mRNA_Ecto-sp13_S_contig8325.19683.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8325.19683.1
Unique NamemRNA_Ecto-sp13_S_contig8325.19683.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8325.19683.1 vs. uniprot
Match: D7G5Q5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Q5_ECTSI)

HSP 1 Score: 274 bits (701), Expect = 4.740e-91
Identity = 145/199 (72.86%), Postives = 166/199 (83.42%), Query Frame = 1 
Query:    1 MASRTTPTNEDIDAVFTSPQVASGLNAQSQPFIPGQRWCPSTSNHGASESRGASGQTHFHVETIQTGRGTIRRYTTPSLTSEIKASSTAEMPA-RSRTPMGGNDEEDSRTTEPATAAELPIAGHENTLGGPDEANVAGLIEEMKDEEGETAVV-SPTESSFST-TGGDGGRKWKGVHVGVWLAIGAGVAVGAALWSRRR 588
            MASR TPT E+IDAV++S Q A G+N Q+QPFIPGQRW PSTSN+G S SRGA GQ  FHVET QTGRGTIRR+TTPSLTS+ +A+S A+MP  +S TP+ GNDEEDSR  EP  AAE+P+A +ENTLGGPD A+VAGLIEE KDEEGETA V S TESS S+ TGGDG  KWKG+H+GVWLA+GAGVAVGAALWSRRR
Sbjct:    1 MASRATPTAEEIDAVYSSAQAAIGMNMQAQPFIPGQRWQPSTSNNGGSHSRGAGGQAQFHVETCQTGRGTIRRHTTPSLTSKNEANSVAKMPTTQSSTPVAGNDEEDSRAIEPVIAAEMPVASNENTLGGPDVAHVAGLIEESKDEEGETAAVASSTESSSSSPTGGDGRHKWKGIHIGVWLAVGAGVAVGAALWSRRR 199
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BLAST of mRNA_Ecto-sp13_S_contig8325.19683.1 vs. uniprot
Match: D7G5Q4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5Q4_ECTSI)

HSP 1 Score: 188 bits (478), Expect = 5.580e-58
Identity = 98/132 (74.24%), Postives = 109/132 (82.58%), Query Frame = 1 
Query:  112 WCPSTSNHGASESRGASGQTHFHVETIQTGRGTIRRYTTPSLTSEIKASSTAEMPARSRTPMGGNDEEDSRTTEPATAAELPIAGHENTLGGPDEANVAGLIEEMKDEEGETAVVSPTESSFSTTGGDGGRK 507
            WCPSTSNHGAS+SRGASGQ HFHVE IQTGRGTIRRYTTPSLTSE + + +A+MPA S  P+   DEEDSR T+P TAAE+PIA +ENTL GPD A+VAGL EE KDEEG+TAV S TESS S TGGDGG K
Sbjct:   11 WCPSTSNHGASQSRGASGQAHFHVEAIQTGRGTIRRYTTPSLTSENEINISAKMPAGSSMPVADIDEEDSRATDPVTAAEVPIASNENTLAGPDAADVAGLFEEAKDEEGKTAVASSTESSSSPTGGDGGHK 142
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BLAST of mRNA_Ecto-sp13_S_contig8325.19683.1 vs. uniprot
Match: D7G5N7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5N7_ECTSI)

HSP 1 Score: 130 bits (328), Expect = 1.440e-35
Identity = 70/94 (74.47%), Postives = 76/94 (80.85%), Query Frame = 1 
Query:  295 MGGNDEEDSRTTEPATAAELPIAGHENTLGGPDEANVAGLIEEMKDEEGETAVVSPTESSFST-TGGDGGRKWKGVHVGVWLAIGAGVAVGAAL 573
            MGGNDEED R +EP TAAE+ IA   + +GGPDEA+VAGLIEE KDEEGETAV S TE      TGGDGGRK KG+HVGVWLAIGAGVAVGAAL
Sbjct:    1 MGGNDEEDPRASEPVTAAEVDIASDGSVVGGPDEADVAGLIEETKDEEGETAVASSTEXXXXXXTGGDGGRKRKGLHVGVWLAIGAGVAVGAAL 94
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8325.19683.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7G5Q5_ECTSI4.740e-9172.86Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G5Q4_ECTSI5.580e-5874.24Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G5N7_ECTSI1.440e-3574.47Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8325contigEcto-sp13_S_contig8325:4023..5303 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size644
Hectar predicted targeting categoryother localisation
Exons3
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_008730.1
Cds size591
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464102.750762-CDS-Ecto-sp13_S_contig8325:4022..41581681464102.750762-CDS-Ecto-sp13_S_contig8325:4022..4158Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8325 4023..4158 +
1681464102.7637992-CDS-Ecto-sp13_S_contig8325:4428..45381681464102.7637992-CDS-Ecto-sp13_S_contig8325:4428..4538Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8325 4429..4538 +
1681464102.7732468-CDS-Ecto-sp13_S_contig8325:4905..52501681464102.7732468-CDS-Ecto-sp13_S_contig8325:4905..5250Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8325 4906..5250 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464102.782817-UTR-Ecto-sp13_S_contig8325:5250..53031681464102.782817-UTR-Ecto-sp13_S_contig8325:5250..5303Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8325 5251..5303 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8325.19683.1prot_Ecto-sp13_S_contig8325.19683.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8325 4023..5250 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8325.19683.1

