mRNA_Ecto-sp13_S_contig8265.19612.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8265.19612.1
Unique NamemRNA_Ecto-sp13_S_contig8265.19612.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8265.19612.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8265contigEcto-sp13_S_contig8265:1088..6441 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop0
Start1
Model size3658
Hectar predicted targeting categoryother localisation
Exons5
Cds size2010
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8265.19612.1prot_Ecto-sp13_S_contig8265.19612.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8265 4432..6441 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464096.16473-UTR-Ecto-sp13_S_contig8265:1087..21531681464096.16473-UTR-Ecto-sp13_S_contig8265:1087..2153Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8265 1088..2153 +
1681464096.177153-UTR-Ecto-sp13_S_contig8265:2409..25881681464096.177153-UTR-Ecto-sp13_S_contig8265:2409..2588Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8265 2410..2588 +
1681464096.1909933-UTR-Ecto-sp13_S_contig8265:2976..30781681464096.1909933-UTR-Ecto-sp13_S_contig8265:2976..3078Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8265 2977..3078 +
1681464096.2026527-UTR-Ecto-sp13_S_contig8265:3543..36451681464096.2026527-UTR-Ecto-sp13_S_contig8265:3543..3645Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8265 3544..3645 +
1681464096.2160597-UTR-Ecto-sp13_S_contig8265:4233..44311681464096.2160597-UTR-Ecto-sp13_S_contig8265:4233..4431Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8265 4234..4431 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464096.2277284-CDS-Ecto-sp13_S_contig8265:4431..64411681464096.2277284-CDS-Ecto-sp13_S_contig8265:4431..6441Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8265 4432..6441 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8265.19612.1

>prot_Ecto-sp13_S_contig8265.19612.1 ID=prot_Ecto-sp13_S_contig8265.19612.1|Name=mRNA_Ecto-sp13_S_contig8265.19612.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=670bp
MKASGFLDRFVDCPQAMDALAGVFKSRRAQKPPSTGHTQESSGALFSTAV
ADVDALAVEYLEATTGDIKGGVALTSASTAWPADGAPVYVMFGLCNKGEH
SISQLAKAAPKNHTAAAMLAFFDVWQSGRTEGAAACAPFAFNFNPFSCMQ
