mRNA_Ecto-sp13_S_contig82811.19627.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig82811.19627.1
Unique NamemRNA_Ecto-sp13_S_contig82811.19627.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig82811.19627.1 vs. uniprot
Match: D7G8Q5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G8Q5_ECTSI)

HSP 1 Score: 145 bits (365), Expect = 5.990e-43
Identity = 75/79 (94.94%), Postives = 77/79 (97.47%), Query Frame = 1
Query:    1 AHVLVFLIGVSCLPVPGRRMSLLTGIKTRLGLVGVGSNATSRGVARERLSIILAHQRGDVLLEGIDLKALQAEVYECVK 237
            AHVLVFLIG+SCL VPGRRMSLLTGIKTRLGLVGV +NATSRGVARERLSIILAHQRGDVLLEGIDLKALQAEVYECVK
Sbjct:   29 AHVLVFLIGLSCLSVPGRRMSLLTGIKTRLGLVGVSTNATSRGVARERLSIILAHQRGDVLLEGIDLKALQAEVYECVK 107          
BLAST of mRNA_Ecto-sp13_S_contig82811.19627.1 vs. uniprot
Match: A0A6H5L1E1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1E1_9PHAE)

HSP 1 Score: 112 bits (279), Expect = 1.820e-30
Identity = 57/60 (95.00%), Postives = 59/60 (98.33%), Query Frame = 1
Query:   58 MSLLTGIKTRLGLVGVGSNATSRGVARERLSIILAHQRGDVLLEGIDLKALQAEVYECVK 237
            MS+LTGIKTRLGLVGV +NATSRGVARERLSIILAHQRGDVLLEGIDLKALQAEVYECVK
Sbjct:    1 MSVLTGIKTRLGLVGVSTNATSRGVARERLSIILAHQRGDVLLEGIDLKALQAEVYECVK 60          
BLAST of mRNA_Ecto-sp13_S_contig82811.19627.1 vs. uniprot
Match: H3GMJ4_PHYRM (Uncharacterized protein n=18 Tax=Phytophthora TaxID=4783 RepID=H3GMJ4_PHYRM)

HSP 1 Score: 58.5 bits (140), Expect = 2.730e-9
Identity = 28/48 (58.33%), Postives = 36/48 (75.00%), Query Frame = 1
Query:   94 LVGVGSNATSRGVARERLSIILAHQRGDVLLEGIDLKALQAEVYECVK 237
            L G   +A+S+ VA+ERL IILAHQRG  +L G+DL ALQ E+ ECV+
Sbjct:   20 LFGEAEHASSKSVAKERLQIILAHQRGSQVLAGVDLAALQQELLECVQ 67          
BLAST of mRNA_Ecto-sp13_S_contig82811.19627.1 vs. uniprot
Match: A0A8K1CBG6_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CBG6_PYTOL)

HSP 1 Score: 57.4 bits (137), Expect = 1.000e-8
Identity = 26/43 (60.47%), Postives = 36/43 (83.72%), Query Frame = 1
Query:  109 SNATSRGVARERLSIILAHQRGDVLLEGIDLKALQAEVYECVK 237
            + A+S+ VA+ERL IILAHQRG  +L G+DL+ALQ+E+ ECV+
Sbjct:   31 TQASSKSVAKERLQIILAHQRGSQVLAGVDLQALQSELLECVQ 73          
BLAST of mRNA_Ecto-sp13_S_contig82811.19627.1 vs. uniprot
Match: A0A2D4BJA3_PYTIN (Cell division topological specificity factor MinE (Fragment) n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BJA3_PYTIN)

HSP 1 Score: 56.6 bits (135), Expect = 1.100e-8
Identity = 25/43 (58.14%), Postives = 37/43 (86.05%), Query Frame = 1
Query:  109 SNATSRGVARERLSIILAHQRGDVLLEGIDLKALQAEVYECVK 237
            ++++S+ VA+ERL IILAHQRG  +L G+DL+ALQ+E+ ECV+
Sbjct:   26 ASSSSKSVAKERLQIILAHQRGSQVLAGVDLQALQSELLECVQ 68          
BLAST of mRNA_Ecto-sp13_S_contig82811.19627.1 vs. uniprot
Match: A0A6G0WGC5_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces euteiches TaxID=100861 RepID=A0A6G0WGC5_9STRA)

HSP 1 Score: 56.6 bits (135), Expect = 1.480e-8
Identity = 30/60 (50.00%), Postives = 40/60 (66.67%), Query Frame = 1
Query:   64 LLTGIKTRLGLVGVGSNATS--RGVARERLSIILAHQRGDVLLEGIDLKALQAEVYECVK 237
            LL    T+ G+V   +NA S  + +A+ERL IILAHQRG   L G++L ALQAE+  CV+
Sbjct:    4 LLHNFLTKTGVVTAPTNAASASKNIAKERLQIILAHQRGSQALSGVNLNALQAELLACVQ 63          
BLAST of mRNA_Ecto-sp13_S_contig82811.19627.1 vs. uniprot
Match: A0A425CLZ3_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A425CLZ3_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 6.300e-8
Identity = 25/44 (56.82%), Postives = 34/44 (77.27%), Query Frame = 1
Query:  106 GSNATSRGVARERLSIILAHQRGDVLLEGIDLKALQAEVYECVK 237
            G +++S+ V +ERL IILAHQRG  +L G+DL ALQ E+ ECV+
Sbjct:   25 GHSSSSKSVVKERLQIILAHQRGSQVLTGVDLAALQQELLECVQ 68          
BLAST of mRNA_Ecto-sp13_S_contig82811.19627.1 vs. uniprot
Match: K3WAM2_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WAM2_GLOUD)

