mRNA_Ecto-sp13_S_contig8330.19693.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8330.19693.1
Unique NamemRNA_Ecto-sp13_S_contig8330.19693.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig8330.19693.1 vs. uniprot
Match: D8LE29_ECTSI (Thiaminase II n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LE29_ECTSI)

HSP 1 Score: 890 bits (2300), Expect = 0.000e+0
Identity = 484/608 (79.61%), Postives = 490/608 (80.59%), Query Frame = 2
Query:  170 MDGMRKDVGHGFTLPGSLWQDCQLEAMRSLHHPWTLGLATGKTSLASFKNYVAQDAYFLKAFAKAYAYALAKAEDEEDIRAFHSLIGSVLEELGLHASYSAKWGIDVANTPPPVKATAEYVDFLMAVASDPTSSVAQVLAAMVPCMRLYAFLGQELRYAFPNWAESAYAEWIETYSSEDFEDAAGLVESLLDKNSAGADYPSLFALYRKAMELEFAFFDAQLDGGTEAAMLEQSVGAEAGGQQGTSVQPGGKDAGDRGRFHGVHERLALLCVDFDDTLTEGDTTSLLVETAKAQRETPEDRVDLGREWVLLTRTFLSKWSEAIEDSLSTKPSTTACTTNGSGAVDREGLELMLRKLEVVDLDSVSRVSDSKVLRGLTRDEVHSSLAGPLRSSWKVRPGMARCMSRALVSPFQTHVVSINWSQDVISRVLSETLLESHSSLSSTTGIDARGRVWAGETASPRLEGGCPASVSSNDLVFDEHGVSTGEIAVKIPGSFGKHQRFVDLAAMARESVASSESLPRLMTVYVGDSVTDLLAMLDADVGIVVGNSGSFEKVARAFGIDIRPLASVYEAMDGTEELPRTGAPSGSGQCVYRASQWAEIDVFLFGGE 1993
            MDGMRKDVG G TLPGSLWQDCQLEAMRSLHHPWTLGLATGKTSLASFKNYVAQDAYFL+AFAKAYAYALAKAEDEEDIRAFHSLIGSVLEELGLHASYSAKWGIDVAN                                             ELR+AFPNW ESAYAEWIETYSSEDFEDAAGLVESLLDKNSAGADYPSLFALYRKAMELEFAFFDAQLDGGTEAAMLEQSVGAEAGG+QG S QPGG+DAG RGRF GVHERLALLCVDFDDTLTEGDT SLLVETAKAQRETPEDRVDLGREW LLTRTFL KWSE IEDSLSTK STT CTTNGSGAVDREGLELMLRKL VVDLDSVSRVSDSK                                                   DVISRVLSETLL+SHSS SSTTGIDA G VWAGETASPRLEG CPASVSSNDLVFDEHGVSTGEI VKIPGSFGKHQRF+DLAA ARESVASSES PRLMTVYVGDSVTDLLAMLDADVGIVVGNSGSFEKVARAFGIDIRPLASVYEAMDGT ELPRTGAPSGSGQCVYRASQWAEIDVFLFGGE
Sbjct:    1 MDGMRKDVGKGSTLPGSLWQDCQLEAMRSLHHPWTLGLATGKTSLASFKNYVAQDAYFLRAFAKAYAYALAKAEDEEDIRAFHSLIGSVLEELGLHASYSAKWGIDVAN---------------------------------------------ELRHAFPNWTESAYAEWIETYSSEDFEDAAGLVESLLDKNSAGADYPSLFALYRKAMELEFAFFDAQLDGGTEAAMLEQSVGAEAGGRQGMSAQPGGQDAGGRGRFRGVHERLALLCVDFDDTLTEGDTISLLVETAKAQRETPEDRVDLGREWGLLTRTFLGKWSETIEDSLSTKLSTT-CTTNGSGAVDREGLELMLRKLGVVDLDSVSRVSDSK---------------------------------------------------DVISRVLSETLLDSHSSSSSTTGIDAGGCVWAGETASPRLEGDCPASVSSNDLVFDEHGVSTGEILVKIPGSFGKHQRFLDLAATARESVASSESSPRLMTVYVGDSVTDLLAMLDADVGIVVGNSGSFEKVARAFGIDIRPLASVYEAMDGTGELPRTGAPSGSGQCVYRASQWAEIDVFLFGGE 511          
BLAST of mRNA_Ecto-sp13_S_contig8330.19693.1 vs. uniprot
Match: A0A6H5J5C1_9PHAE (TENA_THI-4 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5C1_9PHAE)

HSP 1 Score: 811 bits (2094), Expect = 5.260e-288
Identity = 465/668 (69.61%), Postives = 482/668 (72.16%), Query Frame = 2
Query:  179 MRKDVGHGFTLPGSLWQDCQLEAMRSLHHPWTLGLATGKTSLASFKNYVAQDAYFLKAFAKAYAYALAKAEDEEDIRAFHSLIGSVLEELGLHASYSAKWGIDVAN---------------TP----------------PPVKATAEYVDFLMAV--ASDPTSSVAQVLAAMVPCMRLYA-------------------------------FLGQELRYAFPNWAESAYAEWIETYSSEDFEDAAGLVESLLDKNSAGADYPSLFALYRKAMELEFAFFDAQLDGGTEAAMLEQSVGAEAGGQQGTSVQPGGKDAGDRGRFHGVHERLALLCVDFDDTLTEGDTTSLLVETAKAQRETPEDRVDLGREWVLLTRTFLSKWSEAIEDSLSTKPSTTACTTNGSGAVDREGLELMLRKLEVVDLDSVSRVSDSKVLRGLTRDEVHSSLAGPLRSSWKVRPGMARCMSRALVSPFQTHVVSINWSQDVISRVLSETLLESHSSLSSTTGIDARGRVWAGETASPRLEGGCPASVSSNDLVFDEHGVSTGEIAVKIPGSFGKHQRFVDLAAMARESVASSESLPRLMTVYVGDSVTDLLAMLDADVGIVVGNSGSFEKVARAFGIDIRPLASVYEAMDGTEELPRTGAPSGSGQCVYRASQWAEIDVFLFGG 1990
            MR DVG  FTLPGSLWQDCQLEAMRSLHHPWTLGLATGKTSLASFKNYVAQDAYFL+AFAKAYAYALAKAEDEEDIRAFHSLIGSVLEELGLHASYSAKWGIDVAN               TP                  VK  +++   L  +   +      A+ L       R +A                               F+ QELR A PNW ES YAEWIETYSSEDFEDAAGLVESLLDKNSAGADYPSLFAL RKAMELEFAFFDAQLDG TEAAMLEQSVGAEAGG+QG SVQPGGKDAG RGRF GVHERLALLCVDFDDTLTEGDTTSLLVETAKAQRETPEDRVDLGREWVLLTRTFLSKWSE IEDSLSTK STTACTTNGSGAVDREGLELMLRKLEVVDLDS SRVSDSKV R L R+                   + R    A++   +                                          GETASPRLEG CPASVSSNDLVFDEHGVSTGEIAVKIPGSFGKHQRF+DLAAMARESVASSES PRLMTVYVGDSVTDLLAMLDADVGIVVGNSGSFE+VARAFGIDI PLASVYEAMDG  ELP TGAP GSGQ VYRASQW EIDVFLFGG
Sbjct:    1 MRMDVGERFTLPGSLWQDCQLEAMRSLHHPWTLGLATGKTSLASFKNYVAQDAYFLRAFAKAYAYALAKAEDEEDIRAFHSLIGSVLEELGLHASYSAKWGIDVANVRAKTTGVKLQIGSCTPLNFGLTGVWNVVHCRFASVKLHSDWAHLLYPINQGNKQMQVSAKELGERAMKRRSFAGLYLASLQIGLYRRQFHQCNVMTFADVLSSLFVAQELRDALPNWTESPYAEWIETYSSEDFEDAAGLVESLLDKNSAGADYPSLFALCRKAMELEFAFFDAQLDGVTEAAMLEQSVGAEAGGRQGMSVQPGGKDAGGRGRFRGVHERLALLCVDFDDTLTEGDTTSLLVETAKAQRETPEDRVDLGREWVLLTRTFLSKWSETIEDSLSTKLSTTACTTNGSGAVDREGLELMLRKLEVVDLDSASRVSDSKV-RELARE-------------------IRRYFLAAIIVQREP-----------------------------------------GETASPRLEGDCPASVSSNDLVFDEHGVSTGEIAVKIPGSFGKHQRFLDLAAMARESVASSESSPRLMTVYVGDSVTDLLAMLDADVGIVVGNSGSFERVARAFGIDILPLASVYEAMDGRGELPTTGAPLGSGQRVYRASQWTEIDVFLFGG 607          