TYQGAFGGSTLTRKPRCDVERLGLGAALLRLLCLAALAECNVSVAGALSV
TSKSLPHDVFALGELRARLGPAAFKAFNGGLELADTASGIVSSSCHPSVM
QTTTSRHRPWVAVNVTEACSNLLGLEPAGTPTPKLQDAVGMFCRRLQHHS
GGEFTLSVPATPTALPAPDPGAEAAAVQSARDQIEERAGATGLLAWPTKE
QSDLAAHAGKSTHDSLMARVKPHLPPGAIASGCAVGATGGGQVVAGTWLN
KNTVDGGLLEGNTVWAMNTVLAALARGEGAAGFDSASAVINKTRDAGSFA
MCLDRLGINDRAGVEITGSRSPSGGGTTIGSMDPDLRADLGLGEGEDAPL
LRSVSHGVARETVKAMVSRGGAKVVRSHGQHGAVEGEHAAWLGADSYQDV
ADVVGEYAERTLCGRFGIGAVGGVSVGVASWNGVGKTVVVTQMLHASYPL
AVVHSGDAGGTSGVSASLHFAGANTAVVLAIASLLGTRLPNSLQESCAGW
LLLGDGGVVGRAISIMGSIG
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mRNA from alignment at Ecto-sp13_S_contig8265:1088..6441+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8265.19612.1 ID=mRNA_Ecto-sp13_S_contig8265.19612.1|Name=mRNA_Ecto-sp13_S_contig8265.19612.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5354bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8265:1088..6441+ (Ectocarpus species13 EcNAP12_S_4_19m)
CACGAATTTTCGCGCTCCTGGCCATTCTGCTTTCCGCACCGATCATAGAG
GATCTGCCTGTCGGTTATCGCCGGAGACCGAACCAGAAAGGAGGCCAGCG
CACTACCTAGCGTGCTGGTTCGTTGCGCGATGACGGCTTGCTTCTCCGCC
TGTGTTCGTCATGGCCATCAGCTCCTTCGCCACCTGCAAAAGACCAGCCG
ACGCCTCGGGACGTCTTGCTAGCCCAGGAGCCAGACCCCGATGCCTCAGC
CCTCGCGCCCCGGCATCACATGGGATCCGATCTGGCTCGCGAGGAGGCTA
AGGCAACGACGGAACCCGGGTGTCATGAAGGCACGCGGTTCTCTTTCAGG
CCGATGGAGACCCGGTATTTTTGTATCAAATTGGTTTGTGTGTTTGCTGA
AAGAGAGACGTTTGTTTTTTAGAATGTAAACGTTTTTTGTCTTCGTTTCG
GCTTCACTCAAATCTCTCCGCCGGTATCCCCCTGGGTGCTTCCTCGACGA
GGGCCGCCCCGGCACCACGCGCAGCCCTCGGGCATTCAATTAACCGCTGC
GGTCCTCCGTCGATATGGGGAAACACACAGCGGGATACTGGTGCGTGCGC
GAGGGATTTGGGTGGGGTGCGGTCGCTCTGTTGGTAGTGTCGAGCTCTCG
TGCGCCCAAAGGTAGACTAGACTACGTAGACTCGTCTCCGCGCTGCTCCA
AGAGTCGTCCATCGCACATGCTGCAGTCTCGCGCCACATGCTCCCCTCCT
TTGTCACTGGTCCCGCAGGCTTCGGCCTATATCAAGCCAAGATCATTGGT
AGGGGGTAGGCTGAGAGAGAGTGGCGTGGCGTTTGGGTGGCCTTGTGGCG
GTGTGGGTGAGGGGGGAGCTCGGCGCTGTAGGAACATGAAATTTAGGAAA
CACACGAACACCGCATTATTGTCGCATGCTTATTCGGTGCCCTTGTTTCT
CGGTGTGTCGTTCTGTGTGCCCCTCTCCCGTCCGCGTGCAGTACGTGCAT
CTCCTGTGGGGTGGAGTGCTCGGTGAGAGAGTATGAGTGGAGCGCCGGCA
ACTTCATCAACCCCGGGTGAGAATCTCTGCTAACGTCTGCATGACTGCTG
TCGAAGGGAATAGAACGTTTGTCTGATTGGAACACACGTTGTTGGTGCAT
TCACAGCGCGGACACACACAAGAAACTGCCCGTCTAGCTGTATCTATGCT
GTGAGCGCAGCGGGTTCGTGTTTGAGCTGCTGGGTAAAAATATGGGGTCT
