mRNA_Ecto-sp13_S_contig8317.19673.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8317.19673.1
Unique NamemRNA_Ecto-sp13_S_contig8317.19673.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8317.19673.1 vs. uniprot
Match: D7FJI6_ECTSI (MORN repeat variant family protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FJI6_ECTSI)

HSP 1 Score: 134 bits (336), Expect = 1.930e-31
Identity = 121/127 (95.28%), Postives = 124/127 (97.64%), Query Frame = 1 
Query:    1 IGSGSAGQRGDSSMPGWLWDTVFQYPLSEGDTRTQYSDGSTFVGPLKDGMRHGKGCYFFQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLWIQGKKKSGVFTY 381
            +GS + G RGDSSMPGWLWDTVFQYPLSEGDTRTQYSDGSTFVGPLKDGMRHGKGCYFFQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLW+QGKKKSGVFTY
Sbjct:  530 VGSETRGARGDSSMPGWLWDTVFQYPLSEGDTRTQYSDGSTFVGPLKDGMRHGKGCYFFQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLWVQGKKKSGVFTY 656
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8317.19673.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJI6_ECTSI1.930e-3195.28MORN repeat variant family protein n=2 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8317contigEcto-sp13_S_contig8317:20..4007 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size882
Hectar predicted targeting categoryother localisation
Exons6
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-04_003590.1
Cds size531
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8317.19673.1prot_Ecto-sp13_S_contig8317.19673.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8317 821..3936 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464101.875772-UTR-Ecto-sp13_S_contig8317:19..2101681464101.875772-UTR-Ecto-sp13_S_contig8317:19..210Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8317 20..210 +
1681464101.8872693-UTR-Ecto-sp13_S_contig8317:492..5611681464101.8872693-UTR-Ecto-sp13_S_contig8317:492..561Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8317 493..561 +
1681464101.897388-UTR-Ecto-sp13_S_contig8317:800..8201681464101.897388-UTR-Ecto-sp13_S_contig8317:800..820Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8317 801..820 +
1681464101.9520082-UTR-Ecto-sp13_S_contig8317:3936..40071681464101.9520082-UTR-Ecto-sp13_S_contig8317:3936..4007Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8317 3937..4007 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464101.907331-CDS-Ecto-sp13_S_contig8317:820..8911681464101.907331-CDS-Ecto-sp13_S_contig8317:820..891Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8317 821..891 +
1681464101.9191203-CDS-Ecto-sp13_S_contig8317:1277..14251681464101.9191203-CDS-Ecto-sp13_S_contig8317:1277..1425Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8317 1278..1425 +
1681464101.9303875-CDS-Ecto-sp13_S_contig8317:1765..19371681464101.9303875-CDS-Ecto-sp13_S_contig8317:1765..1937Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8317 1766..1937 +