BLAST of mRNA_Ecto-sp13_S_contig8330.19693.1 vs. uniprot
Match: A0A0G4GYE5_VITBC (TENA_THI-4 domain-containing protein n=3 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GYE5_VITBC)

HSP 1 Score: 245 bits (626), Expect = 1.550e-68
Identity = 197/605 (32.56%), Postives = 284/605 (46.94%), Query Frame = 2
Query:  221 LWQDCQLEAMRSLHHPWTLGLATGKTSLASFKNYVAQDAYFLKAFAKAYAYALAKAE--DEEDIRAFHSLIGSVLEELGLHASYSAKWGIDVANTPPPVKATAEYVDFLMAVASDPTSSVAQVLAAMVPCMRLYAFLGQELRYAF--PNWAESAYAEWIETYSSEDFEDAAGLVESLLDKNSAGADYPSLFALYRKAMELEFAFFDAQLDGGTEAAMLEQSVGAEAGGQQGTSVQPGG-KDAGDRGRFHGVHER--LALLCVDFDDTLTEGDTTSLLVETAKAQRETPEDRVDLGREWVLLTRTFLSKWSEAIEDSLSTKPSTTACTTNGSGAVDREGLELMLRKLEVVDLDSVSRVSDSKVLRGLTRDEVHSSLAGPLRSSWKVRPGMARCMSRALVSPFQTHVVSINWSQDVISRVLSETLLESHSSLSSTTGIDARGRVWAGETASPRLEGGCPAS--VSSNDLVFDEHGV-STGEIAVKIPGSFGKHQRFVDLAAMARESVASSESLPRLMTVYVGDSVTDLLAMLDADVGIVV----GNSGSFEKVARAFGIDIRPLASVYEAMDGTEELPRTGAPSGSGQCVYRASQWAEIDVFLFGGE 1993
            LWQ C+  A++SL+HPW L L     +  S+  ++ QDA+FL+ FAKAYA+AL K    D E IRAF++LIG VL EL LH S S +W ID  +T  P +AT  Y  FL  V +D  ++ A VLA+M PCM LYAF+G+ LR        A   Y EW+ TYSS +F   A  VE LLD+ +       L +L  +  E      DA    G        ++  E G     ++ P     +    R  G+ +R  L+ + +DFD T T+ DTT LL E A      P+    + + W  +   F  K+   + + L            G       GLE  L  L   +  +V+ VS++++L+G TRD+V   +   LR  W+VR      +S  L       ++S++WSQD+I  +L +                                 G P S  ++ N   F E    +TGEI+  + G+  K + F  L    RE       L    +V++GDSVTDLLA+L+AD+GIV+      + + +KV   +GID++PL          +E       S     +Y A  W EI V LFG E
Sbjct:   53 LWQKCRRRALKSLYHPWVLRLGASVLARESYVEFMRQDAFFLEIFAKAYAHALCKCPPGDVEGIRAFNALIGGVLSELTLHQS-STEWAIDT-STFTPNEATVRYTSFLRDVGADQWTTTAMVLASMAPCMSLYAFIGKALREGVGEEGMAGHRYNEWLATYSSAEFAQDAARVEELLDRYT-----DPLLSLSGQVGE------DAVR--GNLLYYYGNAMDLEYGFFDAQALPPPSCAPSASPSRHPGLAQRGVLSFVAIDFDGTCTQRDTTPLLHEVAAEVHSDPDQ---VRQRWRAIEDAFFDKYRRKVGELL-----------EGKVRDGMNGLEAFLGGLGEFEKAAVADVSEARLLQGFTRDDVRRMVKTSLRQKWQVRDACGEVLSGLLSHDVPASIISVSWSQDMIHTILQDAC-------------------------------GAPLSLPITCNSFSFREDDQRATGEISSHMTGAVDKLRAFRRL----REEKGREGRL----SVFIGDSVTDLLALLEADIGIVLKDALNKNNTLDKVISLYGIDVQPLVRAAMIAQCGQEAATVTPVSMPPMTIYAADGWDEIGVMLFGNE 589          
BLAST of mRNA_Ecto-sp13_S_contig8330.19693.1 vs. uniprot
Match: A0A2V0PBE0_9CHLO (Thiamine phosphate synthase n=1 Tax=Raphidocelis subcapitata TaxID=307507 RepID=A0A2V0PBE0_9CHLO)

HSP 1 Score: 253 bits (647), Expect = 4.370e-68
Identity = 200/611 (32.73%), Postives = 283/611 (46.32%), Query Frame = 2
Query:  200 GFTLPGS----LWQDCQLEAMRSLHHPWTLGLATGKTSLASFKNYVAQDAYFLKAFAKAYAYALAKAEDE--EDIRAFHSLIGSVLEELGLHASYSAKWGIDVANTPPPVKATAEYVDFLMAVASDPTSSVAQVLAAMVPCMRLYAFLGQELRYAFPNWAESAYAEWIETYSSEDFEDAAGLVESLLDKNSAGADYPSLFALYRKAMELEFAFFDAQLDGGTEAAMLEQSVGAEAGGQQGTSVQPGGKDAGDRGRFHGVHERLALLCVDFDDTLTEGDTTSLLVETA---KAQRETPED----RVDLGREWVLLTRTFLSKWSEAIEDSLSTKPSTTACTTNGSGAVDREGLELMLRKLEVVDLDSVSRVSDSKVLRGLTRDEVHSSLAGPLRSSWKVRPGMARCMSRALVSPFQTHVVSINWSQDVISRVLSETLLESHS-SLSSTTGIDARGRVWAGETASP-RLEGGCPASVSSNDLVFDEHGVSTGEIAVKIPGSFGKHQRFVDLAAMARESVASSESLPRLMTVYVGDSVTDLLAMLDADVGIVVGNSGSFEKVARAFGIDIRPLASVYEAMDGTEELPRTGAPSGSGQCVYRASQWAEIDVFLFG 1987
            G  LPG     LW +CQLEA R+L HP+ L L  G     +F++YVAQDA+FL  FA+AYA AL K  D   E       L+  V  EL LH SY+  WG+++        A   Y DFLMA A DP ++VA+VLA+MVPC RLY FLG  L  A P    + YA+WI  YSS ++       E+LLD+ +  A Y  L +LY++AM+LE AFF                           S  PG   A            + +L  DFDDT TE DT   L+  A     +R  PE+    R  L      L   + SK +  + + L    S  A      G  D  GL   + +L   D+   +   +S +L GL+RD+V ++          ++PG    ++ AL +   THVVS+NWS++ ++  L     ++     + + G +A   V AG    P RL      ++ +N+L     G+STG +   +  +  K + F  L A   +             V+VGDS TD+L +L AD GIVVG++    +     G  + PL +    +          A  G  + VY A+ W EI  FLFG
Sbjct:    9 GLPLPGGVSERLWGECQLEAFRALQHPFVLALGLGTLPRDTFRHYVAQDAHFLHFFARAYAAALDKCADANAEAHVVLQQLLMGVHMELRLHGSYARTWGVELDALDHVDPACQAYTDFLMATAEDPETTVAEVLASMVPCSRLYGFLGCALARAHPRQRGNPYADWISMYSSFEYLVHPMQKEALLDRLAGDAPYDRLRSLYKRAMQLEVAFF---------------------------SAAPGIPAA----------RHVGMLVCDFDDTCTEKDTIGTLLSAAIDAAVKRAGPEEXXXLRARLDAVVARLVENYSSKHAALLAEILPEGASAAAA----EGGFDEAGLRAFVERLSDFDVQMNAVAVESGILAGLSRDDVAAAARAVA-----LKPGCREALAAALGAELPTHVVSVNWSREFVAAALGLPAADAADWGAAGSDGDEAAAAVIAGAAPPPGRL------AIHANELARGADGLSTGALRRAVQCARDKGRLFAALQAARGKG-----GXXXXAAVFVGDSATDVLPLLAADYGIVVGSNKLLRRALARHGASLVPLCAA--PLTAPARGGGGAASDGVARVVYEAASWDEIHAFLFG 560          
BLAST of mRNA_Ecto-sp13_S_contig8330.19693.1 vs. uniprot
