mRNA_Ecto-sp13_S_contig8262.19610.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8262.19610.1
Unique NamemRNA_Ecto-sp13_S_contig8262.19610.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8262.19610.1 vs. uniprot
Match: D7FZR8_ECTSI (Lipase_3 domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZR8_ECTSI)

HSP 1 Score: 660 bits (1703), Expect = 1.490e-234
Identity = 366/462 (79.22%), Postives = 378/462 (81.82%), Query Frame = 1 
Query:    1 MHRRCRTAVYVGLFSIAAFLRAVLGGQHFEYDEDLGKLAVIYSSAAYDRVEEWVFANSACXXXXXXXXXXXXXXXXXXXXXXFVGVDTVGERIVVAFKGTTDLQDWVTNLRTWIHYNHRCAPAGGTDAGAATTTYAGGEAVAPGQQTAGEVSQSRSHQQHRRRPGDQQADLRGQD-AKACGGGEDCVDGGPAESGAAPRFLGREPFSGA-GIVGGKDXXXXXXXXXXXXXXXXXXXXXXXXSSYGVGGRDPAAAAGYGSSSNKEVAAREHGDAPGGEGSGAGDDGEDDRLLIGNVHFGFCEFYQTLVAKGLAAKVLHLARKHPTYTIFVTGHSLGGAAAAVCAADLVERLGVASERVVLYTLGEPRAGDGIFADGINEHVGTAYRIVHDKDLVPHLSLCCHGWFGKCIGGEEACPYQHSTEIVYANDMSDGSPWIQCDDMVGEDYACDPQQGWDLSIADHVS 1380
            MHRRCRTAVY+GLFSIAA LRAVLGGQHFEYDEDLGKLAVIYSSAAYDRVEEWVFAN AC                      FVGVDTVGERIVVAFKGTTD+QDWVTNLRTWIHY HRCAPAGG D  AATT + GGEA APG++ A E+SQSRS QQHRRRPG Q ADLRGQ+ AKA GGGE  VDG  AES                G+VG +DXXXXXXXXXXXXXX             GVGGRDP AA GY SSS  E A RE GDAPGGEG GAGDDGEDD+LLIGNVHFGFCEFYQTLVA+GLAAKVLHLARKHPTYTIFVTGHSLGGAAAAVCAADLVERLGVASERVVLYTLGEPRAGDGIFADGINEHVGTAYRIVHDKDLVPHLSLCCHGW GKCIGGEEACPYQHSTEIVYANDMSDGSPWIQC+D VGEDYACDPQ GWDLSIADHVS
Sbjct:    1 MHRRCRTAVYLGLFSIAASLRAVLGGQHFEYDEDLGKLAVIYSSAAYDRVEEWVFANPACNEQTKGFVFVESFVGEHTDAFSFVGVDTVGERIVVAFKGTTDVQDWVTNLRTWIHYTHRCAPAGGPDTVAATTPHPGGEAAAPGRRAAAEMSQSRSRQQHRRRPGGQPADLRGQEEAKASGGGEGRVDGRQAESXXXXXXXXXXXXXXXXGVVGREDXXXXXXXXXXXXXX-------------GVGGRDPTAA-GYASSSAMEAAPRERGDAPGGEGPGAGDDGEDDQLLIGNVHFGFCEFYQTLVAEGLAAKVLHLARKHPTYTIFVTGHSLGGAAAAVCAADLVERLGVASERVVLYTLGEPRAGDGIFADGINEHVGTAYRIVHDKDLVPHLSLCCHGWLGKCIGGEEACPYQHSTEIVYANDMSDGSPWIQCNDTVGEDYACDPQ-GWDLSIADHVS 447
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BLAST of mRNA_Ecto-sp13_S_contig8262.19610.1 vs. uniprot
Match: A0A6H5KHF8_9PHAE (Lipase_3 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KHF8_9PHAE)

HSP 1 Score: 652 bits (1681), Expect = 1.290e-231
Identity = 368/460 (80.00%), Postives = 375/460 (81.52%), Query Frame = 1 
Query:    1 MHRRCRTAVYVGLFSIAAFLRAVLGGQHFEYDEDLGKLAVIYSSAAYDRVEEWVFANSACXXXXXXXXXXXXXXXXXXXXXXFVGVDTVGERIVVAFKGTTDLQDWVTNLRTWIHYNHRCAPAGGTDAGAATTTYAGGEAVAPGQQTAGEVSQSRSHQQHRRRPGDQQADLRGQDAKACGGGEDCVDGGPAESGAAPRFLGREPFSGAGIVGGKDXXXXXXXXXXXXXXXXXXXXXXXXSSYGVGGRDPAAAAGYGSSSNKEVAAREHGDAPGGEGSGAGDDGEDDRLLIGNVHFGFCEFYQTLVAKGLAAKVLHLARKHPTYTIFVTGHSLGGAAAAVCAADLVERLGVASERVVLYTLGEPRAGDGIFADGINEHVGTAYRIVHDKDLVPHLSLCCHGWFGKCIGGEEACPYQHSTEIVYANDMSDGSPWIQCDDMVGEDYACDPQQGWDLSIADHVS 1380
