mRNA_Ecto-sp13_S_contig8227.19583.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8227.19583.1
Unique NamemRNA_Ecto-sp13_S_contig8227.19583.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8227.19583.1 vs. uniprot
Match: D7FTU6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTU6_ECTSI)

HSP 1 Score: 317 bits (811), Expect = 5.250e-96
Identity = 181/229 (79.04%), Postives = 185/229 (80.79%), Query Frame = 1 
Query:    1 CDPTCLDGVTDPLHCNYFGLGQICRGCGECSXXXXXXXXXXXXXXXXXXPTMMPDLGFD-LTTPSPVTTETPAPSAKPVMHTRSPETPGTVPPTXXXXXXXXXPTPLPTMMPLGADGAVDDDECSVCSNLTDEQVAVLASYDNGGKQVVCDPTCLDGVTDPLHCNYFGLGQICRGCGDCSXXXXXXXXXXXXXXXXXPTMMPDLGFDDLTTPSPVTPETPAPSAKPVMH 684
            CDP+CLDGVTDPLHCNYFGLGQICRGCGECSXXXXXXXXXXXXXXXXX PTMMPDLGFD L TPSPVT ETPAPSAKPVMHT                     PTP PTMMPLGADGAVDDDECSVCSNLTDEQVAVLASYDNGGKQVVCDP+CLDGVTDPLHCNYFGLGQICRGCG+CS                 PTM+PDLGFDDL TPSPVTPETPAPSAKPVMH
Sbjct: 1192 CDPSCLDGVTDPLHCNYFGLGQICRGCGECSXXXXXXXXXXXXXXXXX-PTMMPDLGFDDLFTPSPVTPETPAPSAKPVMHTPXXXXXXXXXXXVAETPESEVPTPSPTMMPLGADGAVDDDECSVCSNLTDEQVAVLASYDNGGKQVVCDPSCLDGVTDPLHCNYFGLGQICRGCGECSLCEPCPGATPAPETTSSPTMVPDLGFDDLFTPSPVTPETPAPSAKPVMH 1419
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BLAST of mRNA_Ecto-sp13_S_contig8227.19583.1 vs. uniprot
Match: A0A6H5L1V0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1V0_9PHAE)

HSP 1 Score: 213 bits (542), Expect = 3.200e-65
Identity = 137/234 (58.55%), Postives = 148/234 (63.25%), Query Frame = 1 
Query:    1 CDPTCLDGVTDPLHCNYFGLGQICRGCGECSXXXXXXXXXXXXXXXXXXPTMMPDLGFDLTTPSPVTTETPAPSAKPV--------------------------------------MHTRSPETPGTVPPTXXXXXXXXXP-------------------TPLPTMMPLGADGAVDDDECSVCSNLTDEQVAVLASYDNGGKQVVCDPTCLDGVTDPLHCNYFGLGQICRGCGD 531
            CDPTCLDGVTDPLHCNYFGLGQICRGCG+CSXXXXXXXXXXXXXXXXX PTM+PDLGFDLTTPSPVT ETPAPS K V                                      + T SP TP T  P+                             TP PTMMPLGADGAVDDDECSVCSNLT+ Q+  LA+Y +GGKQV+CDP C+DG +D  HCNYFGLGQICRGCGD
Sbjct:   41 CDPTCLDGVTDPLHCNYFGLGQICRGCGDCSXXXXXXXXXXXXXXXXX-PTMIPDLGFDLTTPSPVTPETPAPSVKAVKRTPSXXXXXXXXXXXXETPAPKATTPSPTMEPDLGFDLTTPSPVTPETPAPSAKPVKQTPSXXXXXXXXXXXXXXXXXXXXTPSPTMMPLGADGAVDDDECSVCSNLTEAQMESLAAYPDGGKQVICDPRCVDGNSDITHCNYFGLGQICRGCGD 273
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BLAST of mRNA_Ecto-sp13_S_contig8227.19583.1 vs. uniprot
Match: A0A6H5L314_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L314_9PHAE)