Match: A0A7J7QPC3_9CHLO (Thiamine phosphate synthase n=1 Tax=Scenedesmus sp. NREL 46B-D3 TaxID=2650976 RepID=A0A7J7QPC3_9CHLO)

HSP 1 Score: 250 bits (638), Expect = 1.050e-66
Identity = 201/630 (31.90%), Postives = 287/630 (45.56%), Query Frame = 2
Query:  188 DVGHGFTLPGSL----WQDCQLEAMRSLHHPWTLGLATGKTSLASFKNYVAQDAYFLKAFAKAYAYALAKAEDEEDIRAFHSLIGSVL----EELGLHASYSAKWGIDVANTPPPVKATAEYVDFLMAVASDPTSSVAQVLAAMVPCMRLYAFLGQELRYAFPNWAESAYAEWIETYSSEDFEDAAGLVESLLDKNSAGADYPSLFALYRKAMELEFAFFDAQLDGGTEAAMLEQSVGAEAGGQQGTSVQPGGKDAGDRGRFHGVHERLALLCVDFDDTLTEGDTTSLLVETAKAQRETPED------------RVDLGREWVLLTRTFLSKWSEAIEDSLST---KPSTTACTTNG--SGAVDREGLELMLRKLEVVDLDSVSRVSDSKVLRGLTRDEVHSSLAGPLRSSWKVRPGMARCMSRALVSPFQTHVVSINWSQDVISRVLSETLLESHSSLSSTTGIDARGRVWAGETASPRLEGGCPASVSSNDLVFDEHGVSTGEIAVKIPGSFGKHQRFVDLAAMARESVASSESLPRLMTVYVGDSVTDLLAMLDADVGIVVGNSGSFEKVARAFGIDIRPLASVYEAMDGTEELPRTGAPSGSG-----QCVYRASQWAEIDVFLFG 1987
            D+  G  +PG L    W+D Q EAM +LHHP+   LA G     + K+YV QD +FL  FA+AYA A+ K      + A  +++  +L     EL LH SY+AKWG+ V     P  AT+ Y D+LM VA+DP +SVA+VLAAM+PC RLY FLG +L  A       AY+EW+ETYS  ++  +  + E L DK +    Y  L  LY +AM+LE  FF AQ +G                        P  +  G             LL  DFDDT+TE DT  +L+  A                     R  L  +   L   +++K  + +   L     KP+     TN   +   D++GL      L   D++    V D+  L GLT+ +V ++  G       +RPG  R +S A  +     V+S+NWS+ ++  VL  T               A                     + +N+L +   GVSTG++  ++     K  R +D  A+ ++  +SS S  R   VYVGDS +D+L +L AD GIV+G +    +   AFG+ ++PL S           P T A S          +Y AS W EI  FLFG
Sbjct:   56 DMFSGLPVPGGLSEQLWRDTQAEAMEALHHPFVQALAAGTLDRWA-KHYVLQDLFFLTRFARAYAAAIDKCAHSPHLGAAKAVLAELLLGVDAELKLHGSYAAKWGVAVDEWVWPSAATSAYTDYLMEVATDPETSVAEVLAAMIPCARLYGFLGCQLAAATRGQPRHAYSEWVETYSGAEYLASPVIKEELFDKIAHAVPYGRLKQLYARAMQLEVNFFSAQPNG------------------------PAPRHVG-------------LLVCDFDDTITEKDTIGVLMAAAVEANVKSSXXXXXXXXXXXXLRQQLNAQVKTLADNYMTKQQQLLASLLPADDGKPAAAMSVTNSVNNKTYDKDGLLAFCEALSDFDVEMNQVVVDAGCLAGLTKADVAAAAGGIA-----LRPGSMRTLSAAAAAGLPVAVLSVNWSRSLMEAVLQPT---------------AAAXXXXXXXXXXXXXXXXXLEIYANELAWGPEGVSTGDLRREVQCGRDKG-RVMD--ALLKQHQSSSSS--RGAVVYVGDSSSDILPLLKADYGIVIGGNRLLHRALEAFGVSLQPLCSA----------PMTPASSXXXXXXXXSVLYAASSWQEIAAFLFG 612          
BLAST of mRNA_Ecto-sp13_S_contig8330.19693.1 vs. uniprot
Match: A0A383WBI9_TETOB (Thiamine phosphate synthase n=2 Tax=Tetradesmus obliquus TaxID=3088 RepID=A0A383WBI9_TETOB)

HSP 1 Score: 250 bits (638), Expect = 1.140e-66
Identity = 195/629 (31.00%), Postives = 277/629 (44.04%), Query Frame = 2
Query:  188 DVGHGFTLPGSL----WQDCQLEAMRSLHHPWTLGLATGKTSLASFKNYVAQDAYFLKAFAKAYAYALAKAEDEEDIRAFHSLIGSVL----EELGLHASYSAKWGIDVANTPPPVKATAEYVDFLMAVASDPTSSVAQVLAAMVPCMRLYAFLGQELRYAFPNWAESAYAEWIETYSSEDFEDAAGLVESLLDKNSAGADYPSLFALYRKAMELEFAFFDAQLDGGTEAAMLEQSVGAEAGGQQGTSVQPGGKDAGDRGRFHGVHERLALLCVDFDDTLTEGDTTSLLVETA------------KAQRETPEDRVDLGREWVLLTRTFLSKWSEAIEDSLSTKPSTTACTTNGSGAV-----DREGLELMLRKLEVVDLDSVSRVSDSKVLRGLTRDEVHSSLAGPLRSSWKVRPGMARCMSRALVSPFQTHVVSINWSQDVISRVLSETLLESHSSLSSTTGIDARGRVWAGETASPRLEGGCPASVSSNDLVFDEHGVSTGEIAVKIPGSFGKHQRFVDLAAMARES---VASSESLPRLMTVYVGDSVTDLLAMLDADVGIVVGNSGSFEKVARAFGIDIRPLASV-YEAMDGTEELPRTGAPSGSGQCVYRASQWAEIDVFLFG 1987
            D+  G  +PG L    W D Q EAM +LHHP+   LA G    A F++YV QD +FL  FA+AYA A+ K      + A  +++  +L     EL LH SY+AKWG+ V     P  AT++Y DFLM VA+DP +SVA+VLAAM+PC RLY FLG +L  A       AY+EW+ TYS  ++  +  + E L DK +A   Y  L  LY +AM+LE  FF AQ +G                        P  +  G             LL  DFDDT+TE DT   L+  A                     R  L  +   L   +++K  + +   L      +A     S +V     D++GL      L   D++    V D+  L GLT+  V ++      S+  +RPG AR +S A  +     ++S+NWS+ ++  VL                                        + +N+LV+   GVSTG++  +I  +  K +    L    R S               VYVGDS +D+L +L AD GI++G++    K   AFG+ ++PL S                     G  +Y AS W EI  FLFG
Sbjct:   29 DIFSGLPVPGGLSERLWADSQAEAMEALHHPFVQALAAGTLDRACFQHYVLQDLFFLTRFARAYAAAIDKCGTTPALAAAKAVLAELLLGVDAELKLHGSYAAKWGVAVDEWVWPSAATSQYTDFLMQVATDPETSVAEVLAAMIPCARLYGFLGCQLAAATQGLPRHAYSEWVATYSGAEYLASPVMKEELFDKIAAAEPYDRLKQLYTRAMQLEVNFFSAQPNG------------------------PAPRHVG-------------LLVCDFDDTITEKDTIGTLLGAAVEXXXXXXXXXXXXXXXXXXXRQQLNTQVKNLADNYMTKQQQLLASLLPADDDASAAAAGVSNSVTNKSYDKDGLLAFCEALSDFDVEMNQVVVDAGCLAGLTKAGVIAAA-----SNITLRPGSARTLSAAAAAGLPVALLSVNWSKSLMQAVLQPAAXXXX--------XXXXXXXXXXXXXXXXXXXXXXMEIHANELVWGPDGVSTGDLQREIQCARDKGRVMDTLLQQHRSSSXXXXXXXXXXXXAVVYVGDSSSDILPLLKADYGIIIGSNKLLRKALAAFGVGLQPLCSAPMTPSSXXXXXXXXXXXXXEGPVLYEASSWQEIAAFLFG 607          
BLAST of mRNA_Ecto-sp13_S_contig8330.19693.1 vs. uniprot
Match: A0A2K3DGU0_CHLRE (Thiamine phosphate synthase n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DGU0_CHLRE)

HSP 1 Score: 239 bits (610), Expect = 3.450e-63
