mRNA_Ecto-sp13_S_contig83099.19660.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig83099.19660.1
Unique NamemRNA_Ecto-sp13_S_contig83099.19660.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig83099.19660.1 vs. uniprot
Match: D7G857_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G857_ECTSI)

HSP 1 Score: 110 bits (275), Expect = 2.550e-27
Identity = 53/54 (98.15%), Postives = 53/54 (98.15%), Query Frame = 1 
Query:    4 LCLLMIVRDEEFSLRENLPLWLDVADCFVIGVDDRTSDATNMVIQQVLGDKTAR 165
            LCLLMIVRDEEFSL ENLPLWLDVADCFVIGVDDRTSDATNMVIQQVLGDKTAR
Sbjct:   84 LCLLMIVRDEEFSLSENLPLWLDVADCFVIGVDDRTSDATNMVIQQVLGDKTAR 137
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig83099.19660.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G857_ECTSI2.550e-2798.15Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig83099contigEcto-sp13_S_contig83099:194..361 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop1
Start1
Seed ortholog score102.4
Seed ortholog evalue6.2e-20
Seed eggNOG ortholog2880.D7G857
Model size168
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
EggNOG OGs2F0SW@1,2T1WJ@2759
Cds size153
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464100.9258778-CDS-Ecto-sp13_S_contig83099:193..3461681464100.9258778-CDS-Ecto-sp13_S_contig83099:193..346Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig83099 194..346 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464100.9457228-UTR-Ecto-sp13_S_contig83099:346..3611681464100.9457228-UTR-Ecto-sp13_S_contig83099:346..361Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig83099 347..361 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig83099.19660.1prot_Ecto-sp13_S_contig83099.19660.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig83099 194..346 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig83099.19660.1

>prot_Ecto-sp13_S_contig83099.19660.1 ID=prot_Ecto-sp13_S_contig83099.19660.1|Name=mRNA_Ecto-sp13_S_contig83099.19660.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=51bp
MIVRDEEFSLRENLPLWLDVADCFVIGVDDRTSDATNMVIQQVLGDKTAR
*
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mRNA from alignment at Ecto-sp13_S_contig83099:194..361-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig83099.19660.1 ID=mRNA_Ecto-sp13_S_contig83099.19660.1|Name=mRNA_Ecto-sp13_S_contig83099.19660.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=168bp|location=Sequence derived from alignment at Ecto-sp13_S_contig83099:194..361- (Ectocarpus species13 EcNAP12_S_4_19m)
TTTTTGTGTCTTTTGATGATCGTCCGTGACGAGGAATTCAGCCTCAGGGA
GAACTTGCCTCTGTGGCTCGATGTTGCCGATTGCTTCGTCATCGGAGTGG
ATGATCGCACGAGCGACGCGACGAACATGGTTATTCAACAGGTCCTCGGT
GACAAGACAGCGAGGTAA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig83099:194..361-

>mRNA_Ecto-sp13_S_contig83099.19660.1 ID=mRNA_Ecto-sp13_S_contig83099.19660.1|Name=mRNA_Ecto-sp13_S_contig83099.19660.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=153bp|location=Sequence derived from alignment at Ecto-sp13_S_contig83099:194..361- (Ectocarpus species13 EcNAP12_S_4_19m)
ATGATCGTCCGTGACGAGGAATTCAGCCTCAGGGAGAACTTGCCTCTGTG
GCTCGATGTTGCCGATTGCTTCGTCATCGGAGTGGATGATCGCACGAGCG
ACGCGACGAACATGGTTATTCAACAGGTCCTCGGTGACAAGACAGCGAGG
TAA
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