mRNA_Ecto-sp13_S_contig83859.19752.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig83859.19752.1
Unique NamemRNA_Ecto-sp13_S_contig83859.19752.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig83859.19752.1 vs. uniprot
Match: D8LJ75_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJ75_ECTSI)

HSP 1 Score: 99.0 bits (245), Expect = 3.070e-23
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 1
Query:    1 SQKLKVPCAHAPALPPIDVDESVSPRACAEELGYTFLPCVLSNLHR 138
            SQKLKVPCAHAPALPPIDVDESVSPRACAEELGYTFLPCVLSNLHR
Sbjct:  216 SQKLKVPCAHAPALPPIDVDESVSPRACAEELGYTFLPCVLSNLHR 261          
BLAST of mRNA_Ecto-sp13_S_contig83859.19752.1 vs. uniprot
Match: A0A6H5JF81_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JF81_9PHAE)

HSP 1 Score: 99.0 bits (245), Expect = 5.410e-23
Identity = 46/46 (100.00%), Postives = 46/46 (100.00%), Query Frame = 1
Query:    1 SQKLKVPCAHAPALPPIDVDESVSPRACAEELGYTFLPCVLSNLHR 138
            SQKLKVPCAHAPALPPIDVDESVSPRACAEELGYTFLPCVLSNLHR
Sbjct:  319 SQKLKVPCAHAPALPPIDVDESVSPRACAEELGYTFLPCVLSNLHR 364          
BLAST of mRNA_Ecto-sp13_S_contig83859.19752.1 vs. uniprot
Match: A0A7S2DKW2_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DKW2_9STRA)

HSP 1 Score: 86.3 bits (212), Expect = 2.290e-19
Identity = 38/49 (77.55%), Postives = 44/49 (89.80%), Query Frame = 1
Query:    1 SQKLKVPCAHAPALPPIDVDESVSPRACAEELGYTFLPCVLSNLHRCEK 147
            + +L VPCAHAP+L P+DVDESVSPRACAEELGYTFLPCVL+NLHR  +
Sbjct:   81 TMELGVPCAHAPSLEPLDVDESVSPRACAEELGYTFLPCVLANLHRAPR 129          
BLAST of mRNA_Ecto-sp13_S_contig83859.19752.1 vs. uniprot
Match: A0A835ZBV7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZBV7_9STRA)

HSP 1 Score: 84.0 bits (206), Expect = 6.790e-18
Identity = 39/45 (86.67%), Postives = 41/45 (91.11%), Query Frame = 1
Query:    4 QKLKVPCAHAPALPPIDVDESVSPRACAEELGYTFLPCVLSNLHR 138
            Q+L VP AHAP LPPIDVDESVSPRACAEELGYTFL CVL+NLHR
Sbjct:  205 QELGVPAAHAPGLPPIDVDESVSPRACAEELGYTFLSCVLANLHR 249          
BLAST of mRNA_Ecto-sp13_S_contig83859.19752.1 vs. uniprot
Match: A0A7S1XGB2_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Erythrolobus australicus TaxID=1077150 RepID=A0A7S1XGB2_9RHOD)

HSP 1 Score: 77.0 bits (188), Expect = 6.540e-17
Identity = 34/46 (73.91%), Postives = 40/46 (86.96%), Query Frame = 1
Query:    1 SQKLKVPCAHAPALPPIDVDESVSPRACAEELGYTFLPCVLSNLHR 138
            S++L VPCAHAPALPP+  D+SVSP+ACAEELGYTFLPC+L  L R
Sbjct:   43 SRELAVPCAHAPALPPLAADKSVSPKACAEELGYTFLPCILVGLSR 88          
BLAST of mRNA_Ecto-sp13_S_contig83859.19752.1 vs. uniprot
Match: A0A7S4DDK1_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S4DDK1_HETAK)

HSP 1 Score: 78.6 bits (192), Expect = 9.090e-17
Identity = 33/48 (68.75%), Postives = 41/48 (85.42%), Query Frame = 1
Query:    4 QKLKVPCAHAPALPPIDVDESVSPRACAEELGYTFLPCVLSNLHRCEK 147
            Q+LK+PCAHAP L P+D D +V+PRACAEELG+TFLPCVL+NL R  +
Sbjct:   44 QELKIPCAHAPGLDPLDADPAVAPRACAEELGHTFLPCVLANLRRAPR 91          
BLAST of mRNA_Ecto-sp13_S_contig83859.19752.1 vs. uniprot
Match: A0A5J4YWI0_PORPP (Putative lipoprotein n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YWI0_PORPP)

HSP 1 Score: 81.3 bits (199), Expect = 9.160e-17
Identity = 36/49 (73.47%), Postives = 43/49 (87.76%), Query Frame = 1
Query:    1 SQKLKVPCAHAPALPPIDVDESVSPRACAEELGYTFLPCVLSNLHRCEK 147
            S+ L+VPCAHAPALPP+DVD+SVSP+A AEELGYTFLPCVL+ L R  +
Sbjct:  264 SRDLRVPCAHAPALPPLDVDDSVSPKAAAEELGYTFLPCVLAGLSRAPR 312          
BLAST of mRNA_Ecto-sp13_S_contig83859.19752.1 vs. uniprot
Match: A0A7S0T8P6_9RHOD (Hypothetical protein (Fragment) n=1 Tax=Erythrolobus madagascarensis TaxID=708628 RepID=A0A7S0T8P6_9RHOD)