GAAGACAGGGGGCGGTAGGTGGGCGCTGTTGTGAACATGTGTTCTTGCGA
CTTGCTTCTGCTTTTTGGTCAGGTGCCGTTCTTGCGCGCTTGGCGCCCAA
CACCCCCCCAAGGGGCGAGGGCAGGGGCAAGGGCAAGGGCCGGCGGGCAA
CGGTCGCGTCATCGTCGACGCCGCTCGAGGCTGCGCACGAAGTCGACGGC
GAAGGACGCCCTGTCTCCGGCAGCCACAACGTCGGCTCGGGGCTCGAGGA
GGTGGGTCCCGAACAGGGTGTGGCGGGGGGGCGGGGGGCGTGGCTTGTGC
AGGTACCGAGCGAGCATTGTATTGCAGAGTAATTCGATTCAAGTATCCGT
GTACACACTAGTCGGACCGTTTGCTGCTTTCTGGCTCGTCCTCGGGATAC
ATCTCGACATTGCACAAGTATGATCCAAGCGAGAGGATGGGGCCCCAACC
GAGGTGTGATCGCGTACAGTGCTCAACGAGTAGTTCCCGTTGCGGTTCAC
GAAGCGAGGGCCGTTGTTCGTCGTTTGTACGTATGCATTCATCGAGCAGA
CCAAGGTTTTTTGTAACTTTTCCCCCGCCAAACACCTCAACCCCAGCCTG
ATACTCCGACCGTTTCACTCCTCGTCTCGTGCTGTACAGTTCGAATTCCA
GCAGGCTATCCAGGCGAGTCGCGCCGATCAAGATGGCCCCGCAGGCGGTT
CGTCGAGCGCCGGCTGCACCCCCGGCAGCAGCTACCCAAAGGTGAGGCAG
GGCGGCTTCCATTTGTACATGCAACCCTAGCCCCCCGTAGAAATAGTAGC
TCCGTAAGGATAGCTCACCAGCCGAGGGTACCCGCGGCCTAAACGACGAG
AGTAGAGCGGGCGCGGTCTGTCTTTCTCAGGTTGCGTCGGGCGAGAAACG
ACAACAATAATATTGTATGTCGGCGCTTGGCTGTCGAGCGGAACGTTCGG
ATAAAAAGCCAGATGGTACCCTTCGGGCGGTGCAGCGTTTGTCCCTATCG
GCAACTCTCGGGTATCACCTTCACTGCTTGTGGTTAGTCAGTATCGTGCT
CCCGCCGTCCTTGCTTCATGCGTGCGAATTCGCCGTGGGTTCGCGCCAAA
ACAGTGTCGGCCCCGGCTCTGTATCTAACGCAGACATTTCATCCGCCACA
CCAACCCCGACACCCTCCGCTCGTTTTAAACGGCCGCCGATATGACACAC
CTCCAGGGAACCAACAGCGAGTGTTAGGACAGCGACAACGTCTTCGAGCT
GACCGATAGCGACGAGGGGTGGACGCCCTCCAATAAGAAGCCCAAACGAC
GGGTCGAGGTTAGTTCTCCTTCGCCGGCATAGGAGGCCCTTTGATGTTCT
CCTGCGGTTGAGCTGATGTTGTCGAAGTTAGTGTTGTTTGTTCGTCTTTA
CCTCGGCGTCTCGGTGCTTGCAGGGGGCACTCGCACGGGGCTCGGTTTCA
CGCGTGTCGTATTCGCATAGACCCACAGACCTGCGAAGGCGGGGCGGAGC
ATGCCGTTTCCCTTTTTTCGAGGGACCAGGCCCGCATTCGCCAGGCAGTG
CATCGGGCTTTTGGGTGGGGCGCTCTGCACTGGGCCTTCCCTGTTGTTTT
TGTCGACCGTTCGTTACCTACATCAGCTCATGTTTTCGGGCATTAGACTG
CCAGTTACCGGCGGCCGTCGACATGATGCACTGCACGCATGCGTAAGGGC
GCAAACGACACGTCGCGCGTCCGTGTTGTCGTGCCGAAACGACTGTGAAA
TATGGGTGCAGCACCTGATGATGGAGATGTTCTTCCGGGGGGCGACGACG
GGTTGAACGAAAGCAACATTGCGCATTATCGCACAATAACAAGTACCCCG
CGCTCGCCCCCTTCCGCAAATTCTTGTGCCGTTGACCGCTGACTAGCACT
CGTACAAGAAGCGCGGGACTGCTACGGCGGCGGCCCCTTCCAAGCGACAG
CGCGTCCGTGGCGGCAACAGCGGCAAGCAGCCGAAGACCAGCAGCAGCAG
CAGCAGCGGTGGCAACGGCGTTGGTACACCCGGCGTGCAACCGGTGGCGG
ACCTCGACCGCTACGACATCAACCGCCCTGGCGGTCACGACGGTATGAAG
GCGTCGGGGTTCCTCGACCGCTTCGTGGATTGTCCCCAGGCGATGGATGC