            MHRRCRTAVY+GLFSIAA LRAVLGGQHFEYDE LGKLAVIYSSAAYDRVEEWVFAN AC                      FVGVDTVGERIVVAFKGTTD+QDWVTNLRTWIHYNHRCAPAG  D  AA TTY GGEAVAPGQQTA EVSQS SHQQHRRRPG QQAD R Q+AKA GG E  VDGGPAESGAAPR  GREP SGAGIVGG+ XXXXXXXXXXXXXXXXXXXXXXXX                        A+REH              GEDDRLLIGNVHFGFCEFYQTLVA+GLA KVLHLARKHPTYTIFVTGHSLGGAAAAVCAADLVERLGVASERVVLYTLGEPRAGDG+FADGINEHVGTAYRIVHDKDLVPHLSLCCHGW GKCIGGEEACPYQHSTEIVYANDMSDGSPWIQCDDMVGEDYACDPQ GWDLSIADHVS
Sbjct:    1 MHRRCRTAVYLGLFSIAASLRAVLGGQHFEYDEGLGKLAVIYSSAAYDRVEEWVFANPACNEQTKGFVFIESFVGEHTDAFGFVGVDTVGERIVVAFKGTTDVQDWVTNLRTWIHYNHRCAPAGEADTVAAPTTYPGGEAVAPGQQTAAEVSQSCSHQQHRRRPGGQQADSRAQEAKASGGREGWVDGGPAESGAAPRLGGREPLSGAGIVGGEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX------XXXAASREH--------------GEDDRLLIGNVHFGFCEFYQTLVAEGLATKVLHLARKHPTYTIFVTGHSLGGAAAAVCAADLVERLGVASERVVLYTLGEPRAGDGVFADGINEHVGTAYRIVHDKDLVPHLSLCCHGWLGKCIGGEEACPYQHSTEIVYANDMSDGSPWIQCDDMVGEDYACDPQ-GWDLSIADHVS 439
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BLAST of mRNA_Ecto-sp13_S_contig8262.19610.1 vs. uniprot
Match: A0A835YPJ5_9STRA (Alpha/Beta hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YPJ5_9STRA)

HSP 1 Score: 151 bits (381), Expect = 4.820e-38
Identity = 85/170 (50.00%), Postives = 104/170 (61.18%), Query Frame = 1 
Query:  868 IGNVHFGFCEFYQTLVAKGLAAKVLHLARKHPTYTIFVTGHSLGGAAAAVCAADLVERLGVASERVVLYTLGEPRAGDGIFADGINEHVGTAYRIVHDKDLVPHLSLCC-HGWFGKCIGGEEACPYQHSTEIVYANDMSDGSPWIQCDDMVGEDYACDPQQGWDLSIADH 1374
            IG VH GFCE+Y +L   GL  +++ LA  HP+YTI+ TGHSLGGAAA + AADL  R GV  ER+ LYT G PR GD  F   I  HVG AYR+VH  D+V HL+ CC   W G C    E CPY  + E+ Y + M+ GS  I C+  V ED  CD    +D SI +H
Sbjct:  136 IGLVHRGFCEYYTSLSDLGLPEEIVALADMHPSYTIYTTGHSLGGAAATLAAADLSLRFGVPRERLQLYTFGAPRPGDASFGALIGAHVGAAYRVVHAGDVVAHLAPCCLASWTGGCAT-LETCPYHAAQEVWYPSAMAVGSNHIVCE-PVAEDDDCDNL--FDRSIKEH 301
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BLAST of mRNA_Ecto-sp13_S_contig8262.19610.1 vs. uniprot
Match: A0A7S2HQX8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2HQX8_9STRA)

HSP 1 Score: 137 bits (346), Expect = 9.490e-34
Identity = 72/171 (42.11%), Postives = 101/171 (59.06%), Query Frame = 1 
Query:  868 IGNVHFGFCEFYQTLVAKGLAAKVLHLARKHPTYTIFVTGHSLGGAAAAVCAADLVERLGVASERVVLYTLGEPRAGDGIFADGINEHVGTAYRIVHDKDLVPHLSLCCHGWFGKCIGGEEACPYQHSTEIVYANDMSDGSPWIQCDDMVGEDYACDPQQGWDLSIADHVS 1380
            +GNVH GFC +Y +L +KG+A +   L   +PTY   VTGHSLG AAAAV A DL  R  ++     LYT G+PR G   F++ I +    AYR+VH KD++ HL  CC   + KC  G+  CPY    E+ Y N+M D S +++C+   GED +C       L++ DH++
Sbjct:  105 LGNVHDGFCSYYNSLQSKGMADRFAELVALYPTYLPIVTGHSLGAAAAAVMAVDLNARYEISP---YLYTFGQPRVGGYSFSESIGDATAKAYRVVHKKDMIAHLPPCCAVAY-KCYKGD-TCPYHTGHEVWYDNNMKDSSDYVECNQ--GEDTSCSDSLMVALNVDDHLN 268
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BLAST of mRNA_Ecto-sp13_S_contig8262.19610.1 vs. uniprot
Match: W7U7Q2_9STRA (Lipase class 3 n=3 Tax=Monodopsidaceae TaxID=425072 RepID=W7U7Q2_9STRA)