HSP 1 Score: 55.1 bits (131), Expect = 6.870e-8
Identity = 25/43 (58.14%), Postives = 34/43 (79.07%), Query Frame = 1
Query:  109 SNATSRGVARERLSIILAHQRGDVLLEGIDLKALQAEVYECVK 237
            +  +S+ VA+ERL IILAHQRG  +L G+DL+ALQ E+ ECV+
Sbjct:   32 AKTSSKSVAKERLQIILAHQRGSQVLAGVDLQALQKELLECVQ 74          
BLAST of mRNA_Ecto-sp13_S_contig82811.19627.1 vs. uniprot
Match: A0A662X0A3_9STRA (Uncharacterized protein n=1 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662X0A3_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 9.050e-8
Identity = 26/43 (60.47%), Postives = 33/43 (76.74%), Query Frame = 1
Query:  109 SNATSRGVARERLSIILAHQRGDVLLEGIDLKALQAEVYECVK 237
            S A+ + VA+ERL IILAHQRG  +L G+DL ALQ E+ ECV+
Sbjct:   29 SAASPKSVAKERLQIILAHQRGSQVLAGVDLAALQQELLECVQ 71          
BLAST of mRNA_Ecto-sp13_S_contig82811.19627.1 vs. uniprot
Match: A0A3F2RXG2_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RXG2_9STRA)

HSP 1 Score: 54.3 bits (129), Expect = 1.310e-7
Identity = 24/43 (55.81%), Postives = 35/43 (81.40%), Query Frame = 1
Query:  109 SNATSRGVARERLSIILAHQRGDVLLEGIDLKALQAEVYECVK 237
            ++++S+ VA+ERL IIL+HQRG  +L G+DL ALQ E+ ECV+
Sbjct:   29 TSSSSKSVAKERLQIILSHQRGSQILAGVDLAALQKELLECVQ 71          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig82811.19627.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G8Q5_ECTSI5.990e-4394.94Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L1E1_9PHAE1.820e-3095.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
H3GMJ4_PHYRM2.730e-958.33Uncharacterized protein n=18 Tax=Phytophthora TaxI... [more]
A0A8K1CBG6_PYTOL1.000e-860.47Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A2D4BJA3_PYTIN1.100e-858.14Cell division topological specificity factor MinE ... [more]
A0A6G0WGC5_9STRA1.480e-850.00Uncharacterized protein n=1 Tax=Aphanomyces euteic... [more]
A0A425CLZ3_9STRA6.300e-856.82Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
K3WAM2_GLOUD6.870e-858.14Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A662X0A3_9STRA9.050e-860.47Uncharacterized protein n=1 Tax=Nothophytophthora ... [more]
A0A3F2RXG2_9STRA1.310e-755.81Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig82811contigEcto-sp13_S_contig82811:33..269 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score145.2
Seed ortholog evalue1.3e-32
Seed eggNOG ortholog2880.D7G8Q5
Model size237
Hectar predicted targeting categorysignal peptide
Exons1
EggNOG free text desc.Septum formation topological specificity factor MinE
EggNOG OGs2CYKK@1,2S50K@2759
Cds size237
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464097.3744166-CDS-Ecto-sp13_S_contig82811:32..2691681464097.3744166-CDS-Ecto-sp13_S_contig82811:32..269Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig82811 33..269 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig82811.19627.1prot_Ecto-sp13_S_contig82811.19627.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig82811 33..269 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig82811.19627.1

>prot_Ecto-sp13_S_contig82811.19627.1 ID=prot_Ecto-sp13_S_contig82811.19627.1|Name=mRNA_Ecto-sp13_S_contig82811.19627.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=79bp
AHVLVFLIGVSCLPVPGRRMSLLTGIKTRLGLVGVGSNATSRGVARERLS
IILAHQRGDVLLEGIDLKALQAEVYECVK
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mRNA from alignment at Ecto-sp13_S_contig82811:33..269-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig82811.19627.1 ID=mRNA_Ecto-sp13_S_contig82811.19627.1|Name=mRNA_Ecto-sp13_S_contig82811.19627.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=237bp|location=Sequence derived from alignment at Ecto-sp13_S_contig82811:33..269- (Ectocarpus species13 EcNAP12_S_4_19m)
GCTCATGTGCTGGTGTTCTTGATTGGTGTGTCCTGCCTTCCCGTGCCGGG ACGAAGAATGAGTCTGCTGACTGGCATTAAGACAAGGCTTGGGCTCGTCG GGGTTGGTTCGAATGCCACATCACGTGGTGTCGCCCGTGAACGTTTGTCT ATTATCTTGGCACATCAGCGAGGAGACGTGTTGCTCGAGGGTATCGACCT CAAGGCATTACAGGCAGAGGTGTATGAGTGCGTGAAG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig82811:33..269-

>mRNA_Ecto-sp13_S_contig82811.19627.1 ID=mRNA_Ecto-sp13_S_contig82811.19627.1|Name=mRNA_Ecto-sp13_S_contig82811.19627.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=237bp|location=Sequence derived from alignment at Ecto-sp13_S_contig82811:33..269- (Ectocarpus species13 EcNAP12_S_4_19m)
GCTCATGTGCTGGTGTTCTTGATTGGTGTGTCCTGCCTTCCCGTGCCGGG
ACGAAGAATGAGTCTGCTGACTGGCATTAAGACAAGGCTTGGGCTCGTCG
GGGTTGGTTCGAATGCCACATCACGTGGTGTCGCCCGTGAACGTTTGTCT
ATTATCTTGGCACATCAGCGAGGAGACGTGTTGCTCGAGGGTATCGACCT
CAAGGCATTACAGGCAGAGGTGTATGAGTGCGTGAAG
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