mRNA_Ecto-sp13_S_contig83764.19745.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig83764.19745.1
Unique NamemRNA_Ecto-sp13_S_contig83764.19745.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig83764.19745.1 vs. uniprot
Match: D8LN30_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN30_ECTSI)

HSP 1 Score: 143 bits (360), Expect = 2.160e-41
Identity = 76/88 (86.36%), Postives = 80/88 (90.91%), Query Frame = 1 
Query:   40 AELHRTGAGLLPCGSAGHASAVVLRVFDDGCPEGSSNERDQRGLFEERRSSANGIVGAGVGASAASLAVGRSVLESAEAATDPLVEIG 303
            +ELHRTGAGLLPCGS GHASAVVLRVFDDG PEGSSNERDQ GLFEER SSANGI+GA VGASAA++AVGR VLESAEAA D LVEIG
Sbjct:   30 SELHRTGAGLLPCGSTGHASAVVLRVFDDGRPEGSSNERDQTGLFEERGSSANGILGARVGASAANVAVGRPVLESAEAAADSLVEIG 117
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BLAST of mRNA_Ecto-sp13_S_contig83764.19745.1 vs. uniprot
Match: D8LMK2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LMK2_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 2.210e-15
Identity = 41/50 (82.00%), Postives = 43/50 (86.00%), Query Frame = 2 
Query:   38 MPNSTGPGLVSYPAVALATLLL*CSEFLMTAAPKGPPTSATRGDFLKSAA 187
            MPNSTG  LVSY +VAL TLLL CS F MTAAPKGPPTSA+RGDFLKSAA
Sbjct:    1 MPNSTGSRLVSYASVALTTLLLRCSGFTMTAAPKGPPTSASRGDFLKSAA 50
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BLAST of mRNA_Ecto-sp13_S_contig83764.19745.1 vs. uniprot
Match: A0A6H5JK54_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JK54_9PHAE)

HSP 1 Score: 61.6 bits (148), Expect = 2.180e-10
Identity = 31/34 (91.18%), Postives = 31/34 (91.18%), Query Frame = 2 
Query:   38 MPNSTGPGLVSYPAVALATLLL*CSEFLMTAAPK 139
            MPNSTGPGLVSYPAVALA LLL CSE LMTAAPK
Sbjct:    1 MPNSTGPGLVSYPAVALAALLLGCSEVLMTAAPK 34
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig83764.19745.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D8LN30_ECTSI2.160e-4186.36Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LMK2_ECTSI2.210e-1582.00Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JK54_9PHAE2.180e-1091.18Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig83764contigEcto-sp13_S_contig83764:121..432 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start0
Model size313
Hectar predicted targeting categoryother localisation
Exons1
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-05_003260.1
Cds size312
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464108.1594014-CDS-Ecto-sp13_S_contig83764:120..4321681464108.1594014-CDS-Ecto-sp13_S_contig83764:120..432Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig83764 121..432 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig83764.19745.1prot_Ecto-sp13_S_contig83764.19745.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig83764 121..432 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig83764.19745.1

>prot_Ecto-sp13_S_contig83764.19745.1 ID=prot_Ecto-sp13_S_contig83764.19745.1|Name=mRNA_Ecto-sp13_S_contig83764.19745.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=104bp
TTQRIQQYTLPCHAELHRTGAGLLPCGSAGHASAVVLRVFDDGCPEGSSN
ERDQRGLFEERRSSANGIVGAGVGASAASLAVGRSVLESAEAATDPLVEI
GEA*
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mRNA from alignment at Ecto-sp13_S_contig83764:121..432-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig83764.19745.1 ID=mRNA_Ecto-sp13_S_contig83764.19745.1|Name=mRNA_Ecto-sp13_S_contig83764.19745.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=312bp|location=Sequence derived from alignment at Ecto-sp13_S_contig83764:121..432- (Ectocarpus species13 EcNAP12_S_4_19m)
ACGACCCAGCGAATCCAACAATATACACTGCCCTGCCATGCCGAACTCCA
CAGGACCGGGGCTGGTCTCCTACCCTGCGGTAGCGCTGGCCACGCTTCTG
CTGTAGTGCTCAGAGTTTTTGATGACGGCTGCCCCGAAGGGTCCTCCAAC
GAGCGCGACCAGAGGGGACTTTTTGAAGAGCGCCGCAGCTCAGCGAATGG
CATCGTTGGAGCCGGCGTGGGAGCATCGGCGGCTAGCCTTGCGGTTGGAC
GGTCGGTGTTGGAAAGCGCGGAAGCAGCGACGGATCCCTTGGTGGAGATA
GGTGAGGCCTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig83764:121..432-

>mRNA_Ecto-sp13_S_contig83764.19745.1 ID=mRNA_Ecto-sp13_S_contig83764.19745.1|Name=mRNA_Ecto-sp13_S_contig83764.19745.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=312bp|location=Sequence derived from alignment at Ecto-sp13_S_contig83764:121..432- (Ectocarpus species13 EcNAP12_S_4_19m)
ACGACCCAGCGAATCCAACAATATACACTGCCCTGCCATGCCGAACTCCA
CAGGACCGGGGCTGGTCTCCTACCCTGCGGTAGCGCTGGCCACGCTTCTG
CTGTAGTGCTCAGAGTTTTTGATGACGGCTGCCCCGAAGGGTCCTCCAAC
GAGCGCGACCAGAGGGGACTTTTTGAAGAGCGCCGCAGCTCAGCGAATGG
CATCGTTGGAGCCGGCGTGGGAGCATCGGCGGCTAGCCTTGCGGTTGGAC
GGTCGGTGTTGGAAAGCGCGGAAGCAGCGACGGATCCCTTGGTGGAGATA
GGTGAGGCCTAA
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