HSP 1 Score: 139 bits (351), Expect = 3.440e-33
Identity = 78/170 (45.88%), Postives = 98/170 (57.65%), Query Frame = 1 
Query:  868 IGNVHFGFCEFYQTLVAKGLAAKVLHLA-RKHPTYTIFVTGHSLGGAAAAVCAADLVERLGVASERVVLYTLGEPRAGDGIFADGINEHVGTAYRIVHDKDLVPHLSLCCHGWFGKCIGGEEACPYQHSTEIVYANDMSDGSPWIQCDDMVGEDYACDPQQGWDLSIADH 1374
            +G+ H GFC FY +LV  GLA +V  LA R    YT+ VTGHSLGG  A++CA DL +RL V+S   +LYT GEPRAGD  FA  + E+   +YR+VH  D VPHL  CC G  G        CP+ H  EI Y +DMS G+ ++ C     ED       G   S+ DH
Sbjct:  199 LGHTHHGFCAFYTSLVTLGLAEEVAALAARMGEEYTVLVTGHSLGGGVASLCAVDLGKRLNVSS---LLYTFGEPRAGDVGFATAVAEYTRGSYRLVHASDCVPHLPPCCGGVDGGHCAEVADCPFHHGQEIWYDDDMSVGAQYVACPGDEDEDVC---SNGSISSVEDH 362
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BLAST of mRNA_Ecto-sp13_S_contig8262.19610.1 vs. uniprot
Match: A0A7S4EY64_CHRCT (Hypothetical protein n=1 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4EY64_CHRCT)

HSP 1 Score: 122 bits (307), Expect = 7.340e-28
Identity = 76/170 (44.71%), Postives = 93/170 (54.71%), Query Frame = 1 
Query:  871 GNVHFGFCEFYQTLVAKGLAAKVLHLARKHPTYTIFVTGHSLGGAAAAVCAADLVERLGVASERVVLYTLGEPRAGDGIFADGINEHVGTAYRIVHDKDLVPHLSLCCHGWFGKCIGGEEACPYQHSTEIVYANDMSDGSPWIQCDDMVGEDYACDPQQGWDLSIADHVS 1380
            G VH GFCE+Y  L   G+A     L  KH  YT  +TGHSLGGAAAA+ A D+ E         +LYT G PR GD  FA  +N  V  AYRIVH +D+VPHL  C  G  G C  G+ A P+  +TE+ Y N M  G  +  CD   GED  C       +S++DH S
Sbjct:  123 GTVHKGFCEYYVKLAKLGVAGNFTALMEKHSDYTPVMTGHSLGGAAAALMAYDVYE-YSRGRAAALLYTYGMPRVGDFEFAKALNARVANAYRIVHARDIVPHLPPCV-GLLG-CSQGK-AMPHHTATEVFYPNAMRSGDNFTICDGS-GEDSHCSNGVAH-ISVSDHCS 286
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BLAST of mRNA_Ecto-sp13_S_contig8262.19610.1 vs. uniprot
Match: A0A7S4BC24_CHRCT (Hypothetical protein n=2 Tax=Chrysotila carterae TaxID=13221 RepID=A0A7S4BC24_CHRCT)

HSP 1 Score: 122 bits (307), Expect = 2.530e-27
Identity = 76/170 (44.71%), Postives = 93/170 (54.71%), Query Frame = 1 
Query:  871 GNVHFGFCEFYQTLVAKGLAAKVLHLARKHPTYTIFVTGHSLGGAAAAVCAADLVERLGVASERVVLYTLGEPRAGDGIFADGINEHVGTAYRIVHDKDLVPHLSLCCHGWFGKCIGGEEACPYQHSTEIVYANDMSDGSPWIQCDDMVGEDYACDPQQGWDLSIADHVS 1380
            G VH GFCE+Y  L   G+A     L  KH  YT  +TGHSLGGAAAA+ A D+ E         +LYT G PR GD  FA  +N  V  AYRIVH +D+VPHL  C  G  G C  G+ A P+  +TE+ Y N M  G  +  CD   GED  C       +S++DH S
Sbjct:  192 GTVHKGFCEYYVKLAKLGVAGNFTALMEKHSDYTPVMTGHSLGGAAAALMAYDVYE-YSRGRAAALLYTYGMPRVGDFEFAKALNARVANAYRIVHARDIVPHLPPCV-GLLG-CSQGK-AMPHHTATEVFYPNAMRSGDNFTICDGS-GEDSHCSNGVAH-ISVSDHCS 355
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BLAST of mRNA_Ecto-sp13_S_contig8262.19610.1 vs. uniprot
Match: A0A090LP19_STRRB (Lipase, class 3 family-containing protein n=1 Tax=Strongyloides ratti TaxID=34506 RepID=A0A090LP19_STRRB)

HSP 1 Score: 112 bits (280), Expect = 2.170e-24