Identity = 213/625 (34.08%), Postives = 280/625 (44.80%), Query Frame = 2
Query:  209 LPGSLWQDCQLEAMRSLHHPWTLGLATGKTSLASFKNYVAQDAYFLKAFAKAYAYALAKAE--DEEDIRAFHSLIGSVLEELGLHASYSAKWGID--VANTPPPVKATAEYVDFLMAVAS--DPTSSVAQVLAAMVPCMRLYAFLGQELRYAF-PNWAESA-----YAEWIETYSSEDFEDAAGLVESLLDKNSA-GADYPSLFALYRKAMELEFAFFDAQLDGGTEAAMLEQSVGAEAGGQQGTSVQPGGKDAGDRGRFHGVHERLALLCVDFDDTLTEGDTTSLLVETAKAQRETPEDRVDLGREWVLLTRTFLSKWSEAIEDSLSTK--PSTTACTTNGSGAVDREGLELMLRKLEVVDLDSVSRVSDSKVLRGLTRDEVHSSLAGPLRSSWKVRPGMARCMSRALVSPFQTHVVSINWSQDVISRVLSETLLESHSSLSSTTGIDARGRVWAGETASPRLEGGC--PASVS--SNDLVFDEHGVSTGEIAVKIPGSFGKHQRFVDL----------AAMARESVASSESLPRLMTVYVGDSVTDLLAMLDADVGIVVGNSGSFEKVARAFGIDIRPLASVYEAMDGTEELPRTGAPSGSGQCVYRA-SQWAEIDVFLFGGE 1993
            L   LW + Q E   SLH P+  G+A G     +F++YVAQDAYFL  FA+AY  AL+KA   DE+       L+  V EEL LH SY+AKWG+D  VA T P   AT  Y DFLM VA       SVA++LAAM+PC RLY FLG  L  A  P   + A     Y EW++TYSS+++    GL E + ++ +  GAD   L ALYR+AM+LE  FF AQ                                      +     R + L VDFD+T T  DT   L+  A A    P         WV  T   L+    A +  L  +  P      T      D  GLE +L  L   D      V +  +LRG T  EV ++ AG      ++RP     ++ AL      HV+S+NWS   +   LS                    R+ AGE            PA+V    N L  D  G++TG +  ++  +  K     +L          AA A  S  S  S      VYVGDS +DL AMLD+D G+V+G++    +V R FG+ I PLA+          L     P+G+   +Y A   WAEI  FLFG E
Sbjct:   15 LAKELWDNVQHEVFMSLHDPFVQGMAQGTLDKRAFQHYVAQDAYFLHYFARAYGIALSKALALDEQTFEDLTGLLRGVHEELQLHGSYAAKWGVDMTVAGTRPSA-ATKAYTDFLMDVADAGGQDGSVAEILAAMLPCARLYGFLGAALAGAHGPQAPDQAPPCHDYWEWVKTYSSQEYLSVPGLKERMFERLAGKGADKAKLLALYRRAMQLEAEFFAAQ-------------------------------------PYSPPPRRFSALVVDFDETCTARDTIGGLMRLAAAAAGQPGRATAGDAAWVSATSARLADAYVAAQGELLGRLLPEGAPDAT----CYDAAGLEALLAALSDFDAAMNGPVEECGILRGSTAAEVAAAGAG-----LQLRPQCREVLAGALGRGIPVHVLSVNWSDVYVGAALSAAAXXXXXXXXXXXXXXLPVRL-AGEXXXXXXXXXXXGPAAVELLCNSLQLDGSGLTTGALTKRVQSARDKRAALAELRARLPAASTAAAAADGSTDSGSSSNPAALVYVGDSTSDLGAMLDSDFGVVIGSNALLRRVCRRFGVRILPLAAA--------PLDPRRVPAGT---LYEAVGGWAEIRAFLFGVE 580          
BLAST of mRNA_Ecto-sp13_S_contig8330.19693.1 vs. uniprot
Match: U5D054_AMBTC (Uncharacterized protein n=2 Tax=Amborella trichopoda TaxID=13333 RepID=U5D054_AMBTC)

HSP 1 Score: 229 bits (585), Expect = 5.200e-63
Identity = 193/632 (30.54%), Postives = 285/632 (45.09%), Query Frame = 2
Query:  224 WQDCQLEAMRSLHHPWTLGLATGKTSLASFKNYVAQDAYFLKAFAKAYAYALAKAEDEEDIRAFHSLIGSVLEELGLHASYSAKWGIDVANTPPPVKATAEYVDFLMAVAS----------------DPTSSVAQVLAAMVPCMRLYAFLGQELRYAFPNWAESAYAEWIETYSSEDFEDAAGLVESLLDKNS---AGADYPSLFALYRKAMELEFAFFDAQLDGGTEAAMLEQSVGAEAGGQQGTSVQPGGKDAGDRGRFHGVHERLALLCVDFDDTLTEGDTTSLLVETA-----KAQRETPEDRV------DLGREWVLLTRTFLSKWSEAIEDSLSTKPSTTACTTNGSGAVDREGLELMLRKLEVVDLDSVSRVSDSKVLRGLTRDEVHSSLAGPLRSSWKVRPGMARCMSRALVSPFQ------------THVVSINWSQDVISRVLSETLLESHSSLSSTTGIDARGRVWAGETASPRLEGGCPASVSSNDLVFDEHGVSTGEIAVKIPGSFGKHQRFVDLAAMARESVASSESLPRLMTVYVGDSVTDLLAMLDADVGIVVGNSGSFEKVARAFGIDIRPLAS--VYEAMDGTEELPRTGAPSGSGQCVYRASQWAEIDVFLFG 1987
            W     E++ + + P+ + LA G   L +F++YVAQDA+FLK FA+AY  A   A+D++   +   L   VLEEL +H SY+ +WG+D+     P  AT +Y+DFLMA A+                + T   A  + AM PCMRLYAFLG+EL+  F N A+  Y +WI+ YSS+ FE AA  +E LLDK S    G +   +  LY +AM+LE  FF AQ         L                             H   E+  ++  DFD T T  D++++L E A     K ++   E  +      DL   W  L++ +  ++ + +ED +   PS  A         D +GL   L  L   +  + SRV++S VL+GL  +++              R G    +     S FQ             HV+S  W  D+I    S  LL+                                 S+ SN+ ++ E  VSTG I  ++     K + F D+     ES+   +   + ++VY+GDSV DLL +L+ADVGIV+G+S S  +V   FG+   PL S  V +  D  E+   +    G    +Y  S WAEI  F+ G
Sbjct:   14 WVKFLRESVFASYSPFIVCLAAGNLELDTFRHYVAQDAHFLKCFARAYEMAEDCADDDDAKASICELRKGVLEELKMHESYAEEWGVDLVKESTPSSATTKYIDFLMATAAGKVEGGKGPSRIATPFEKTKIAAYTVGAMTPCMRLYAFLGKELQ-RFVNSADHQYKKWIDIYSSDSFEVAALQIEELLDKLSISLTGEELEVIERLYHQAMKLEIEFFSAQPISQKTLVPLSN--------------------------VHKPSEQRLIIFSDFDLTCTVVDSSAILAEIAIRTAPKVEQNGSEQPIARQSSADLRNSWGALSQQYTEEYEQCVEDIV---PSDEA------EVFDYQGLCKALEHLSEFEKRANSRVNESGVLKGLNLEDIK-------------RAGERLILQDGCTSFFQQIVKRKDELNADVHVLSYCWCGDLIRSAFSSGLLD-------------------------------VLSIHSNEFIY-EGSVSTGGIVREVESPMDKSRVFKDVL----ESIGEPD---KRVSVYIGDSVGDLLCLLEADVGIVIGSSSSLRRVGSKFGVSFVPLLSGVVKKQRDFLEDSCSSSNWKGLSGTLYTVSSWAEIHAFILG 557          
BLAST of mRNA_Ecto-sp13_S_contig8330.19693.1 vs. uniprot
Match: A0A836B2K3_CHLIN (Thiamine phosphate synthase n=1 Tax=Chlamydomonas incerta TaxID=51695 RepID=A0A836B2K3_CHLIN)

HSP 1 Score: 238 bits (607), Expect = 7.700e-63
Identity = 218/642 (33.96%), Postives = 290/642 (45.17%), Query Frame = 2
