mRNA_Ecto-sp13_S_contig8360.19728.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m
|
Overview
Homology
BLAST of mRNA_Ecto-sp13_S_contig8360.19728.1 vs. uniprot
Match: D7G3K9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G3K9_ECTSI) HSP 1 Score: 375 bits (963), Expect = 1.100e-130 Identity = 187/189 (98.94%), Postives = 188/189 (99.47%), Query Frame = 1
Query: 1 FKRWRAPVKRDLVVWMYDVSKQGFGAMFIHVWNILLSIHEGGGIPGSDECAMYFVNFSLDIAIGTFMIWCFVRVQELTAVRCGIDSLKVTGDYGTPPLFSVYRTQLLAYTVILVICKAVTTAIVIAMDEVLSSLAKALFSPVSAYPELELTLVMIICPWILNALQFWILDNVLMSEKVVLDTRSGSFGK 567
FKRWRAPVKRDLVVWMYDVSKQGFGAMFIHVWNILLSIHEGGGIPGSDECAMYFVNFSLDIAIGTFMIWCFVRVQELTAVRCGIDSLKVTGDYGTPPLFSVYRTQLLAYTVILVICKAVTTAIVIAMDEVLSSLAKALFSPVSAYPELELTLVMIICPWILNALQFWILDNVLMSEKV+LD RSGSFGK
Sbjct: 44 FKRWRAPVKRDLVVWMYDVSKQGFGAMFIHVWNILLSIHEGGGIPGSDECAMYFVNFSLDIAIGTFMIWCFVRVQELTAVRCGIDSLKVTGDYGTPPLFSVYRTQLLAYTVILVICKAVTTAIVIAMDEVLSSLAKALFSPVSAYPELELTLVMIICPWILNALQFWILDNVLMSEKVMLDPRSGSFGK 232
BLAST of mRNA_Ecto-sp13_S_contig8360.19728.1 vs. uniprot
Match: A0A835YS54_9STRA (Vacuolar membrane protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YS54_9STRA) HSP 1 Score: 178 bits (451), Expect = 3.930e-52 Identity = 86/169 (50.89%), Postives = 117/169 (69.23%), Query Frame = 1
Query: 34 LVVWMYDVSKQGFGAMFIHVWNILLSI-------HEGGGIPGSDECAMYFVNFSLDIAIGTFMIWCFVRVQELTAVRCGIDSLKVTGDYGTPPLFSVYRTQLLAYTVILVICKAVTTAIVIAMDEVLSSLAKALFSPVSAYPELELTLVMIICPWILNALQFWILDNVL 519
L+VW+YDVSKQG+GA+F+H WNI++S+ D CA+YFV F LD+ +G MIW VR QE A RC + SL V+GDYG PP + QL AY + L+I K + + +V+A D +LS L+ LFSPV+ +P++ELT+VMI+CPWILNALQFWI+DN++
Sbjct: 32 LLVWIYDVSKQGYGALFVHFWNIVMSMILADLSRRANADAVERDACALYFVQFVLDMMLGMVMIWAMVRTQEWLAERCNVPSLAVSGDYGNPPKVQWFWHQLGAYMMSLLIIKTIISTVVVAEDRILSRLSTWLFSPVAKHPDVELTIVMIVCPWILNALQFWIMDNMV 200
BLAST of mRNA_Ecto-sp13_S_contig8360.19728.1 vs. uniprot
Match: A0A836CKC4_9STRA (Vacuolar membrane protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CKC4_9STRA) HSP 1 Score: 173 bits (438), Expect = 4.230e-51 Identity = 88/179 (49.16%), Postives = 118/179 (65.92%), Query Frame = 1
Query: 1 FKRWRAPVKRDLVVWMYDVSKQGFGAMFIHVWNILLSI-----HEGGGIPGSDECAMYFVNFSLDIAIGTFMIWCFVRVQELTAVRCGIDSLKVTGDYGTPPLFSVYRTQLLAYTVILVICKAVTTAIVIAMDEVLSSLAKALFSPVSAYPELELTLVMIICPWILNALQFWILDNVLM 522
+KR +R ++VW+YD SKQ GA +H WN+ LSI G SDECA+YFVN+++DI +GT +IW V+ Q A R G+ SL+ TG YG PP SVY QLLA+ ILVI K +VIA+D + +A+ LF P+ YP+LEL +VMI+CPW LN++QFWILD+V+M