Identity = 69/169 (40.83%), Postives = 89/169 (52.66%), Query Frame = 1 
Query:  871 GNVHFGFCEFYQTLVAKGLAAKVLHLARKHPTYTIFVTGHSLGGAAAAVCAADLVERLGVASERVVLYTLGEPRAGDGIFADGINEHVGTAYRIVHDKDLVPHLSLCCHGWFGKCIGGEEACPYQHSTEIVYANDMSDGSPWIQCDDMVGEDYACDPQQGWDLSIADHV 1377
            G V   F   +  +  KGL    L L  K+PTY ++VTGHSLGGA A +CAA +V+   ++S  ++LYT+GEPR GD  F  G ++    AYRI+H  DLVPHL       FG            H  EI Y NDM+ GS +  C    G+D         DLSI DH+
Sbjct:  116 GAVSLYFYNAFNDVWTKGLKDSFLGLKNKYPTYKVYVTGHSLGGAMACICAATIVKSGYISSNNILLYTMGEPRVGDDDFVKGFDKLNIEAYRIIHKHDLVPHLPP--DHLFGY---------KHHKEEIFYNNDMTSGSKFKICS---GDDSNSCSSASVDLSINDHL 270
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BLAST of mRNA_Ecto-sp13_S_contig8262.19610.1 vs. uniprot
Match: A0A0K0E786_STRER (Lipase_3 domain-containing protein n=1 Tax=Strongyloides stercoralis TaxID=6248 RepID=A0A0K0E786_STRER)

HSP 1 Score: 110 bits (274), Expect = 1.460e-23
Identity = 68/164 (41.46%), Postives = 88/164 (53.66%), Query Frame = 1 
Query:  889 FCEFYQTLVAKGLAAKVLHLARKHPTYTIFVTGHSLGGAAAAVCAADLVERLGVASERVVLYTLGEPRAGDGIFADGINEHVGTAYRIVHDKDLVPHLSLCCHGWFGKCIGGEEACPYQHSTE-IVYANDMSDGSPWIQCDDMVGEDYACDPQQGWDLSIADHV 1377
            F   +  + +KGL    L L   +P Y +FVTGHSLGGA A +CAA +V+   V S  VVLYT+GEPR G+  F +G ++    AYRI+H  DLVPHL              E    Y+H  E I Y NDM+ GS + +C    G+D         DLSI DH+
Sbjct:  122 FYNAFNDVWSKGLKDSFLCLKNTYPQYKVFVTGHSLGGAMACLCAATIVKSGYVLSNNVVLYTMGEPRVGNDAFVEGFDKLKIEAYRIIHSHDLVPHLPP------------EHLFGYKHHREEIFYNNDMTLGSSYKKCS---GDDTNSCSSANVDLSIIDHL 270
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BLAST of mRNA_Ecto-sp13_S_contig8262.19610.1 vs. uniprot
Match: A0A4U5PHI8_STECR (Lipase_3 domain-containing protein n=1 Tax=Steinernema carpocapsae TaxID=34508 RepID=A0A4U5PHI8_STECR)

HSP 1 Score: 107 bits (267), Expect = 2.220e-22
Identity = 73/173 (42.20%), Postives = 98/173 (56.65%), Query Frame = 1 
Query:  871 GNVHFGFCEFYQTLVAKGLAAKVLHLARKHPTYTIFVTGHSLGGAAAAVCAADLVERLGVAS-ERVVLYTLGEPRAGDGIFADGINEHVGTAYRIVHDKDLVPHL--SLCCHGWFGKCIGGEEACPYQHS-TEIVYANDMSDGSPWIQCDDMVGEDYACDPQQGWDLSIADHV 1377
            G V   F E Y+ +   GL    L L  K+P Y I+VTGHSLGGA A++CAA LV  LG A+ E++ L T G PR GD  F D     V  +YR+VH++D+VPH+        W    + G     Y H+ +E+ YANDMS GS +I C+   GE + C  +    LSI+DH+
Sbjct:  128 GKVSRYFYEAYKKVWESGLKDDYLELRNKYPDYEIWVTGHSLGGAMASLCAATLVH-LGQANPEKLKLLTFGAPRIGDKAFVDVHEALVLYSYRVVHNRDIVPHVPPEFFPDSWL---LDG-----YLHTKSEVWYANDMSPGSDFIVCNS--GESWWCSDRDLITLSISDHL 289
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8262.19610.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZR8_ECTSI1.490e-23479.22Lipase_3 domain-containing protein n=1 Tax=Ectocar... [more]
A0A6H5KHF8_9PHAE1.290e-23180.00Lipase_3 domain-containing protein n=1 Tax=Ectocar... [more]
A0A835YPJ5_9STRA4.820e-3850.00Alpha/Beta hydrolase protein n=1 Tax=Tribonema min... [more]