HSP 1 Score: 75.5 bits (184), Expect = 2.390e-16
Identity = 34/46 (73.91%), Postives = 38/46 (82.61%), Query Frame = 1
Query:    1 SQKLKVPCAHAPALPPIDVDESVSPRACAEELGYTFLPCVLSNLHR 138
            S++L VPCAHAPALPP+D D  VSP+A AEELGYTFLPCVL  L R
Sbjct:   49 SRELNVPCAHAPALPPLDADSEVSPKAAAEELGYTFLPCVLVGLSR 94          
BLAST of mRNA_Ecto-sp13_S_contig83859.19752.1 vs. uniprot
Match: A0A7S3Y7S8_HETAK (Hypothetical protein n=2 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y7S8_HETAK)

HSP 1 Score: 78.6 bits (192), Expect = 8.720e-16
Identity = 33/48 (68.75%), Postives = 41/48 (85.42%), Query Frame = 1
Query:    4 QKLKVPCAHAPALPPIDVDESVSPRACAEELGYTFLPCVLSNLHRCEK 147
            Q+LK+PCAHAP L P+D D +V+PRACAEELG+TFLPCVL+NL R  +
Sbjct:  278 QELKIPCAHAPGLDPLDADPAVAPRACAEELGHTFLPCVLANLRRAPR 325          
BLAST of mRNA_Ecto-sp13_S_contig83859.19752.1 vs. uniprot
Match: A0A7S1ETB1_9RHOD (Hypothetical protein n=1 Tax=Timspurckia oligopyrenoides TaxID=708627 RepID=A0A7S1ETB1_9RHOD)

HSP 1 Score: 76.3 bits (186), Expect = 5.720e-15
Identity = 33/49 (67.35%), Postives = 41/49 (83.67%), Query Frame = 1
Query:    1 SQKLKVPCAHAPALPPIDVDESVSPRACAEELGYTFLPCVLSNLHRCEK 147
            +++L +PCAHAPALPP+D DE+VSP+A AEELGYTFLPCVL  L R  +
Sbjct:  270 TRELAIPCAHAPALPPLDADEAVSPKAAAEELGYTFLPCVLVGLSRAPQ 318          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig83859.19752.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LJ75_ECTSI3.070e-23100.00Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JF81_9PHAE5.410e-23100.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A7S2DKW2_9STRA2.290e-1977.55Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A835ZBV7_9STRA6.790e-1886.67Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1XGB2_9RHOD6.540e-1773.91Hypothetical protein (Fragment) n=1 Tax=Erythrolob... [more]
A0A7S4DDK1_HETAK9.090e-1768.75Hypothetical protein n=1 Tax=Heterosigma akashiwo ... [more]
A0A5J4YWI0_PORPP9.160e-1773.47Putative lipoprotein n=1 Tax=Porphyridium purpureu... [more]
A0A7S0T8P6_9RHOD2.390e-1673.91Hypothetical protein (Fragment) n=1 Tax=Erythrolob... [more]
A0A7S3Y7S8_HETAK8.720e-1668.75Hypothetical protein n=2 Tax=Heterosigma akashiwo ... [more]
A0A7S1ETB1_9RHOD5.720e-1567.35Hypothetical protein n=1 Tax=Timspurckia oligopyre... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig83859contigEcto-sp13_S_contig83859:60..212 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start0
Seed ortholog score98.6
Seed ortholog evalue9e-19
Seed eggNOG ortholog2880.D8LJ75
Model size153
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG free text desc.Protein of unknown function (DUF3326)
EggNOG OGs2CNAI@1,2QUTI@2759
Cds size153
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464108.5735958-CDS-Ecto-sp13_S_contig83859:59..2121681464108.5735958-CDS-Ecto-sp13_S_contig83859:59..212Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig83859 60..212 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig83859.19752.1prot_Ecto-sp13_S_contig83859.19752.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig83859 60..212 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig83859.19752.1

>prot_Ecto-sp13_S_contig83859.19752.1 ID=prot_Ecto-sp13_S_contig83859.19752.1|Name=mRNA_Ecto-sp13_S_contig83859.19752.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=51bp
SQKLKVPCAHAPALPPIDVDESVSPRACAEELGYTFLPCVLSNLHRCEKG
*
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mRNA from alignment at Ecto-sp13_S_contig83859:60..212+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig83859.19752.1 ID=mRNA_Ecto-sp13_S_contig83859.19752.1|Name=mRNA_Ecto-sp13_S_contig83859.19752.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=153bp|location=Sequence derived from alignment at Ecto-sp13_S_contig83859:60..212+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCGCAGAAGCTCAAGGTCCCCTGCGCGCACGCGCCAGCCCTGCCCCCGAT CGACGTTGACGAATCCGTCAGCCCTAGGGCTTGCGCTGAGGAGCTGGGTT ACACCTTTTTGCCGTGCGTGCTGTCCAACCTTCATAGGTGCGAGAAGGGT TAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig83859:60..212+

>mRNA_Ecto-sp13_S_contig83859.19752.1 ID=mRNA_Ecto-sp13_S_contig83859.19752.1|Name=mRNA_Ecto-sp13_S_contig83859.19752.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=153bp|location=Sequence derived from alignment at Ecto-sp13_S_contig83859:60..212+ (Ectocarpus species13 EcNAP12_S_4_19m)
TCGCAGAAGCTCAAGGTCCCCTGCGCGCACGCGCCAGCCCTGCCCCCGAT
CGACGTTGACGAATCCGTCAGCCCTAGGGCTTGCGCTGAGGAGCTGGGTT
ACACCTTTTTGCCGTGCGTGCTGTCCAACCTTCATAGGTGCGAGAAGGGT
TAA
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