TCTCGCGGGCGTTTTCAAGTCTCGGCGCGCACAGAAGCCCCCTTCGACGG
GGCACACGCAAGAGTCGAGCGGGGCGCTCTTCTCGACGGCGGTGGCCGAC
GTGGACGCGCTGGCGGTCGAGTATCTGGAGGCAACGACCGGCGACATCAA
GGGCGGCGTTGCTCTTACTTCCGCCTCAACGGCGTGGCCGGCTGACGGCG
CCCCAGTCTACGTCATGTTCGGCCTTTGCAACAAGGGAGAACACAGCATC
AGCCAGCTGGCGAAAGCGGCACCGAAGAACCACACGGCGGCTGCCATGTT
GGCGTTCTTCGACGTGTGGCAGTCCGGGCGGACCGAGGGAGCTGCGGCAT
GTGCTCCTTTCGCCTTCAATTTTAACCCGTTCTCCTGTATGCAGACCTAC
CAGGGGGCCTTCGGCGGCAGCACCCTCACCCGCAAGCCGCGCTGTGACGT
CGAAAGGCTCGGGCTTGGTGCTGCACTACTGCGACTCCTCTGCTTGGCTG
CTTTGGCGGAGTGCAACGTTTCCGTGGCCGGCGCCTTGAGCGTGACGTCG
AAGTCACTCCCCCATGACGTGTTTGCGTTGGGGGAGCTTCGGGCTAGGCT
GGGACCAGCGGCCTTCAAAGCATTCAACGGTGGTTTGGAGCTTGCGGACA
CCGCCTCCGGGATCGTCTCTTCTTCCTGCCACCCTTCCGTCATGCAGACG
ACCACCAGCCGGCACCGCCCCTGGGTGGCGGTGAACGTGACGGAGGCGTG
CTCGAACCTCCTGGGGCTAGAACCTGCCGGCACCCCGACCCCGAAACTCC
AGGACGCCGTTGGCATGTTCTGCCGACGACTGCAACACCATTCGGGTGGG
GAATTTACTCTCAGCGTGCCAGCCACCCCGACGGCTCTGCCAGCCCCGGA
CCCGGGTGCTGAGGCAGCAGCGGTCCAGTCTGCGCGGGACCAAATCGAGG
AGAGGGCCGGTGCGACGGGGCTGCTTGCGTGGCCCACGAAGGAGCAGTCC
GACTTGGCCGCGCACGCCGGCAAGTCGACCCACGACTCCCTAATGGCGAG
AGTGAAACCTCATCTGCCCCCGGGTGCCATCGCCAGCGGCTGCGCCGTCG
GAGCAACCGGTGGCGGCCAGGTTGTGGCCGGAACGTGGCTCAACAAAAAT
ACTGTCGACGGTGGTCTGCTTGAGGGCAACACGGTGTGGGCAATGAACAC
CGTCTTGGCGGCGCTGGCGCGTGGAGAGGGCGCCGCTGGTTTCGACTCGG
CATCGGCCGTGATCAACAAGACCCGTGATGCGGGATCCTTTGCGATGTGT
CTCGACCGCCTCGGCATCAACGACCGCGCCGGAGTAGAGATTACGGGCAG
CAGGTCGCCCTCGGGGGGCGGAACGACGATCGGTAGCATGGACCCCGACC
TGCGCGCCGACCTGGGCCTAGGGGAGGGGGAGGATGCGCCTCTGCTGCGT
TCGGTTTCCCACGGTGTTGCGAGGGAGACCGTCAAGGCGATGGTGAGCCG
CGGGGGGGCGAAGGTGGTGCGGTCCCATGGACAGCATGGCGCCGTGGAGG
GAGAACACGCTGCCTGGCTCGGGGCGGACTCGTACCAGGACGTCGCCGAC
GTGGTCGGCGAGTACGCCGAGCGGACCCTATGCGGGCGATTTGGAATCGG
GGCGGTCGGCGGCGTCTCTGTCGGGGTTGCGTCATGGAACGGAGTCGGCA
AAACCGTCGTCGTGACCCAGATGCTGCACGCCAGCTACCCTCTTGCGGTG
GTCCACAGCGGCGATGCTGGTGGAACATCGGGGGTCAGCGCGTCTCTTCA
CTTCGCGGGCGCCAACACCGCGGTCGTTCTCGCGATTGCGTCCCTCCTCG
GAACGCGCCTCCCGAACTCGCTCCAGGAATCCTGTGCCGGTTGGCTCCTG
CTTGGAGATGGCGGGGTGGTGGGTCGAGCCATTAGTATCATGGGCAGCAT
AGGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8265:1088..6441+

>mRNA_Ecto-sp13_S_contig8265.19612.1 ID=mRNA_Ecto-sp13_S_contig8265.19612.1|Name=mRNA_Ecto-sp13_S_contig8265.19612.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=2010bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8265:1088..6441+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGAAGGCGTCGGGGTTCCTCGACCGCTTCGTGGATTGTCCCCAGGCGAT