A0A7S2HQX8_9STRA9.490e-3442.11Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
W7U7Q2_9STRA3.440e-3345.88Lipase class 3 n=3 Tax=Monodopsidaceae TaxID=42507... [more]
A0A7S4EY64_CHRCT7.340e-2844.71Hypothetical protein n=1 Tax=Chrysotila carterae T... [more]
A0A7S4BC24_CHRCT2.530e-2744.71Hypothetical protein n=2 Tax=Chrysotila carterae T... [more]
A0A090LP19_STRRB2.170e-2440.83Lipase, class 3 family-containing protein n=1 Tax=... [more]
A0A0K0E786_STRER1.460e-2341.46Lipase_3 domain-containing protein n=1 Tax=Strongy... [more]
A0A4U5PHI8_STECR2.220e-2242.20Lipase_3 domain-containing protein n=1 Tax=Steiner... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8262contigEcto-sp13_S_contig8262:1315..6971 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score663.3
Seed ortholog evalue8.2e-188
Seed eggNOG ortholog2880.D7FZR8
Model size1380
Hectar predicted targeting categorysignal peptide
Exons7
EggNOG free text desc.phospholipase A1 activity
EggNOG OGsKOG4569@1,KOG4569@2759
Cds size1380
COG Functional cat.G
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8262.19610.1prot_Ecto-sp13_S_contig8262.19610.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8262 1315..6971 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464095.941265-CDS-Ecto-sp13_S_contig8262:1314..14341681464095.941265-CDS-Ecto-sp13_S_contig8262:1314..1434Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8262 1315..1434 +
1681464095.951934-CDS-Ecto-sp13_S_contig8262:2415..25081681464095.951934-CDS-Ecto-sp13_S_contig8262:2415..2508Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8262 2416..2508 +
1681464095.9614384-CDS-Ecto-sp13_S_contig8262:3150..32551681464095.9614384-CDS-Ecto-sp13_S_contig8262:3150..3255Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8262 3151..3255 +
1681464095.970854-CDS-Ecto-sp13_S_contig8262:3926..47421681464095.970854-CDS-Ecto-sp13_S_contig8262:3926..4742Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8262 3927..4742 +
1681464095.9826596-CDS-Ecto-sp13_S_contig8262:5226..53491681464095.9826596-CDS-Ecto-sp13_S_contig8262:5226..5349Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8262 5227..5349 +
1681464096.0006964-CDS-Ecto-sp13_S_contig8262:6161..62481681464096.0006964-CDS-Ecto-sp13_S_contig8262:6161..6248Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8262 6162..6248 +
1681464096.0122013-CDS-Ecto-sp13_S_contig8262:6935..69711681464096.0122013-CDS-Ecto-sp13_S_contig8262:6935..6971Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8262 6936..6971 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8262.19610.1

>prot_Ecto-sp13_S_contig8262.19610.1 ID=prot_Ecto-sp13_S_contig8262.19610.1|Name=mRNA_Ecto-sp13_S_contig8262.19610.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=460bp
MHRRCRTAVYVGLFSIAAFLRAVLGGQHFEYDEDLGKLAVIYSSAAYDRV