Query:  140 PAPGRKSPRVMDGMRKDVGHGFTLPGSLWQDCQLEAMRSLHHPWTLGLATGKTSLASFKNYVAQDAYFLKAFAKAYAYALAKAE--DEEDIRAFHSLIGSVLEELGLHASYSAKWGID--VANTPPPVKATAEYVDFLMAVAS--DPTSSVAQVLAAMVPCMRLYAFLGQELRYAF----PNWAESA--YAEWIETYSSEDFEDAAGLVESLLDKNSAG-ADYPSLFALYRKAMELEFAFFDAQLDGGTEAAMLEQSVGAEAGGQQGTSVQPGGKDAGDRGRFHGVHERLALLCVDFDDTLTEGDTTSLLVETAKAQRETPEDRVDLG-REWVLLTRTFLSKWSEAIEDSLSTKPSTTACTTNGSGAVDREGLELMLRKLEVVDLDSVSRVSDSKVLRGLTRDEVHSSLAGPLRSSWKVRPGMARCMSRALVSPFQTHVVSINWSQDVISRVLSETLLESHSSLSSTTGIDARG-RVWAGETASPRLEGGCPASVSSNDLVFDEHGVSTGEIAVKIPGSFGKHQRFVDL--------AAMARESVASSESLPRLMTVYVGDSVTDLLAMLDADVGIVVGNSGSFEKVARAFGIDIRPLASVYEAMDGTEELPRTGAPSGSGQCVYRA-SQWAEIDVFLFGGE 1993
            PAPG  +    DG+ K+          LW + Q E   SLH P+  G+A G     +F++YVAQDAYFL  FA+AY  AL+KA   D+        L+  V EEL LH SY+AKWG+D  VA T P   AT  Y DFLM VA       SVA++LAAM+PC RLY FLG  L  A     P+ A  A  Y EW+ TYSS D+    GL E + ++ +   AD   L  LYR+AM+LE  FF AQ                                      +     R + L VDFD+T T  DT   L+  A A     + R   G   WV  T + L+    A +  L  +          + A D  GL+  L  L   D    + V    +LRG T  EV ++ AG      ++RP     +S AL      HV+S+NWS   +   L+     +           A   R+   E A P +E  C      N L  D  G++TG +A ++  +  K     +L        AA A +  + S S      VYVGDS +DL AMLD+D G+V+G++    +V R FGI I PLA+          L     P+G+   +Y A   WAEI  FLFG E
Sbjct:    5 PAPGLPA---TDGLAKE----------LWDNVQHEVFMSLHDPFVQGMAQGTLDKRAFQHYVAQDAYFLHYFARAYGIALSKALALDDSTFEDLSGLLRGVHEELQLHGSYAAKWGVDMTVAGTRPSA-ATKAYTDFLMNVADAEGQDGSVAEILAAMLPCARLYGFLGAALAGAHGPQAPDQAPPAHHYWEWVRTYSSADYLSVPGLKERMFERLAGKEADKAKLLRLYRRAMQLEAEFFAAQ-------------------------------------PYSPPPRRFSALVVDFDETCTAKDTIGGLMRLAAAAAG-QQGRATAGDAAWVAATSSRLAADYVAAQGELLGRLLPEGAPD--AAAYDAAGLDAFLAALSDFDAAMNAPVEACGILRGSTSAEVAAAGAG-----LQLRPQCREVLSGALGRGIPVHVLSVNWSDVYVGAALAAPATAAVXXXXXXXXXSALPVRLAGAEGAGPAVELRC------NSLELDGAGLTTGALAKRVQSARDKRAALAELRSRLPAAPAAAAVDGASDSGSDNPAALVYVGDSTSDLGAMLDSDFGVVIGSNALLRRVCRRFGIRILPLAAA--------PLDPRRVPAGT---LYEAVGGWAEIRAFLFGVE 570          
BLAST of mRNA_Ecto-sp13_S_contig8330.19693.1 vs. uniprot
Match: A0A8J5XNG5_DIALT (Thiamine phosphate synthase n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XNG5_DIALT)

HSP 1 Score: 237 bits (604), Expect = 1.930e-62
Identity = 191/566 (33.75%), Postives = 271/566 (47.88%), Query Frame = 2
Query:  209 LPGSLWQDCQLEAMRSLHHPWTLGLATGKTSLASFKNYVAQDAYFLKAFAKAYAYALAKAEDEEDIRAFHSLIGSVLEELGLHASYSAKWGIDVANTPPPVKATAEYVDFLMAVASDPTSSVAQVLAAMVPCMRLYAFLGQELRYAFPNWAESAYAEWIETYSSEDFEDAAGLVESLLDKNSAGADYPSLFALYRKAMELEFAFFDAQLDGGTEAAMLEQSVGAEAGGQQGTSVQPGGKDAGDRGRFHGVHERLALLCVDFDDTLTEGDTTSLLVETAKAQRETPEDRVDLGREWVLLTRTFLSKWSEAIEDSLSTKPSTTACTTNGSGAVDREGLELMLRKLEVVDLDSVSRVSDSKVLRGLTRDEVHSSLAGPLRSSWKVRPGMARCMS--RALVSPFQTHVVSINWSQDVISRVLSETLLESHSSLSSTTGIDARGRVWAGETASPRLEGGCPASVSSNDLVFDEHGVS---TGEI--AVKIPGSFGKHQRFVDLAAMARESVASSESLPRLMTVYVGDSVTDLLAMLDADVGIVVGNSGSFEKVARAFGIDIRPLASVYEAM 1885
            L   LW      A RSLH P+ L LA G    ASF+ YVAQDA+FL+AFA+AYA AL++ E +  I    SLI  V++EL LH  Y+AKW +D+A   P   AT+ Y +FL+A+A    + +A VLAAM PCMRLYAFLGQ L  AFP+ A  AYA+W+ TYSS++F   AG +E+LLD+ + G    +  A Y +AM+LE  FF +Q        +L  +                              +RL L  VDFD+T T+  T  LL + A       ++R     EW  L+ TF  +++ AIE  +       A     +  V+      M+ +L   +  +V      + LRG+   E   + AG  R   K+R G AR     RA  +  +  V+S+NW+  +    L   L             DA   V AG T     E       +   +  D H  +   TGE+  A  +  S  K   F  L A    + A       L+T+Y GDS+TDL  +L A +GIV+G+S S      + G+ ++PL +   A+
Sbjct:    5 LSSKLWASALPLATRSLHSPFVLRLAAGTLPRASFQGYVAQDAFFLRAFARAYALALSRCESDGAIGELSSLIAGVVDELALHHGYAAKWDLDLAGVRP-TAATSAYTEFLLALARS-DAPIAVVLAAMTPCMRLYAFLGQRLCAAFPD-ASHAYADWLRTYSSDEFGALAGRIEALLDECADGVPLDAARAAYTRAMQLELDFFASQPGVAPVDGLLAPA------------------------------DRL-LFAVDFDETATDAQTLPLLAQLAAEHAGAADERAARVAEWRTLSETFAREYTMAIERIVPPXXXXXAPPAGEAAVVE------MVERLSAFERRAVEAAERGRALRGVP--EAALAKAGAERV--KLRDGFARLAYALRAAGACERAEVISVNWAAQLARAALRARL-------------DAARPVGAGATVG--AEELVRLHCNEMPVAIDAHDGAPRTTGELRAAAGLHTSADKGAAFGQLCAEYARAHAGGAG--ELLTLYAGDSITDLQPLLAARIGIVLGHSSSLRAALSSLGVRVQPLVAARRAL 509          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8330.19693.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LE29_ECTSI0.000e+079.61Thiaminase II n=1 Tax=Ectocarpus siliculosus TaxID... [more]
A0A6H5J5C1_9PHAE5.260e-28869.61TENA_THI-4 domain-containing protein n=1 Tax=Ectoc... [more]
A0A0G4GYE5_VITBC1.550e-6832.56TENA_THI-4 domain-containing protein n=3 Tax=Vitre... [more]
A0A2V0PBE0_9CHLO4.370e-6832.73Thiamine phosphate synthase n=1 Tax=Raphidocelis s... [more]
A0A7J7QPC3_9CHLO1.050e-6631.90Thiamine phosphate synthase n=1 Tax=Scenedesmus sp... [more]