Sbjct: 36 YKRLLENPRRPILVWLYDTSKQAIGAGLVHAWNMALSIAIAKLRRDQGDDASDECALYFVNYAVDILLGTGLIWGLVQAQVTMAKRLGVGSLRHTGFYGDPPRLSVYLAQLLAFMFILVIQKTALAFLVIALDGQIEVMAEFLFLPLQGYPDLELLIVMILCPWCLNSVQFWILDSVVM 214
BLAST of mRNA_Ecto-sp13_S_contig8360.19728.1 vs. uniprot
Match: A0A836CED2_9STRA (Vacuolar membrane protein-domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CED2_9STRA) HSP 1 Score: 167 bits (424), Expect = 3.320e-49 Identity = 82/174 (47.13%), Postives = 112/174 (64.37%), Query Frame = 1
Query: 25 KRDLVVWMYDVSKQGFGAMFIHVWNILLS----IHEGGGIPG------SDECAMYFVNFSLDIAIGTFMIWCFVRVQELTAVRCGIDSLKVTGDYGTPPLFSVYRTQLLAYTVILVICKAVTTAIVIAMDEVLSSLAKALFSPVSAYPELELTLVMIICPWILNALQFWILDNV 516
+R +VW YDVSKQG+ A+ +H WNI +S + G G DECA+YFV F+LD+ +G ++W +R QE A R SL ++GDYG PP F + Q+ Y + +V K V T +V+A D VLS ++ LF+PV +PE ELT+VMIICPWILNALQFW++DN+
Sbjct: 40 RRPFIVWWYDVSKQGYAALLVHAWNIFMSMALAVRTRGDAAGLGVAAPRDECALYFVQFALDVLLGVALVWVLIRTQERLARRYNWPSLAISGDYGNPPRFQWFVAQMGVYMLSVVAVKTVITLVVLAGDAVLSDVSAVLFAPVREFPEAELTIVMIICPWILNALQFWMMDNM 213
BLAST of mRNA_Ecto-sp13_S_contig8360.19728.1 vs. uniprot
Match: W2PXY3_PHYPN (Uncharacterized protein n=15 Tax=Phytophthora TaxID=4783 RepID=W2PXY3_PHYPN) HSP 1 Score: 144 bits (364), Expect = 3.040e-39 Identity = 74/184 (40.22%), Postives = 110/184 (59.78%), Query Frame = 1
Query: 1 FKRWRAPVKRDLVVWMYDVSKQGFGAMFIHVWNILLSIH--------EGGGIPGSDECAMYFVNFSLDIAIGTFMIWCFVRVQELTAVRCGIDSLKVTGDYGTPPLFSVYRTQLLAYTVILVICKAVTTAIVIAMDEVLSSLAKALFSPVSAYPELELTLVMIICPWILNALQFWILDNVLMSE 528
FKRWR +R L+VW +D SKQ GA F HV N+L++I E P D+CA+YFVNF+LD +G F+ + + L A+R SLK GDYGTP + Q++++ +++ CK + +++A + L + A LF P+ YP++EL +VMI CP ++NALQFW+ DN L +
Sbjct: 40 FKRWREVPRRPLMVWAFDASKQMVGATFAHVANLLIAIVLYSYQEELESDEEP-VDQCALYFVNFTLDTTLGVFLNYVLLSAVVLLALRFSWSSLKTPGDYGTPVRVRTWILQVISWIIVIFTCKFLIAVLIVAFQKPLGAFAVLLFKPLEEYPDVELAIVMIACPCLMNALQFWVQDNFLKKD 222
BLAST of mRNA_Ecto-sp13_S_contig8360.19728.1 vs. uniprot
Match: A0A2D4BU66_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BU66_PYTIN) HSP 1 Score: 144 bits (362), Expect = 6.500e-39 Identity = 71/182 (39.01%), Postives = 108/182 (59.34%), Query Frame = 1
Query: 4 KRWRAPVKRDLVVWMYDVSKQGFGAMFIHVWNILLSIH-------EGGGIPGSDECAMYFVNFSLDIAIGTFMIWCFVRVQELTAVRCGIDSLKVTGDYGTPPLFSVYRTQLLAYTVILVICKAVTTAIVIAMDEVLSSLAKALFSPVSAYPELELTLVMIICPWILNALQFWILDNVLMSE 528