EEWVFANSACNEQTKGFVFVESFVGEHTDAFGFVGVDTVGERIVVAFKGT
TDLQDWVTNLRTWIHYNHRCAPAGGTDAGAATTTYAGGEAVAPGQQTAGE
VSQSRSHQQHRRRPGDQQADLRGQDAKACGGGEDCVDGGPAESGAAPRFL
GREPFSGAGIVGGKDDNNNNNNNNNNNNNNNNNNNNNPGSSYGVGGRDPA
AAAGYGSSSNKEVAAREHGDAPGGEGSGAGDDGEDDRLLIGNVHFGFCEF
YQTLVAKGLAAKVLHLARKHPTYTIFVTGHSLGGAAAAVCAADLVERLGV
ASERVVLYTLGEPRAGDGIFADGINEHVGTAYRIVHDKDLVPHLSLCCHG
WFGKCIGGEEACPYQHSTEIVYANDMSDGSPWIQCDDMVGEDYACDPQQG
WDLSIADHVS
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mRNA from alignment at Ecto-sp13_S_contig8262:1315..6971+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8262.19610.1 ID=mRNA_Ecto-sp13_S_contig8262.19610.1|Name=mRNA_Ecto-sp13_S_contig8262.19610.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=5657bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8262:1315..6971+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCATCGCCGCTGCCGTACGGCTGTGTACGTCGGCCTTTTCTCCATTGC
GGCTTTTCTTAGAGCCGTCTTGGGCGGTCAGCACTTCGAGTATGACGAAG
ACCTAGGCAAGCTCGCAGTGGTGAGCACACATCATTTTCAACAGAAAATT
ACTGGATAAAGTACAGAAAATATATAGATGTCTTGCAGAATGTCCGAGGG
TGTATAGGTCCTCAAGAGGCGATGTTCACGGGAGACACTAGCTCCACGAC
CGATGTGTACCTCTTTGCTTGCCGCGAACTTTTCCATCCGCAGCTACTGT
AGCTGCAGTTTACCACCTCCAGCGAGCTCAAACTTGATTGATGACACGCA
CGAGCGTTTGAACATGGTACAACGGTGACTTTAGACCCCCGCTCAGCTCA
GGGCACTTGAGCTTTTCTCTTGTTGAAGCTTGCTTGGGTACGCCGTCCGG
CTGGTACCTTCGTGCAATAGCGAGAGCTTATTTTCCTACCGACTACCGTA
TAGGCATGCCGGCAGAATTTCGAGTGAAAAATTTCTGCTGCATCAACTTG
CTGCTGTACGCATATAGGAGTACTCGCAGCGTACCTAGGATGATTGCCGA
TATTTTTCACACGTGTTGCTATCTCTTTCCTGGGAGGTCGAAAAAATCAA
GTGTTCGGACTAAAAAATTAGCAGGTTGTAACAACAGCAGTAGCATTCGT
TGGTAGCATTCACGACAAGCACGATGGCCTTAGGAGTCACAGCTCGAGAG
ACAGCTTGGACGTGTTCGGAGAGGCATTTTCATCACTGTCTGCATTTTTA
TTACTGTCTGCTCACGTACGTACAAACCTAGATACGGTACACCTGGCTGT
CGGTGATGAACTGCTATGCGCGTCGTCTGAGCGTCGCGGACGAAAATGAA
GACGTGCACACCTGATTTCTGGCGGTCAACCTTTGGATAGTCCTATGATA
TGCATACAGCACTTGCCAGGCCCGCGGCGTTCCGTTGCGTCCTTCTATGT
GCCTGTGACTAGTCTGACATGTGCGCAAAAGATGGAAGTTCCTAATTACC
CCCCGCCTGTCGCTGAATCTTGGCCGGGCCGGGCTTGGTGCTTTGGCGCA
GATCTACAGCAGCGCCGCGTACGACAGGGTGGAAGAGTGGGTGTTCGCCA
ACTCGGCTTGCAACGAGCAGACGAAGGGGTTCGTATTCGTTGAGGTGGGA
CAGCAGAGTAGTTAGTACATGTGGCAGCCCGGTCGACCGCGACAGATACA
ACACAGACATTGTAGCGCCTGCAATTCTGGTTAATAGTGGCCAAGGCTGG
GGTTCTTGGTTCCTCTTGTGGCCGTATATAGGTTTGAGTGCGGCGAAAAG
TAGGCTTTGAGTGTAGGCGTTCATCACCGCGCAACAGGTGCCCAAGTTCC
TGCGTTTGATGCAATGTTGAGCATCAAGTTTTTACGTGCGGGCGATCTCT
ACAGCAGTTTGCTTTGTGCCGTCCGTCGGCGGAACCGGCGGCTGTTAGCG
AGTGGGTTCTGCGCGTGGGTATAGAAACTGTCCTTATTGGTGGCTACCAA
CGCTCGTGAGCAGCGCATCGACAACCAAAAGAGGTGTCACAATTGTGGAG
ATCCCCTTCTGTCGAGGACGGTTCTCTCTCTTCACGTTGGCCCACAAATA
TTACTCATGATGTTGTTGCTCCTTTGGGTTTTTCTTTTCGCTTGTCGCGT
TTCATGCATGACGCGAGCGTCTCGTGCGAGAATACTTGCGGTCATGCCCT
CCCTCGTTTGTTGTGTTGAGTCCTCTCTCTTTGTCGCGTGTCTGTCTTGT
CTGTTTGCGGCATGCTTGTTTTCGGTAACCAACCAGTCGTTCGTCGGCGA
GCACACGGACGCGTTTGGCTTCGTCGGAGTGGACACGGTTGGCGAGAGGA
TCGTTGTGGCTTTCAAAGGCACCACAGACTTACAAGATTGGGTGAGACGA