A0A383WBI9_TETOB1.140e-6631.00Thiamine phosphate synthase n=2 Tax=Tetradesmus ob... [more]
A0A2K3DGU0_CHLRE3.450e-6334.08Thiamine phosphate synthase n=1 Tax=Chlamydomonas ... [more]
U5D054_AMBTC5.200e-6330.54Uncharacterized protein n=2 Tax=Amborella trichopo... [more]
A0A836B2K3_CHLIN7.700e-6333.96Thiamine phosphate synthase n=1 Tax=Chlamydomonas ... [more]
A0A8J5XNG5_DIALT1.930e-6233.75Thiamine phosphate synthase n=2 Tax=Diacronema lut... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8330contigEcto-sp13_S_contig8330:452..6303 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score894.4
Seed ortholog evalue2.9e-257
Seed eggNOG ortholog2880.D8LE29
Model size2183
KEGG rclassRC00224,RC00652,RC02832
KEGG koko:K03707
KEGG ReactionR02133,R09993
KEGG Pathwayko00730,ko01100,map00730,map01100
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003993,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005829,GO:0006725,GO:0006766,GO:0006767,GO:0006772,GO:0006790,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0009058,GO:0009110,GO:0009228,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0017144,GO:0018130,GO:0019438,GO:0034641,GO:0042131,GO:0042364,GO:0042578,GO:0042723,GO:0042724,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044249,GO:0044271,GO:0044272,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046483,GO:0071704,GO:0072527,GO:0072528,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576
Exons11
EggNOG free text desc.TENA/THI-4/PQQC family
EggNOG OGs2QQU0@2759,COG0819@1
Ec32 ortholog descriptionThiaminase II
Ec32 orthologEc-05_004270.1
EC3.5.99.2
Cds size1827
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03000
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8330.19693.1prot_Ecto-sp13_S_contig8330.19693.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8330 621..6116 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464103.5277507-UTR-Ecto-sp13_S_contig8330:451..6201681464103.5277507-UTR-Ecto-sp13_S_contig8330:451..620Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8330 452..620 +
1681464103.6559803-UTR-Ecto-sp13_S_contig8330:6116..63031681464103.6559803-UTR-Ecto-sp13_S_contig8330:6116..6303Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8330 6117..6303 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464103.5420163-CDS-Ecto-sp13_S_contig8330:620..6661681464103.5420163-CDS-Ecto-sp13_S_contig8330:620..666Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8330 621..666 +
1681464103.5522125-CDS-Ecto-sp13_S_contig8330:1267..15481681464103.5522125-CDS-Ecto-sp13_S_contig8330:1267..1548Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8330 1268..1548 +
1681464103.5623329-CDS-Ecto-sp13_S_contig8330:1778..19131681464103.5623329-CDS-Ecto-sp13_S_contig8330:1778..1913Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8330 1779..1913 +
1681464103.5734673-CDS-Ecto-sp13_S_contig8330:2408..24891681464103.5734673-CDS-Ecto-sp13_S_contig8330:2408..2489Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8330 2409..2489 +
1681464103.5829213-CDS-Ecto-sp13_S_contig8330:2714..27981681464103.5829213-CDS-Ecto-sp13_S_contig8330:2714..2798Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8330 2715..2798 +
1681464103.5919535-CDS-Ecto-sp13_S_contig8330:3009..32641681464103.5919535-CDS-Ecto-sp13_S_contig8330:3009..3264Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8330 3010..3264 +
1681464103.601695-CDS-Ecto-sp13_S_contig8330:3472..35801681464103.601695-CDS-Ecto-sp13_S_contig8330:3472..3580Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8330 3473..3580 +
1681464103.6121123-CDS-Ecto-sp13_S_contig8330:4008..41311681464103.6121123-CDS-Ecto-sp13_S_contig8330:4008..4131Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8330 4009..4131 +
1681464103.6227055-CDS-Ecto-sp13_S_contig8330:4588..47881681464103.6227055-CDS-Ecto-sp13_S_contig8330:4588..4788Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8330 4589..4788 +
1681464103.6331432-CDS-Ecto-sp13_S_contig8330:5306..53561681464103.6331432-CDS-Ecto-sp13_S_contig8330:5306..5356Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8330 5307..5356 +
1681464103.6433616-CDS-Ecto-sp13_S_contig8330:5652..61161681464103.6433616-CDS-Ecto-sp13_S_contig8330:5652..6116Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8330 5653..6116 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8330.19693.1

>prot_Ecto-sp13_S_contig8330.19693.1 ID=prot_Ecto-sp13_S_contig8330.19693.1|Name=mRNA_Ecto-sp13_S_contig8330.19693.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=609bp
MDGMRKDVGHGFTLPGSLWQDCQLEAMRSLHHPWTLGLATGKTSLASFKN