KR+ +R + +W +D SKQ GA F HV N+L++I G G G D+CA YFVNF++D +G W F+ + AVR SL GDYG P S++ QL+++ I+ + K V +++A+++ L LA LF+P+ YP +EL +VMI+CP ++NALQFW+ D+ L +
Sbjct: 41 KRYHEVPRRPVTIWAFDASKQMIGAGFAHVANLLIAIMLYQYEHGHGSGTTGVDQCAFYFVNFTMDTTVGVLFNWMFLEMVSSLAVRFQFTSLTTPGDYGDPIQVSIWLKQLVSWIFIIFLTKLVIALVIVALEKPLGDLAMWLFAPLQPYPNVELAIVMILCPCLMNALQFWVQDSFLKKD 222
BLAST of mRNA_Ecto-sp13_S_contig8360.19728.1 vs. uniprot
Match: K3WV98_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WV98_GLOUD) HSP 1 Score: 140 bits (354), Expect = 7.950e-38 Identity = 76/181 (41.99%), Postives = 107/181 (59.12%), Query Frame = 1
Query: 4 KRWRAPVKRDLVVWMYDVSKQGFGAMFIHVWNILLSI------HEGGGIPGSDECAMYFVNFSLDIAIGTFMIWCFVRVQELTAVRCGIDSLKVTGDYGTPPLFSVYRTQLLAYTVILVICKAVTTAIVIAMDEVLSSLAKALFSPVSAYPELELTLVMIICPWILNALQFWILDNVLMSE 528
KR R +R L VW +D SKQ GA F HV N+L++I E + G D+CA YFVNF++D G F+ W F+ + A R S+ V GDYG P V+ QL+++ VI+ + K V ++A+++ L LA +F+P+ YP LEL LVMI CP ++NALQFWI D+ L +
Sbjct: 48 KRLREVPQRPLAVWAFDASKQMVGAGFAHVANLLIAILLYNHQMEAQVMKGVDQCAFYFVNFTMDTTFGVFLNWAFLEGFSMLARRFQWTSVMVPGDYGNPIRVRVWLAQLISWIVIIFLTKLVIAVFIVALEKPLGELAMWVFTPLQPYPHLELALVMIACPCLMNALQFWIQDSFLKKD 228
BLAST of mRNA_Ecto-sp13_S_contig8360.19728.1 vs. uniprot
Match: A0A2P4YBL8_9STRA (Membrane protein n=1 Tax=Phytophthora palmivora var. palmivora TaxID=611791 RepID=A0A2P4YBL8_9STRA) HSP 1 Score: 139 bits (350), Expect = 3.720e-37 Identity = 71/182 (39.01%), Postives = 107/182 (58.79%), Query Frame = 1
Query: 4 KRWRAPVKRDLVVWMYDVSKQGFGAMFIHVWNILLSI-------HEGGGIPGSDECAMYFVNFSLDIAIGTFMIWCFVRVQELTAVRCGIDSLKVTGDYGTPPLFSVYRTQLLAYTVILVICKAVTTAIVIAMDEVLSSLAKALFSPVSAYPELELTLVMIICPWILNALQFWILDNVLMSE 528
KR R +R L+VW +D +KQ GA F HV N+L++I + G D+CA+YFVNF+LD G F+ + + L A+R G SLK GDYG P + Q+ ++ +++ CK + ++++A + L S A +F P+ +PE+EL LVMI CP ++NA+QFWI DN L +
Sbjct: 41 KRLREVPRRPLMVWAFDAAKQMIGATFAHVANLLIAILLYSYQEEQQSGEEAVDQCALYFVNFTLDTTFGVFLNYVLLSAVVLLALRFGWSSLKTPGDYGYPVRVRTWVLQVCSWIIVIFTCKFLIASVIVAFQKPLGSFAMWMFKPLEKHPEVELALVMIACPCLMNAMQFWIQDNFLKKD 222
BLAST of mRNA_Ecto-sp13_S_contig8360.19728.1 vs. uniprot
Match: A0A0P1ATD2_PLAHL (Phosphatidylinositol-3,5-bisphosphate 3-phosphatase n=1 Tax=Plasmopara halstedii TaxID=4781 RepID=A0A0P1ATD2_PLAHL) HSP 1 Score: 146 bits (368), Expect = 3.900e-37 Identity = 75/184 (40.76%), Postives = 111/184 (60.33%), Query Frame = 1