TGCCGTGTGGGAGGGCGCGTGTTGCTGAGTAGTGTGGGCATTGGCGGGAT
GTGTGGCTTTCAAAGGCACCACTGACTCGCATGAGTGGGTAAGAGGTTTC
GTGGGCAGGTTTCGGCTGGATGCAGAGTGCAGATGTGGTTTTCACAGGCA
CCAGCGGCGTGCATGACTCGGGTGGGGTGTTGTGGGAGCTGTTGTAGGGC
GCATGTGTGGGCGCGATAGGAGACGGGGAGCTGCAAGAGAAGGAGGGCAG
GCGAGGAAACGCAAGACTGCGGAGGCGGGGAGGGGAAGGCTCCCTTCTCG
GAGAGAGGCGTAAGAGACAGAAGCGGTAGTGGACAGGGAAGCTGGCACGG
TGCGGCTAAACGGATGCAAGGGCGGGACCGACGGCGTCGTGGAGAAATCG
ACCATCGTATATGCCACCTGCTGTTCTTCACACGACACGGAGATGGGGGT
CGGAACGGGAGCATCGGCATCACCCTCAGAGACAAGTTTGGTTGTGCTTT
GTCATCGAGAAGAACTCTTCACGAGCGGTAGGTAGCCTGCCCCCCGGGTG
AAAATGGAAATCTTTTTTCTATTTCCTTTTCATTGACGCCAACACGGAAA
GTCGTCTACTATCTTACCTGTACCATTACGAAAATTTTTTGCGCGTGCAA
CGATCGTTGCAGGTGACGAACCTACGAACTTGGATACACTACAATCATCG
CTGCGCGCCGGCGGGGGGGACAGACGCGGGCGCCGCCACCACCACCTACG
CAGGGGGCGAGGCCGTCGCCCCGGGCCAGCAAACGGCGGGGGAAGTATCG
CAATCGCGTTCGCATCAACAACATCGGAGACGACCAGGGGATCAACAGGC
TGACTTACGGGGGCAAGACGCGAAGGCCTGCGGCGGCGGTGAAGATTGCG
TTGATGGCGGGCCTGCGGAATCTGGAGCAGCTCCTCGGTTCTTGGGGCGT
GAACCGTTTTCCGGCGCTGGGATAGTCGGGGGGAAGGACGACAACAACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACCCAGGATCATCATACGGAGTCGGGGGCAGGGATCCGGCGGCGGCG
GCGGGCTACGGGTCGTCGTCCAACAAGGAGGTGGCCGCGCGAGAGCATGG
CGACGCACCCGGAGGAGAAGGGTCAGGAGCGGGCGACGACGGCGAGGACG
ACCGGCTGCTGATAGGCAACGTGCACTTCGGCTTCTGCGAGTTCTACCAG
ACGCTGGTCGCCAAGGGCCTGGCCGCCAAGGTCCTGCACCTCGCCCGCAA
ACACCCGACCTACACGATCTTCGTCACGGGGCACTCGCTGGGCGGGGCGG
CGGCGGCGGTGTGCGCGGCGGACCTGGTCGAGAGGCTAGGGGTGGCCAGC
GAGCGGGTGGTGCTGTACACGCTGGGGGAGCCGCGCGCGGGGGACGGGAT
TTTCGCGGATGGGATCAACGAGCACGTGGTGAGCTATGCATGCGAGCCCT
GAGATTTGATGGGGGCCTTTTTTTTTTTTGGTTCTCAGGAGTTTTTGTTT
TGTGCGGTCGGTCGCTTCGTCTGTGGGTGTAGGATCATTGAATGTCCTAC
GTGTTGTTGGATATGCTGCGTACCCCGCTGCTGGGTGGTATTAGCCACTT
GTTCTGCGTTTCTCGATCCCGCCGGGAGTGTGAGCGAGATCAAGGGGACG
TACGGCTAAGACGTGGTGGCAGTTTCATGCAAGCCCTTGGACAACTGTTG
TTGGATCACCTTCCCCCCCTAGCAGGGTGGCCTGTGATTGGCTCGTAACA
CCGGGAATGGTCATGTTTCTCTTGAACGGTTTGGGTGTGAAACCGTTGTT
CAAGAAGGTTTCCAGATCATCATTCTTCCTTTCCTCTGACGCATTTTATT
GCTTTTTTTGTCGCTGCCGCCCGTCCGCCATCCTCGCGCTCACGGCGCGG
TCGGCAACACAGGGGACGGCCTACCGCATCGTGCACGACAAAGACTTGGT
GCCCCATCTGTCGCTTTGCTGCCACGGTTGGTTCGGCAAATGCATAGGCG
GGGAGGAGGCATGCCCCTACCAGCACAGCACCGAGGTATGTTTCGTGTTC
TCAGTGTTGGCATCGACCGCGCTCTTACCCGCAGACAATGAAAAGACGTC
AGTCTCAAGTGAGGCTGAAAACAGAAAGTGAGGCCCTCATCCGGGGCCCA
TGATTGGCGCGCCCATGGGAGAGGCTAAGCTTCTGTGTCTTTGGGCTGAC
AAAAATCACAAGAGCTCAGTCTCGGTGCCTGTGTCAAGACGGGTATGTGT
ACGCTTAAAAGGCCGTGATGTGTGTGTGTATATGCGAGTGCGTGCCTGCG
TGCGTTTCTTCATTTTGCATCGACAGCGCTATGTAACCAACTGGCCAACG
AAATTATGTCAGTCTCAGTGTGGGAGCTGTAAAGCCTGGAAACTATTTCC
ATGGGCCGTTTTGTGTGTGTGTGTATGTACGCGCGCGTGGATTTTAGTAA
GCGTCGACCGCGCTAGCTGTTAGAACAACGAATGAGGCAACCTTCATGGC
GGGATACAAAACGTGAAGTACGTACTATTGCATTTGTCACCGACGCGGAT
ACGCTTGCACGCGGACGGGCGGGGGTGCACGCCCCTCTTGCCGAACGACA
CACGCTGGGCTGAATCAATCGTGCTTACTCTTGTGTAGAATCATTGCAAG
AAGATTGTGTCGTCTTCGTGCTGCTCACACGACGGCACTATGACAAACAC