YVAQDAYFLKAFAKAYAYALAKAEDEEDIRAFHSLIGSVLEELGLHASYS
AKWGIDVANTPPPVKATAEYVDFLMAVASDPTSSVAQVLAAMVPCMRLYA
FLGQELRYAFPNWAESAYAEWIETYSSEDFEDAAGLVESLLDKNSAGADY
PSLFALYRKAMELEFAFFDAQLDGGTEAAMLEQSVGAEAGGQQGTSVQPG
GKDAGDRGRFHGVHERLALLCVDFDDTLTEGDTTSLLVETAKAQRETPED
RVDLGREWVLLTRTFLSKWSEAIEDSLSTKPSTTACTTNGSGAVDREGLE
LMLRKLEVVDLDSVSRVSDSKVLRGLTRDEVHSSLAGPLRSSWKVRPGMA
RCMSRALVSPFQTHVVSINWSQDVISRVLSETLLESHSSLSSTTGIDARG
RVWAGETASPRLEGGCPASVSSNDLVFDEHGVSTGEIAVKIPGSFGKHQR
FVDLAAMARESVASSESLPRLMTVYVGDSVTDLLAMLDADVGIVVGNSGS
FEKVARAFGIDIRPLASVYEAMDGTEELPRTGAPSGSGQCVYRASQWAEI
DVFLFGGE*
back to top

mRNA from alignment at Ecto-sp13_S_contig8330:452..6303+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8330.19693.1 ID=mRNA_Ecto-sp13_S_contig8330.19693.1|Name=mRNA_Ecto-sp13_S_contig8330.19693.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5852bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8330:452..6303+ (Ectocarpus species13 EcNAP12_S_4_19m)
CTTCTCCGCCGCTCGACGCATACCGGCTTTCTCTACAGCAGCAGCACAAA CATTCACCGACCTTCGAGATACCGGGCACTCCAAACCTCGCAGCACATGG CAACTTCTCCCTTGGGCTCACGCTCTGCCACTCGATGTACCTGCTCCTGG TCGGAAGTCTCCGCGTGTGATGGACGGCATGCGAAAGGATGTTGGTCATG GATTCACCCTCCCAGGTAATGGTGTGAAGAACGTTTAACGGTTGTAGTCT GGTCTTCAGGGGTGCGCACAGCAGTACCATCTGTGTACACTTTGCTCCCA TACTTGGTGCTTCCTTGTGCATCGCGTTGTTCACACGGCTGTTACACTTC TTCGTTATACAACAATACATTGTAGTGCGCTGCAATGCTGCCACCATGTC CTCTTTTTTCGTACCATTGGCCAATGTACAGGCAAATTACCCTGTTGTAA CCCTAACGATCACCTGTGGCCCAAACGCTTACCTGTAGAACACCGTGAAG TATAGCAGTACACATGAACCTGTTAATGGAAGCAACTGGCACAGCGCTAC AACAGTAGTAATATCGTGCTTCTCCTCTGCAACGCTTGTGGGCAGAACAG ATGGCCAGCCCTTTCTCGGTCCACTTGCGGCTAGTTGCAGCGTCAGATCC GGGAACCTGCCACTGCTGTTGTCCGCCCGGCATGCTGGTCACGCTGGAGC GGTTGACCTTTTCCGCACTGATCCTCAGCAGCATGACGTCCCTGCAGTGT AGGCGACACCGCGTTGAAGAATAGATTACACTCATTCCCCATTGATCACA TTGACATGGTGCCCAGGTTCTCTGTGGCAAGATTGCCAGCTGGAAGCGAT GCGATCGCTGCATCACCCGTGGACCCTGGGACTGGCCACCGGGAAAACAA GTCTCGCCAGCTTCAAGAACTACGTCGCTCAGGATGCCTACTTTTTGAAA GCGTTCGCAAAGGCCTACGCCTACGCCCTGGCCAAGGCGGAGGACGAGGA AGATATCCGTGCTTTTCACTCGCTGATCGGGTCTGTGTTGGAGGAGCTTG GTCTTCACGCCTCCTACTCGGCGAAGTGGGGAATTGACGTGGCGAACGTG AGAGAGCCAAAACGACTGGTATTACTCCGTGCAAATTGGGTCCTGTACAC CCCTGAATTTCGGTCAAACAGGGGTGTGGAATGTTGATCATGGTTGTTTC CCCTCCGTAAAGCCGCACAGCGACTGAGCGTATCTTTTGTATCCCATCTA TCAGGGTCACAGGACTCTTAAGCACAGCAATTTCGTTGAAAAAATCGTCT CGAACCCCGTGGTGCTCTCCTTGTCAGACGCCTCCTCCAGTTAAGGCAAC TGCAGAGTATGTGGACTTCCTTATGGCCGTGGCATCGGACCCGACATCTT CAGTTGCCCAAGTGCTTGCCGCGATGGTGCCATGTATGCGGCTGTACGCT TTTCTAGGCCAGGTGTGAAGGCGTTAGTTCTGACTTGGAGGGTAGGGCGA GCACGGGCTTTGTCCCGTCTTGGCCGCTTGCGCTCCCAATCGTGGGTTGT TTGCCATTTGTGTCGGTTTGTCCAGTAGAAACGTTTGCTCTCGGCGAAGG GGCGGTCGAGTATCGTACACAGTAGTTGAGGAAGAGTCCCAGCTCTCTAC CGAAAACAAGCAAATACAGGTTTCGGCGAAAGAACTACGAGAGCGAGCTA TGAAGTATATGTTAAGCGTACGTCCCAAGTGCGAGTTTCGGGGTGTTGTC ACGATGGATCATCTCATTGTCTTGGTGCTCTGTCTTGTGTGTTGGGGTGA AAACCTAGGGTCCGGTGAACAGAAAACCTGTGTGCAGGCGACGCTCATTT GCTGGTTTGTACCTGGCGAGCCTGCAGATTGGCTTATATCAACGGCAGTT CCACCAATGCAATGGTATGACATACGCCAACGTGCTGTCTTCCCTGTTGT GCCTCAGGAGCTTCGGTATGCCTTTCCGAATTGGGCAGAGAGCGCCTACG CCGAATGGATTGAGACCTATAGCTCTGAAGACTTTGAGGTGGGCTGGTTC GCATCATCTGTGGCCGAGACACGTCCTGTATCTGATGTGTGATGTATGCA CGCAACGTCGGCGTTTCGTTCCAGCCAAAATGTTGGAATGATAGCAGCTA CGGACCTGTTTTGTTACTCGATGAACGTGTCGTCAGGGAGGGAGCTCTTC TAGGTTAATCACATTGTACCTTATCCTATTTATCACCCGTGATCCGTCTT GCCCGTCGCACAGGATGCTGCTGGCCTGGTGGAGTCACTTCTGGATAAAA ACTCGGCTGGCGCTGACTATCCTTCCCTCTTTGCTCTCTACCGCAAGGTA CCATGCGGTGTGAGAGACTTAACACTGCAACTTTAAGCTTTTGCCAAGCA GCGTCGGCGGCCGTCGTTCGTGCGCCTTCTATATGGTGATGTTTGCGATG CTATGTGGCAAAAGGTCTCAAGCCAGATATATCTTGGTTGGCCTAAGTGA CAAACGTTCAATCATACCGTGACTGCCCTTGTGTTTTTGTTTTTTTCACA CATTCCAGGCCATGGAGTTGGAGTTTGCGTTCTTCGATGCGCAACTAGAC GGGGGCACCGAAGCTGCCATGCTTGAGCAGTCGGTAGGCGCAGAGGCAGG TGGTCAACAAGGCACAAGTGTCCAACCGGGAGGGAAAGACGCTGGCGATC GCGGGCGTTTCCACGGCGTGCACGAGCGGCTTGCACTGCTTTGTGTGGAT TTCGATGACACATTGACCGAAGGCGACACCACCAGCCTTCTCGTGGAGAC AGCCAAAGCTCAGGTGAGATTCGGGTGCCGTGTAACGCTTGCAATGTTCT TTCTCGGTTCAGAGGTACACGGCCTGTCAATCTTCCAACTTTCCATCTTT GCGGGTGCAGTTCCAGCCGAGCAGACGCTTGAAGTTCCACAACCCAACGG GCGCTAGATGCGTTTGAAGATCCCTCGCCTTGCTGACCGTCGTGACGTCG GACGAATCCTGTGCTCGGCAGCGGGAAACTCCAGAAGATCGGGTGGATCT CGGGCGCGAGTGGGTGCTTTTGACAAGGACATTTTTGAGCAAGTGGAGCG AGGCAATTGAGGACAGCTTATCCACCAAGGTAGTTTGTTTCATTTTGTTT TTCTGGTAGTGTTGAGACGACGGTACTGCTGTTGTGCACTCTTACGTAGC CCGTTCCGGCTCAGGCCAGTCTGCCCGCGGTGCTTGTGGTGACGGTATCG AAATCAAGCCATTCCTTTTTTCTTCTGTTCTGTTTGCTGTTTGTTTCCTT TCCTACTCCGTCGCGCGCTTCACGGGGATGGGTATGCACCGGGGCTATTG GTTGGCGATCATGGACTGTAGTCGAGTAGAACCCAGTGTCGCCATCTGCC GTGCACGTTGGCGTTCTGTCGCACAACCTAGTATATATGATTCCTAAACC GGAACCCACCTGTACCCTGTGGCACGCGCAAGCGTGTGCTAATAATGCCC CTTATTGGCGACGTGCGTACGCGCTTTGTGCTTGGGCGGGGCCATTTGTC