Query: 4 KRWRAPVKRDLVVWMYDVSKQGFGAMFIHVWNILLSI---------HEGGGIPGSDECAMYFVNFSLDIAIGTFMIWCFVRVQELTAVRCGIDSLKVTGDYGTPPLFSVYRTQLLAYTVILVICKAVTTAIVIAMDEVLSSLAKALFSPVSAYPELELTLVMIICPWILNALQFWILDNVLMSE 528
KR R +R LVVW +D +KQ GA F HV N+ ++I H G D+CA+YFVNF+LD G F+ + + L A+R SLK GDYGTPP + TQ++++ +++ +CK + +++A + L + A LF P+ +YP++ELT+VMI CP ++NALQFWI DN L +
Sbjct: 800 KRLREVPRRPLVVWTFDAAKQMVGATFAHVANLFIAIVLYSYQEDMHSVG--HSVDQCALYFVNFTLDTTFGIFLNYVLLSAVVLLALRFNWSSLKKPGDYGTPPRVRTWVTQVISWILVIFVCKILIAVVIVAFQKPLGAFAALLFKPLDSYPDVELTIVMIACPCLMNALQFWIQDNFLKKD 981
BLAST of mRNA_Ecto-sp13_S_contig8360.19728.1 vs. uniprot
Match: A0A8K1CQH4_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CQH4_PYTOL) HSP 1 Score: 138 bits (348), Expect = 5.530e-37 Identity = 70/183 (38.25%), Postives = 107/183 (58.47%), Query Frame = 1
Query: 4 KRWRAPVKRDLVVWMYDVSKQGFGAMFIHVWNILLSI------HEGGGIP--GSDECAMYFVNFSLDIAIGTFMIWCFVRVQELTAVRCGIDSLKVTGDYGTPPLFSVYRTQLLAYTVILVICKAVTTAIVIAMDEVLSSLAKALFSPVSAYPELELTLVMIICPWILNALQFWILDNVLMSE 528
KR R +R L VW +D SKQ GA F HV N+L++I H G G+ G D+CA YFVNF++D IG + W F+ + A RC +L GDYG P S++ Q++++ +++ + K V +++ +++ L A LF+P+ YP EL +VMI CP ++NA QFW+ D+ L +
Sbjct: 41 KRQREVPRRPLAVWAFDASKQMIGAGFAHVANLLIAIMLYQRDHGGVGMDTTGVDQCAYYFVNFTMDTTIGVCLNWVFLELMSTLAARCRWTALSTPGDYGNPIQISIWAKQVVSWIIVIFLVKLVIAMMILGLEKPLGEFAIWLFTPLQPYPRTELAIVMIACPCLMNAFQFWVQDSFLKKD 223 The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8360.19728.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_Ecto-sp13_S_contig8360.19728.1 >prot_Ecto-sp13_S_contig8360.19728.1 ID=prot_Ecto-sp13_S_contig8360.19728.1|Name=mRNA_Ecto-sp13_S_contig8360.19728.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=190bp FKRWRAPVKRDLVVWMYDVSKQGFGAMFIHVWNILLSIHEGGGIPGSDECback to top mRNA from alignment at Ecto-sp13_S_contig8360:1410..3941+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_Ecto-sp13_S_contig8360.19728.1 ID=mRNA_Ecto-sp13_S_contig8360.19728.1|Name=mRNA_Ecto-sp13_S_contig8360.19728.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2532bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8360:1410..3941+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8360:1410..3941+ >mRNA_Ecto-sp13_S_contig8360.19728.1 ID=mRNA_Ecto-sp13_S_contig8360.19728.1|Name=mRNA_Ecto-sp13_S_contig8360.19728.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=570bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8360:1410..3941+ (Ectocarpus species13 EcNAP12_S_4_19m)back to top |