1681464101.9414053-CDS-Ecto-sp13_S_contig8317:3796..39361681464101.9414053-CDS-Ecto-sp13_S_contig8317:3796..3936Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8317 3797..3936 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8317.19673.1

>prot_Ecto-sp13_S_contig8317.19673.1 ID=prot_Ecto-sp13_S_contig8317.19673.1|Name=mRNA_Ecto-sp13_S_contig8317.19673.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=177bp
MTCSTATGHSTSPIALASRVCGYRVRRRVACSPTHLAGGISGSCKQGADT
GEGLSCILTARATRDSGKTTRNTGREPRGTPQAIVTWGSGFTESRTGRAR
TITPRGRNTKGSSMVASATAAEPTSTPTATTTRETSTTAECTAWASTAGP
TEMCTEALGRTTAGVDEAATSGPSWG*
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mRNA from alignment at Ecto-sp13_S_contig8317:20..4007+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8317.19673.1 ID=mRNA_Ecto-sp13_S_contig8317.19673.1|Name=mRNA_Ecto-sp13_S_contig8317.19673.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=3988bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8317:20..4007+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATCGGTTCTGGATCCGCTGGGCAGAGAGGGGACTCGAGCATGCCGGGGTG
GTTGTGGGATACGGTATTCCAGTACCCGCTATCGGAAGGAGACACTAGAA
CCCAGTACTCGGACGGGTCGACGTTCGTGGGGCCTTTGAAGGATGGGATG
AGGCACGGGAAGGGTTGCTACTTCTTTCAGGACGGAAGCCGGTGCGTACT
ATGGGTAATTCAGGATTCGTGTGTATCTACCAAAAATATGAGCCGCCTTG
TTGAGCTGCGATTTCCAGAGCCATACCGAGGTAGCCAAAGAAGCGCATGT
CGTCAAATATGAACGCCTACTCCAACGCTTGCTTTGTTGTGCTCAAGTGT
CAGTGACTGCGTGATCTGACCTCTTGCCTGATCCATGCGCCCTTCCCCTT
GTCCTCGTTGCTCGTGATGGTCCCCGTCGGTTTTGATGGCTTTCCTTGTA
TCTTGGCTTGCTGTGTGCTTTAGGTACGAGGGATACTTCAAGGGAGACAA
ACGCCACGGAGAGGGAACACTCAACCTCGCCAGCGGGGGAAAGTGCGTGA
AATGGTTGTTTCTGACTTGACATGCTGATGGATACGCTCTTTGCTCGTTT
GTAAGCAGACAAACCAGATCGGGCCTAAGTGTGCCAACGCAGTGCACTAG
CATTGACCGCAGATGGTGTGTATTGCATCAACAAGCAACGTGCAGTAGTT
GCGCGGCCGGTCTGTGTTTCCTTTACCTTTTATGCACATCCCTGCATGCT
GATCTTGTGCGCTTTGATGAATTGAACGCAGATACGTGGGCGAATGGGAG
AATGACTTGCAGCACGGCGACGGGACATTCTACTTCGCCGATAGCTCTTG
CTTCAAGGGTCTGTGGATACAGGTGATGCCGACGACGGCGCATGGTGAAC
AGTGTCGTCATGACGTGTTGTGGTAGACTGCTTGCCGGATCGGTAGCATT
CGACCGCTGCGGCCATGTATTCGAAACTACAGACTGCAGTCGGTTGCAAC
CACGCGCAAGTCCTCAGGCAGACGCTTCTCGTGTTGACATCCGGTTACAT
AAGGCTGCCGCTGCTGTACATGGTGGAAGTTGTCCGCAGAACCGTGTTTT
CTAGCAGGGCCGTCGTGTGATTGCTATGATACACCATGTTGCCAAAGTGT
TGACTATTCGTCCCGACACCACTGGATGGTCTCAACTCGGCGCACCACCT
GAGACCTTTTGTTGTTCATGCCGCGCCATGTGGCCAATCCCTTTCATGTG
CTCCTCAGGGTAAGAAGAAGAGTGGCGTGTTCACCTACTCATCTGGCGGG
CGGTATATCGGGGAGTTGCAAGCAGGGCGCCGACACGGGCGAGGGTCTTT
CCTGTATCCTGACGGCTCGAGCTACGAGGGACAGTGGAAAGACAACTCGA
AACACGGCGAGTTAACCGGAGTTGGCGCGCTCCCCACTAGCGGGCTTTGC
TGGGGTGTCCGTGGGTTTATTCATGTCTTGTCGTGCTTTGTCGCTAATAT
ACTCCTTCATCCACGGTACCCCTCCATTGCCCGGAACACTCAAAACAACC
TTTGATCCTAAAGTACATGTTACGACGGTGGTTGTAGCGTGCAATACCTT
GATGTGCGGCTTAAATGAAAGCCGTTGTCCAGACTGCAGAGCAAGGACCC
AGGAGGCACGAGCCAGGGCTAGCACCGTTGTTGTAATTCCTTCTTCCGTC
ATCTGAACTGCCGTTTGATTGTCTCGTTCTTCTTTCCATTTGGTAGGGGA
GGGAACCGCGTGGTACGCCTCAGGCAATCGTTACGTGGGGCAGTGGCTTT
ACGGAAAGTCGCACGGGGAGGGCACGTACTATTACGCCACGGGGGCGAAA
TACGAAGGGCAGTTCGATGGTGGCAAGTGCCACGGCCGCGGAACCTACTT
CTACGCCAACGGCAACAAGTGAGCGGATAAGCACCAGACGGAATGTCTGT
GCCACGTTTTTTCTGCTTTCCATGCCGTGTGTACATCTCCTTCTCAACAC