GGATGCTCTCGCGGGCGTTTTCAAGTCTCGGCGCGCACAGAAGCCCCCTT
CGACGGGGCACACGCAAGAGTCGAGCGGGGCGCTCTTCTCGACGGCGGTG
GCCGACGTGGACGCGCTGGCGGTCGAGTATCTGGAGGCAACGACCGGCGA
CATCAAGGGCGGCGTTGCTCTTACTTCCGCCTCAACGGCGTGGCCGGCTG
ACGGCGCCCCAGTCTACGTCATGTTCGGCCTTTGCAACAAGGGAGAACAC
AGCATCAGCCAGCTGGCGAAAGCGGCACCGAAGAACCACACGGCGGCTGC
CATGTTGGCGTTCTTCGACGTGTGGCAGTCCGGGCGGACCGAGGGAGCTG
CGGCATGTGCTCCTTTCGCCTTCAATTTTAACCCGTTCTCCTGTATGCAG
ACCTACCAGGGGGCCTTCGGCGGCAGCACCCTCACCCGCAAGCCGCGCTG
TGACGTCGAAAGGCTCGGGCTTGGTGCTGCACTACTGCGACTCCTCTGCT
TGGCTGCTTTGGCGGAGTGCAACGTTTCCGTGGCCGGCGCCTTGAGCGTG
ACGTCGAAGTCACTCCCCCATGACGTGTTTGCGTTGGGGGAGCTTCGGGC
TAGGCTGGGACCAGCGGCCTTCAAAGCATTCAACGGTGGTTTGGAGCTTG
CGGACACCGCCTCCGGGATCGTCTCTTCTTCCTGCCACCCTTCCGTCATG
CAGACGACCACCAGCCGGCACCGCCCCTGGGTGGCGGTGAACGTGACGGA
GGCGTGCTCGAACCTCCTGGGGCTAGAACCTGCCGGCACCCCGACCCCGA
AACTCCAGGACGCCGTTGGCATGTTCTGCCGACGACTGCAACACCATTCG
GGTGGGGAATTTACTCTCAGCGTGCCAGCCACCCCGACGGCTCTGCCAGC
CCCGGACCCGGGTGCTGAGGCAGCAGCGGTCCAGTCTGCGCGGGACCAAA
TCGAGGAGAGGGCCGGTGCGACGGGGCTGCTTGCGTGGCCCACGAAGGAG
CAGTCCGACTTGGCCGCGCACGCCGGCAAGTCGACCCACGACTCCCTAAT
GGCGAGAGTGAAACCTCATCTGCCCCCGGGTGCCATCGCCAGCGGCTGCG
CCGTCGGAGCAACCGGTGGCGGCCAGGTTGTGGCCGGAACGTGGCTCAAC
AAAAATACTGTCGACGGTGGTCTGCTTGAGGGCAACACGGTGTGGGCAAT
GAACACCGTCTTGGCGGCGCTGGCGCGTGGAGAGGGCGCCGCTGGTTTCG
ACTCGGCATCGGCCGTGATCAACAAGACCCGTGATGCGGGATCCTTTGCG
ATGTGTCTCGACCGCCTCGGCATCAACGACCGCGCCGGAGTAGAGATTAC
GGGCAGCAGGTCGCCCTCGGGGGGCGGAACGACGATCGGTAGCATGGACC
CCGACCTGCGCGCCGACCTGGGCCTAGGGGAGGGGGAGGATGCGCCTCTG
CTGCGTTCGGTTTCCCACGGTGTTGCGAGGGAGACCGTCAAGGCGATGGT
GAGCCGCGGGGGGGCGAAGGTGGTGCGGTCCCATGGACAGCATGGCGCCG
TGGAGGGAGAACACGCTGCCTGGCTCGGGGCGGACTCGTACCAGGACGTC
GCCGACGTGGTCGGCGAGTACGCCGAGCGGACCCTATGCGGGCGATTTGG
AATCGGGGCGGTCGGCGGCGTCTCTGTCGGGGTTGCGTCATGGAACGGAG
TCGGCAAAACCGTCGTCGTGACCCAGATGCTGCACGCCAGCTACCCTCTT
GCGGTGGTCCACAGCGGCGATGCTGGTGGAACATCGGGGGTCAGCGCGTC
TCTTCACTTCGCGGGCGCCAACACCGCGGTCGTTCTCGCGATTGCGTCCC
TCCTCGGAACGCGCCTCCCGAACTCGCTCCAGGAATCCTGTGCCGGTTGG
CTCCTGCTTGGAGATGGCGGGGTGGTGGGTCGAGCCATTAGTATCATGGG
CAGCATAGGA
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