GTGAAAGCCCTCCACCACCGCGTGCACCACGAACGGTTCTGGAGCTGTCG ACCGTGAAGGTTTGGAGTTGATGCTGCGAAAGCTGGAGGTGGTGGACCTT GACTCGGTGTCTAGGGTTTCCGACAGCAAGGTGAGGGAGCTGGCACGAGA GGCACGTAGTGCTACAGTCGTTGGCGGCACATGTTTTGCACGCTTTGTTC GAGTAGCTTTTAGAGATGAGGTTATAGAGACCGGAACGGCCCACGAAAAA AACTTACCGTACACGGACGCACGTCAGATCATCCCATTGTTCTCAGAAGT ATTTATTTTCCGTGGAGTTGTCTTGTTCGCTTGAGCCCAACGAGGAGTGC CAATAGTGCCCGGCCGAAAATGAGTCACCTCCTGTTCTTTCTTTGACAGA ATGTTCTGTACGATCATTTAGAACATCGTTGATCGCCCTTGTCGACAATA CATTTCGTTTTTTTCACTGCTACCTGCTGAGTCGCCGTGTTTGAGCAAGT CTAGTCACCTAAAACTGCGTTACGAGATCATGAGGGGGCGTGGAAGGGTT TCTCGTACTAATTTGTTCTCTCCTGGGGCCCCGTAAGGTACTGCGAGGGC TAACAAGAGATGAGGTACACTCATCCCTTGCTGGACCGTTGAGATCGTCC TGGAAAGTGCGTCCAGGCATGGCCCGGTGCATGTCCCGTGCCTTGGTCTC TCCGTTCCAAACCCACGTCGTTTCTATCAATTGGAGCCAGGACGTCATTT CGAGAGTTCTTTCGGAGACACTGTTGGAAAGTCACAGGTGAGTGGCTTGG CGTCACACAGAGCTGGCTTTACCCCACAAAGGAGAGTTATGCTTTCGGGT TGGTGTTGTCGTCCACTCGAAGGTGTCAATCAAATGTCCACGGAACCGAC GATATTTTCAAGCAGCAATCGTTGTGCAAAGGTTGGTACGATTGCTAAGA TGATGTGATTGGTCAACAGGCCAGGGTGCAGCGCATTCCGTAATCGACCT TACCCCTTCCCCACTGTCGTCGAGGTCCCGTGAAAAAGGCTGGCCGGCAT CGTGCAGTGAGAAGTTTTAAGTCGGCCGATGACGGGATCGAAAGCTGCCA TGACCTGCGCGGCTCCAGAGTCCACGTGACGTTGCTGGTGCTAGCCCCCG TCGCCCATGCGGCCGATATGGATCTGGGTCCGATTCTGCCCTCTTGCCAC CTTATCTGCACACATCGTTTATTTTTTGCAAAGTTCAACGTTACCTGGCC TAACCGCCTCATCCCACCCCGCGTGTATCTGTGGAAACTGGCAACCTATC GACAGCTCTTTGTCCTCAACGACAGGGATCGATGCGAGGGGTCGTGTTTG GGCAGGTAGGCTGCGAGCTCCGCTCGGGAAGGTTGGCCGTGTTGTGTGGC TCATGCCGTGAAGTGAAAATCCAACAGGAACCAGTAGAGATTATACTTTG TAACCTACGACACGGTTGTGTCGCCCGACGTCGCCTTCCACGTGGTATTC ACTTACCATGGACCTCTGGTGTTGTGTCGCCTGACCTTTGCCTTCCATAT GCATTCAGATACCATCGAACACCCGTGTAGTGTTCTCAGAGCTTCAGCGA AAGGGCAATCTTAAGTCTGTATCCACCTGTCCTTACACATCCGTGTCCCA GGCGAAACGGCCTCGCCCCGTCTCGAAGGAGGCTGCCCTGCATCCGTCTC ATCCAACGACCTCGTATTCGACGAGCACGGGGTGTCAACAGGCGAGATTG CTGTGAAGATACCAGGATCATTCGGCAAGCATCAGCGTTTCGTAGACCTA GCGGCGATGGCCCGAGAATCTGTCGCCAGCTCGGAGTCTTTGCCAAGACT CATGACGGTCTATGTGGGGGACAGCGTCACGGACTTACTGGCGATGCTGG ATGCCGACGTCGGAATTGTGGTCGGCAATAGTGGCAGCTTTGAGAAAGTA GCCCGCGCTTTCGGGATTGACATTCGTCCCCTCGCATCCGTATACGAGGC GATGGATGGCACAGAGGAGTTGCCAAGAACGGGGGCGCCGTCAGGCTCTG GACAGTGCGTATACCGTGCTTCCCAATGGGCAGAGATCGACGTGTTTTTG TTCGGTGGCGAATGAATGTCTTCAATGATGACCTTTTCCTCTTGAATCGG CTGGCCACTCCGTCAACCTTTACCTTCAAATCTTCGTCATGCCACTTCTT CACTGTCCCTCCCAGTTTATACGCATACCGCACGATCTTGTCTCGAAAAG AAGAGCTCCGATCTGGGGTTTATACTGGAGTCCTCTACGGTGGTGCATGT CT
back to top

Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8330:452..6303+

>mRNA_Ecto-sp13_S_contig8330.19693.1 ID=mRNA_Ecto-sp13_S_contig8330.19693.1|Name=mRNA_Ecto-sp13_S_contig8330.19693.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1827bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8330:452..6303+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACGGCATGCGAAAGGATGTTGGTCATGGATTCACCCTCCCAGGTTC
TCTGTGGCAAGATTGCCAGCTGGAAGCGATGCGATCGCTGCATCACCCGT
GGACCCTGGGACTGGCCACCGGGAAAACAAGTCTCGCCAGCTTCAAGAAC
TACGTCGCTCAGGATGCCTACTTTTTGAAAGCGTTCGCAAAGGCCTACGC
CTACGCCCTGGCCAAGGCGGAGGACGAGGAAGATATCCGTGCTTTTCACT
CGCTGATCGGGTCTGTGTTGGAGGAGCTTGGTCTTCACGCCTCCTACTCG
GCGAAGTGGGGAATTGACGTGGCGAACACGCCTCCTCCAGTTAAGGCAAC
TGCAGAGTATGTGGACTTCCTTATGGCCGTGGCATCGGACCCGACATCTT
CAGTTGCCCAAGTGCTTGCCGCGATGGTGCCATGTATGCGGCTGTACGCT
TTTCTAGGCCAGGAGCTTCGGTATGCCTTTCCGAATTGGGCAGAGAGCGC
CTACGCCGAATGGATTGAGACCTATAGCTCTGAAGACTTTGAGGATGCTG
CTGGCCTGGTGGAGTCACTTCTGGATAAAAACTCGGCTGGCGCTGACTAT
CCTTCCCTCTTTGCTCTCTACCGCAAGGCCATGGAGTTGGAGTTTGCGTT
CTTCGATGCGCAACTAGACGGGGGCACCGAAGCTGCCATGCTTGAGCAGT
CGGTAGGCGCAGAGGCAGGTGGTCAACAAGGCACAAGTGTCCAACCGGGA
GGGAAAGACGCTGGCGATCGCGGGCGTTTCCACGGCGTGCACGAGCGGCT
TGCACTGCTTTGTGTGGATTTCGATGACACATTGACCGAAGGCGACACCA
CCAGCCTTCTCGTGGAGACAGCCAAAGCTCAGCGGGAAACTCCAGAAGAT
CGGGTGGATCTCGGGCGCGAGTGGGTGCTTTTGACAAGGACATTTTTGAG
CAAGTGGAGCGAGGCAATTGAGGACAGCTTATCCACCAAGCCCTCCACCA
CCGCGTGCACCACGAACGGTTCTGGAGCTGTCGACCGTGAAGGTTTGGAG
TTGATGCTGCGAAAGCTGGAGGTGGTGGACCTTGACTCGGTGTCTAGGGT
TTCCGACAGCAAGGTACTGCGAGGGCTAACAAGAGATGAGGTACACTCAT
CCCTTGCTGGACCGTTGAGATCGTCCTGGAAAGTGCGTCCAGGCATGGCC
CGGTGCATGTCCCGTGCCTTGGTCTCTCCGTTCCAAACCCACGTCGTTTC
TATCAATTGGAGCCAGGACGTCATTTCGAGAGTTCTTTCGGAGACACTGT
TGGAAAGTCACAGCTCTTTGTCCTCAACGACAGGGATCGATGCGAGGGGT
CGTGTTTGGGCAGGCGAAACGGCCTCGCCCCGTCTCGAAGGAGGCTGCCC
TGCATCCGTCTCATCCAACGACCTCGTATTCGACGAGCACGGGGTGTCAA
CAGGCGAGATTGCTGTGAAGATACCAGGATCATTCGGCAAGCATCAGCGT
TTCGTAGACCTAGCGGCGATGGCCCGAGAATCTGTCGCCAGCTCGGAGTC
TTTGCCAAGACTCATGACGGTCTATGTGGGGGACAGCGTCACGGACTTAC
TGGCGATGCTGGATGCCGACGTCGGAATTGTGGTCGGCAATAGTGGCAGC
TTTGAGAAAGTAGCCCGCGCTTTCGGGATTGACATTCGTCCCCTCGCATC
CGTATACGAGGCGATGGATGGCACAGAGGAGTTGCCAAGAACGGGGGCGC
CGTCAGGCTCTGGACAGTGCGTATACCGTGCTTCCCAATGGGCAGAGATC
GACGTGTTTTTGTTCGGTGGCGAATGA
back to top