AGCATTTACTTTTGGCCTCAAGAGGCACGAAATGAGTACACATGCACGCC
TTGATCGATCTCGTGTGTCTCCCGCTTTTACAATTGTTTTCTTCTCTGAG
TGCGACGCGATTGAAACCGCCTGTTTTTTTCTTCTTTTTGTGTGCAGATA
GTGTACGCCAACGACATGAGCGACGGATCCCCCTGGATTCAGTGCGACGA
CATGGTCGGAGAGGACTACGCATGCGATCCCCAGGTAGTATTTCTGTGTG
TGTATTTATTATCCTAATCTTGTCACTCTCTCTCTCTCTCTCTCTCTCTC
GGCTTTTTTACCCGTGGTGTGCTTGCTGTTTGGTCCATTCACAACAGTGT
GTTGATTGTTCCCCCAACACGAAGGTGGGTGGTACACTGTTCTCGAGGTA
GACATGGATGATTCGAAAGCTGAAGACACCGGCAAACGCACCTTCTTCAG
GCGCATCGTTCTGCAGATACGTTTTATTTCTGCTTTGTTTTTCGTTCGCA
TTACAAAGCCTGACGCACACGATTCGTCTCAACAATACAAAAAGGTGGGT
TGTTCGCTTGGTCGAGAAAAACTCTTGAGCTCGAGAAATTCCACTTTATG
TCCACAACTCAAGTTTTACTTCAAGGCTTCAAGTTTTTTTGCCCGAGTCC
TCTAGCTTTTTTGCTCCACAATAACTTGAACGAAGACGGGGGTGTCCAAT
TTTTGAGAAAGTCAACACATCCTGACAGAAAAAAAGTACCCGTTCGAAAT
ATAAGCTCAGTCGAAAGGGATTTTTTTCTTCCGACCTATATTGTTTGCCT
TGATGAGGGTTTCACCAGCTGCTGCGGCACTGCTGCTGCTGTTGCTGTCT
GTCATAGCCGGGTGTTGACTGCCCCCCCCCCTCATGTCTTCGTCTCTTGT
GCGCTCGCCTGTACGGACAAGCAGGGTTGGGATCTGAGCATCGCGGATCA
CGTCAGC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8262:1315..6971+

>mRNA_Ecto-sp13_S_contig8262.19610.1 ID=mRNA_Ecto-sp13_S_contig8262.19610.1|Name=mRNA_Ecto-sp13_S_contig8262.19610.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=1380bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8262:1315..6971+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCATCGCCGCTGCCGTACGGCTGTGTACGTCGGCCTTTTCTCCATTGC
GGCTTTTCTTAGAGCCGTCTTGGGCGGTCAGCACTTCGAGTATGACGAAG
ACCTAGGCAAGCTCGCAGTGATCTACAGCAGCGCCGCGTACGACAGGGTG
GAAGAGTGGGTGTTCGCCAACTCGGCTTGCAACGAGCAGACGAAGGGGTT
CGTATTCGTTGAGTCGTTCGTCGGCGAGCACACGGACGCGTTTGGCTTCG
TCGGAGTGGACACGGTTGGCGAGAGGATCGTTGTGGCTTTCAAAGGCACC
ACAGACTTACAAGATTGGGTGACGAACCTACGAACTTGGATACACTACAA
TCATCGCTGCGCGCCGGCGGGGGGGACAGACGCGGGCGCCGCCACCACCA
CCTACGCAGGGGGCGAGGCCGTCGCCCCGGGCCAGCAAACGGCGGGGGAA
GTATCGCAATCGCGTTCGCATCAACAACATCGGAGACGACCAGGGGATCA
ACAGGCTGACTTACGGGGGCAAGACGCGAAGGCCTGCGGCGGCGGTGAAG
ATTGCGTTGATGGCGGGCCTGCGGAATCTGGAGCAGCTCCTCGGTTCTTG
GGGCGTGAACCGTTTTCCGGCGCTGGGATAGTCGGGGGGAAGGACGACAA
CAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACAACA
ACAACAACAACCCAGGATCATCATACGGAGTCGGGGGCAGGGATCCGGCG
GCGGCGGCGGGCTACGGGTCGTCGTCCAACAAGGAGGTGGCCGCGCGAGA
GCATGGCGACGCACCCGGAGGAGAAGGGTCAGGAGCGGGCGACGACGGCG
AGGACGACCGGCTGCTGATAGGCAACGTGCACTTCGGCTTCTGCGAGTTC
TACCAGACGCTGGTCGCCAAGGGCCTGGCCGCCAAGGTCCTGCACCTCGC
CCGCAAACACCCGACCTACACGATCTTCGTCACGGGGCACTCGCTGGGCG
GGGCGGCGGCGGCGGTGTGCGCGGCGGACCTGGTCGAGAGGCTAGGGGTG
GCCAGCGAGCGGGTGGTGCTGTACACGCTGGGGGAGCCGCGCGCGGGGGA
CGGGATTTTCGCGGATGGGATCAACGAGCACGTGGGGACGGCCTACCGCA
TCGTGCACGACAAAGACTTGGTGCCCCATCTGTCGCTTTGCTGCCACGGT
TGGTTCGGCAAATGCATAGGCGGGGAGGAGGCATGCCCCTACCAGCACAG
CACCGAGATAGTGTACGCCAACGACATGAGCGACGGATCCCCCTGGATTC
AGTGCGACGACATGGTCGGAGAGGACTACGCATGCGATCCCCAGCAGGGT
TGGGATCTGAGCATCGCGGATCACGTCAGC
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