>prot_Ecto-sp13_S_contig8325.19683.1 ID=prot_Ecto-sp13_S_contig8325.19683.1|Name=mRNA_Ecto-sp13_S_contig8325.19683.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=197bp
MASRTTPTNEDIDAVFTSPQVASGLNAQSQPFIPGQRWCPSTSNHGASES
RGASGQTHFHVETIQTGRGTIRRYTTPSLTSEIKASSTAEMPARSRTPMG
GNDEEDSRTTEPATAAELPIAGHENTLGGPDEANVAGLIEEMKDEEGETA
VVSPTESSFSTTGGDGGRKWKGVHVGVWLAIGAGVAVGAALWSRRR*
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mRNA from alignment at Ecto-sp13_S_contig8325:4023..5303+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8325.19683.1 ID=mRNA_Ecto-sp13_S_contig8325.19683.1|Name=mRNA_Ecto-sp13_S_contig8325.19683.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1281bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8325:4023..5303+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCATCGAGGACGACACCCACGAACGAGGACATAGACGCCGTGTTCAC
GTCTCCTCAAGTTGCGAGCGGCTTGAACGCGCAATCTCAACCGTTCATCC
CGGGACAACGGTGGTGCCCGTCTACGAGCAACCACGGTGAGAACGGATTT
TGAATTGCGATCAGTGTTCCGATAGATGACATATGTATAATCGGCGAAGA
GAGAAGAGAGGGCACACACGTATAGAGAGAATGTTCGGTAAGGGGACTAC
GCGTGGCGCATTTTGGTGACGATCAAGGTCAATACGCATCTCGTGAATGA
ATCCGCCCTCTCACTGTCACTTGGAGTTATCGGCAGAATATCCCATCTTC
GTGCCAACGATCCGGCCGACTTTCACCCTTTCCAACCCTGCCAATGGCAA
CAATAGGTGCCTCCGAGAGCCGAGGAGCGTCAGGTCAGACCCACTTCCAC
GTCGAGACGATTCAGACAGGACGAGGTACCATCCGCCGGTACACAACCCC
TTCGTTGACTTCAGAGGTGTGTATTTCCACACTCAGATGGGCCCGCAGAT
GGAAACCATTACTTCTTCATGTACACCCAAGGGTCACATGAAACTTATCT
ATACAACAACCAATCTACGCTGTTCCCCGATGATTGAGTCCAAACTCTTG
GTTGCAAGGATGTGCACAGCAGTTCAACGAAGAGAAGGGATGGGCAGATA
AAGAGTGTACATACAATAGCTTGCACATTGACCAACAACGGCGGATCAGT
ACGACGTAGCGGTTGTTGCGTCTGCGTGATTATTCTATAACCTGGCCATT
TTATTACATAGCTGAACTCTTCTCCCCTTTCCGACTCTCCGTTGTCCCAA
CCTTTACCGACCATTGACGTGTATGTATCGCAGATCAAGGCCAGCAGTAC
GGCCGAGATGCCTGCTCGATCGAGGACGCCAATGGGAGGGAATGACGAGG
AGGACTCCAGGACCACCGAACCAGCTACGGCGGCCGAGTTGCCGATCGCA
GGCCACGAAAACACGCTGGGAGGGCCAGATGAGGCTAACGTGGCGGGTTT
GATCGAGGAAATGAAGGATGAGGAGGGCGAGACAGCGGTGGTATCACCAA
CGGAGTCTTCTTTTTCTACGACGGGCGGCGACGGAGGACGCAAGTGGAAG
GGAGTCCACGTAGGGGTCTGGCTGGCCATCGGTGCCGGCGTTGCTGTCGG
GGCTGCTCTGTGGTCGCGACGCCGCTGAGGCCACCCCACGAAGCGTCGCT
TGCAAAAGACATGTGGCGAGGATGCGGGGTA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8325:4023..5303+

>mRNA_Ecto-sp13_S_contig8325.19683.1 ID=mRNA_Ecto-sp13_S_contig8325.19683.1|Name=mRNA_Ecto-sp13_S_contig8325.19683.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=591bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8325:4023..5303+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCATCGAGGACGACACCCACGAACGAGGACATAGACGCCGTGTTCAC
GTCTCCTCAAGTTGCGAGCGGCTTGAACGCGCAATCTCAACCGTTCATCC
CGGGACAACGGTGGTGCCCGTCTACGAGCAACCACGGTGCCTCCGAGAGC
CGAGGAGCGTCAGGTCAGACCCACTTCCACGTCGAGACGATTCAGACAGG
ACGAGGTACCATCCGCCGGTACACAACCCCTTCGTTGACTTCAGAGATCA
AGGCCAGCAGTACGGCCGAGATGCCTGCTCGATCGAGGACGCCAATGGGA
GGGAATGACGAGGAGGACTCCAGGACCACCGAACCAGCTACGGCGGCCGA
GTTGCCGATCGCAGGCCACGAAAACACGCTGGGAGGGCCAGATGAGGCTA
ACGTGGCGGGTTTGATCGAGGAAATGAAGGATGAGGAGGGCGAGACAGCG
GTGGTATCACCAACGGAGTCTTCTTTTTCTACGACGGGCGGCGACGGAGG
ACGCAAGTGGAAGGGAGTCCACGTAGGGGTCTGGCTGGCCATCGGTGCCG
GCGTTGCTGTCGGGGCTGCTCTGTGGTCGCGACGCCGCTGA
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