mRNA_Ecto-sp13_S_contig8356.19720.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8356.19720.1
Unique NamemRNA_Ecto-sp13_S_contig8356.19720.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8356.19720.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8356contigEcto-sp13_S_contig8356:5595..6053 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size460
Hectar predicted targeting categoryother localisation
Exons1
Cds size444
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464105.7733648-UTR-Ecto-sp13_S_contig8356:5594..56091681464105.7733648-UTR-Ecto-sp13_S_contig8356:5594..5609Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8356 5595..5609 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464105.785357-CDS-Ecto-sp13_S_contig8356:5609..60531681464105.785357-CDS-Ecto-sp13_S_contig8356:5609..6053Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8356 5610..6053 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8356.19720.1prot_Ecto-sp13_S_contig8356.19720.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8356 5610..6053 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8356.19720.1

>prot_Ecto-sp13_S_contig8356.19720.1 ID=prot_Ecto-sp13_S_contig8356.19720.1|Name=mRNA_Ecto-sp13_S_contig8356.19720.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=148bp
MNAIREGSANNGIQFNTFRFSALPTSAKAGKLDEILEKTSLNTDVVYVFK
GSRELNDITFYIRKQIEKARVGRSRDMSFANMYMFVFFDGFLLPIGQDND
SAFWTRFLCRTREPRCCVCLRENLLFFEKGVCLEACSAVVCESCVDTF
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mRNA from alignment at Ecto-sp13_S_contig8356:5595..6053+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8356.19720.1 ID=mRNA_Ecto-sp13_S_contig8356.19720.1|Name=mRNA_Ecto-sp13_S_contig8356.19720.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=459bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8356:5595..6053+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTACGTTCAAGTACCATGAATGCTATTCGCGAAGGGTCGGCCAACAACGG
CATACAATTTAACACGTTTCGTTTTTCCGCTCTACCAACGTCGGCAAAAG
CCGGTAAATTAGACGAGATTTTGGAAAAGACCAGTCTCAACACCGATGTT
GTATATGTATTTAAGGGAAGCAGGGAACTAAATGATATCACGTTTTACAT
ACGAAAACAAATCGAGAAAGCAAGAGTGGGCCGATCACGCGACATGTCGT
TTGCCAATATGTACATGTTTGTATTTTTCGACGGTTTTCTTCTGCCAATC
GGGCAGGACAACGATTCTGCCTTCTGGACCAGGTTCCTTTGCAGGACGCG
AGAGCCAAGGTGTTGTGTGTGCCTCAGGGAAAATCTGCTTTTCTTCGAGA
AGGGCGTGTGTTTGGAGGCCTGTTCGGCAGTGGTATGCGAATCTTGTGTT
GATACCTTC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8356:5595..6053+

>mRNA_Ecto-sp13_S_contig8356.19720.1 ID=mRNA_Ecto-sp13_S_contig8356.19720.1|Name=mRNA_Ecto-sp13_S_contig8356.19720.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=444bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8356:5595..6053+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAATGCTATTCGCGAAGGGTCGGCCAACAACGGCATACAATTTAACAC
GTTTCGTTTTTCCGCTCTACCAACGTCGGCAAAAGCCGGTAAATTAGACG
AGATTTTGGAAAAGACCAGTCTCAACACCGATGTTGTATATGTATTTAAG
GGAAGCAGGGAACTAAATGATATCACGTTTTACATACGAAAACAAATCGA
GAAAGCAAGAGTGGGCCGATCACGCGACATGTCGTTTGCCAATATGTACA
TGTTTGTATTTTTCGACGGTTTTCTTCTGCCAATCGGGCAGGACAACGAT
TCTGCCTTCTGGACCAGGTTCCTTTGCAGGACGCGAGAGCCAAGGTGTTG
TGTGTGCCTCAGGGAAAATCTGCTTTTCTTCGAGAAGGGCGTGTGTTTGG
AGGCCTGTTCGGCAGTGGTATGCGAATCTTGTGTTGATACCTTC
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