:0044428,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0046184,GO:0046483,GO:0046496,GO:0046983,GO:0051186,GO:0051188,GO:0051259,GO:0051260,GO:0051262,GO:0051289,GO:0052856,GO:0052857,GO:0055086,GO:0055114,GO:0065003,GO:0070013,GO:0071704,GO:0071840,GO:0072524,GO:0072525,GO:0090407,GO:0120025,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615,GO:1901617
Exons1
EggNOG free text desc.NADPHX epimerase activity
EggNOG OGsCOG0062@1,KOG2585@2759
EC1.4.3.5,5.1.99.6
Cds size177
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464110.8638902-CDS-Ecto-sp13_S_contig84082:85..2621681464110.8638902-CDS-Ecto-sp13_S_contig84082:85..262Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig84082 86..262 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464110.8759167-UTR-Ecto-sp13_S_contig84082:262..2831681464110.8759167-UTR-Ecto-sp13_S_contig84082:262..283Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig84082 263..283 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig84082.19782.1prot_Ecto-sp13_S_contig84082.19782.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig84082 86..262 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig84082.19782.1

>prot_Ecto-sp13_S_contig84082.19782.1 ID=prot_Ecto-sp13_S_contig84082.19782.1|Name=mRNA_Ecto-sp13_S_contig84082.19782.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=59bp
MSSGNYDVVLDAMFGFGFKGDPRPPFDSILKDLSKSDATPVVSVDVPSGW
SVSASASA*
back to top

mRNA from alignment at Ecto-sp13_S_contig84082:86..283-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig84082.19782.1 ID=mRNA_Ecto-sp13_S_contig84082.19782.1|Name=mRNA_Ecto-sp13_S_contig84082.19782.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=198bp|location=Sequence derived from alignment at Ecto-sp13_S_contig84082:86..283- (Ectocarpus species13 EcNAP12_S_4_19m)
ACGACTGGCACACATGTGTGCATGTCCTCAGGTAACTACGACGTGGTCCT
TGATGCCATGTTCGGCTTCGGCTTCAAGGGCGACCCGCGACCGCCTTTCG
ATAGCATCCTCAAGGACCTCTCGAAGAGCGACGCAACTCCCGTCGTTTCG
GTTGATGTGCCAAGCGGGTGGTCGGTGAGCGCGAGTGCTTCGGCGTGA
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig84082:86..283-

>mRNA_Ecto-sp13_S_contig84082.19782.1 ID=mRNA_Ecto-sp13_S_contig84082.19782.1|Name=mRNA_Ecto-sp13_S_contig84082.19782.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=177bp|location=Sequence derived from alignment at Ecto-sp13_S_contig84082:86..283- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGTCCTCAGGTAACTACGACGTGGTCCTTGATGCCATGTTCGGCTTCGG
CTTCAAGGGCGACCCGCGACCGCCTTTCGATAGCATCCTCAAGGACCTCT
CGAAGAGCGACGCAACTCCCGTCGTTTCGGTTGATGTGCCAAGCGGGTGG
TCGGTGAGCGCGAGTGCTTCGGCGTGA
back to top