CCTCCCCTCAATGCGCATCTGATGCTAGCTCTGCCGTGCTCCATCTCTTC
CCATTTTGTATGTCTTGAATTTGTTGGACCCTCTGTCCCACTGTCGTTGA
ACAGCGTTTTTCTTGTGTTGCTTCTCTTGTCTTGTCTCTGTTCTCTTATT
TTTGTTCACACCCTTCATACTTCATCATTGACTACGCAAAACGCGCACAC
GGCTTTCGTTTCATTCGTTTCATGTTTCTGTTCAGGTACGAAGGCGAGTG
GAAAGACGACATGAAGTGGGGGTTCGGGACAGCCGAGTACCTGAACAAGG
CTCACTATGAGGGACATTTCTTCATGGACAAAAGGCATGGCTTCGGGAAA
ATGCGGTACTCCAACGCAGGAACCTACGAGGTCAGTCAGCCAGTCAGCCA
GTCATTGTCTAGTGCGTATCGACTTCCCCAAGTCGATCGGAGGAATGTCG
TCACTTGTTTATTGTGCAGTTACGTGTTGGCCAAAACGACCTAAGAAAAC
CGACCACCACGGCCGTATCACGTCGCTATTCCTTTGTCTGGAAGTTTTGC
CACTGCAGAGGCAGCTTGTTCGCTGTTTTCGCAGGAGATGGATTATCTCT
GTCCAGCCCTGTTTGCAGTATAACAGCGTACCATGGCCGTCTCCGGTTCA
ATGGTGTTAACATTGCGCTGTGTTGTACCTCTTTGCTGCAACCCACGCCA
CTTCACTTTTCAGGGCGAATGGGCCTCGGGAAAGCCCCACGGGCAAGGTA
CCGCGACGCACAAGGACGGCGAGAAGTACATGGGAACCTACAAAGCCGGC
CTCTATCATGGGGAGGGTGAGTACTACCCTTCAGCACCACACCATGCCGT
ACTCGTGGTACAGCTTTGGCAGTGTGTCGAAATACGCTGTGCAACTTGTT
TTCGCTCTCGCTAAAATTTCTCATACGCCACGTCGGGCGGTTGTTTGCTA
GCTGAATCCACTCTGCTGCTGCTGCATGACATGCCATCGCGATCTACTTT
CTTCATCGCGAAAATATCTGCCTTCTTCGTTATGGCCCTCCGACCAGGGA
ACCCCGTAGAATGTTGTGTTGGCGTGTTTTCATCAGTCTATCGGCTAGCG
CAATCGATTTCAACTAAACGCACCTGTATACATGCACACCCAATTTTTCC
ATTCAAATGTGCTGAAGAACGTTTATGTGTTCGGCGTGCTCAAAGTCGAC
GTCTAGATCCTTGCAACATTTCAACGGCATTGTCTGGCGGCACTTTCTGA
GCGGCACAACCCCCTGATCAAGATGAGCGGTAGTACCTACTGTTAGCGTG
GGCGTGCCTCTGACTGACTGTGTTTGTTCTGCGATCACTTCTGGAAGCAG
GGTGCTACTGGTATTCCAACGGAGCGGTGTATGAAGGGCAATACCGCAAC
GGGCGCGTCCACGGTAAGGGCCGAGCGACATTCCCCTCAGGGGACAGCTA
CGCGGGGGAGTGGCGAGAGGGTGCCATGTCGGGTACCGGTGTGTACGAGT
TTAAGGAGGAGGGGGCGAGGTGAGCGGCCTTCTCTTGCATGCATACAGCC
AGGAATGACGGTGACGGCGAAGCGATTCTTCAAGATTTGCCGCATGTTTC
CTATTAAGCGTTTCGTGTGCCATGCTTCTTGTACTGCTTCGCCTGATCCT
GGGTGCCTGAGTTTCGTGTATGGCGACGGTGTGTGGTCCGGATTCCGGGA
CGAAACAGACGTTGGAGTGAATATCTCTTGACCTTGAGTACTTTCGCACA
TATATTCTGCTGACGTTTCTGTTTCAGCTACGAGGGAGACTTCGACAACG
GCAGAATGCACGGCGTGGGCGTCTACCGCTGGCCCCACGGAGATGTGTAC
CGAGGCTCTTGGCAGAACGACCGCAGGAGTGGACGAGGCCGCTACGAGTG
GACCGAGCTGGGGCTGACCTTCGAGGGTATGTTCCACGATGATCGCAGGA
CGGGCCGCGGAAGCATCATCTTCCCTGATGGTTCGAGG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8317:20..4007+

>mRNA_Ecto-sp13_S_contig8317.19673.1 ID=mRNA_Ecto-sp13_S_contig8317.19673.1|Name=mRNA_Ecto-sp13_S_contig8317.19673.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=531bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8317:20..4007+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGACTTGCAGCACGGCGACGGGACATTCTACTTCGCCGATAGCTCTTGC
TTCAAGGGTCTGTGGATACAGGGTAAGAAGAAGAGTGGCGTGTTCACCTA
CTCATCTGGCGGGCGGTATATCGGGGAGTTGCAAGCAGGGCGCCGACACG
GGCGAGGGTCTTTCCTGTATCCTGACGGCTCGAGCTACGAGGGACAGTGG
AAAGACAACTCGAAACACGGGGAGGGAACCGCGTGGTACGCCTCAGGCAA
TCGTTACGTGGGGCAGTGGCTTTACGGAAAGTCGCACGGGGAGGGCACGT
ACTATTACGCCACGGGGGCGAAATACGAAGGGCAGTTCGATGGTGGCAAG
TGCCACGGCCGCGGAACCTACTTCTACGCCAACGGCAACAACTACGAGGG
AGACTTCGACAACGGCAGAATGCACGGCGTGGGCGTCTACCGCTGGCCCC
ACGGAGATGTGTACCGAGGCTCTTGGCAGAACGACCGCAGGAGTGGACGA
GGCCGCTACGAGTGGACCGAGCTGGGGCTGA
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