HSP 1 Score: 211 bits (538), Expect = 6.620e-62
Identity = 163/324 (50.31%), Postives = 169/324 (52.16%), Query Frame = 1 
Query:    1 CDPTCLDGVTDPLHCNYFGLGQICRGCGECSXXXXXXXXXXXXXXXXXXPTMMPDLGFD-LTTPSPVTTETPAP--------------------------------------------------------------------------------------------------------------SAKPVMHTRSPETPGTVPPTXXXXXXXXXPTPLPTMMPLGADGAVDDDECSVCSNLTDEQVAVLASYDNGGKQVVCDPTCLDGVTDPLHCNYFGLGQICRGCGDCSXXXXXXXXXXXXXXXXXPTMMPDLGFDDLTTPSP 639
            CDP C+   TD LHCNYFGLGQICRGCGEC                   P+  P LGFD L+TPSP+T ETPAP                                                                                                              SAKPV  T S          XXXXXXXXX TP PTMMPLGADGAVDDDECSVCSNLTDEQVA+LASYDNGGKQVVCDPTCLDGVTDPLHCNYFGLGQICRGCGDCSXXXXXXXXXXXXXXXXXPTM+PDLGFD LTTPSP
Sbjct:  199 CDPACVGEATDVLHCNYFGLGQICRGCGECDDGWCQPCPDATPWPVVPTPSPAP-LGFDSLSTPSPITPETPAPVKSXXXXXXXXXXPXTVAETPAPKAXXXXXXVVPDPTSDPXXXXXXXXXXXXXXXKAVKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLGFDLXXXXXXXXXXXXXSAKPVKQTPSXXXXXXXXXXXXXXXXXXXXTPSPTMMPLGADGAVDDDECSVCSNLTDEQVAILASYDNGGKQVVCDPTCLDGVTDPLHCNYFGLGQICRGCGDCSXXXXXXXXXXXXXXXXXPTMIPDLGFD-LTTPSP 520
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BLAST of mRNA_Ecto-sp13_S_contig8227.19583.1 vs. uniprot
Match: A0A6H5KTW1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTW1_9PHAE)

HSP 1 Score: 84.7 bits (208), Expect = 2.020e-15
Identity = 37/64 (57.81%), Postives = 46/64 (71.88%), Query Frame = 1 
Query:  346 GAVDDDECSVCSNLTDEQVAVLASYDNGGKQVVCDPTCLDGVTDPLHCNYFGLGQICRGCGDCS 537
            G+  D E ++C++++  Q   LA YD GGK +VCDPTCL G  D  HCNYFGLGQ+CRGCG CS
Sbjct:  310 GSCTDAEIAMCADISPAQEEALAMYDGGGKVIVCDPTCLGG--DISHCNYFGLGQLCRGCGSCS 371
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BLAST of mRNA_Ecto-sp13_S_contig8227.19583.1 vs. uniprot
Match: D8LI25_ECTSI (Mucin 17-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LI25_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 4.450e-15
Identity = 40/66 (60.61%), Postives = 48/66 (72.73%), Query Frame = 1 
Query:  337 GADGAVDDDECSVCSNLTDEQVAVLASYDNGGKQVVCDPTCLDGVTDPLHCNYFGLGQICRGCGDC 534
            GAD     D C+ CSNL++ Q+  LA++  G K+VVCD  CLDGV D L C+YFGLGQICRGCGDC
Sbjct: 1171 GADADTTSD-CAACSNLSEVQMLALAAHPGGAKRVVCDSDCLDGV-DVLDCDYFGLGQICRGCGDC 1234
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BLAST of mRNA_Ecto-sp13_S_contig8227.19583.1 vs. uniprot
Match: D7G4W7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G4W7_ECTSI)

HSP 1 Score: 79.0 bits (193), Expect = 2.590e-13
Identity = 34/58 (58.62%), Postives = 42/58 (72.41%), Query Frame = 1 
Query:  364 ECSVCSNLTDEQVAVLASYDNGGKQVVCDPTCLDGVTDPLHCNYFGLGQICRGCGDCS 537
            E ++C++++  Q   LA YD GGK +VCDPTCL    D  HCNYFGLGQ+CRGCG CS
Sbjct:  351 EIAMCADISPAQEEALAMYDGGGKVIVCDPTCLG--EDISHCNYFGLGQLCRGCGSCS 406
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BLAST of mRNA_Ecto-sp13_S_contig8227.19583.1 vs. uniprot
Match: D8LDU5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDU5_ECTSI)

HSP 1 Score: 51.2 bits (121), Expect = 7.020e-5
Identity = 27/59 (45.76%), Postives = 37/59 (62.71%), Query Frame = 1 
Query:  352 VDDDECSVCSNLTDEQVAVLASYDNGGKQVVCDPTCLDGVTD-PLHCNYFGLGQICRGC 525
            V  +EC V S+L+D     L+ YD   K +  +P C++G +  P+HCNY GLGQ CRGC
Sbjct:   20 VKAEECIV-SSLSDAAQEQLSMYD---KDLYLEPDCVNGASPMPVHCNYMGLGQECRGC 74
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8227.19583.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 7
Match NameE-valueIdentityDescription
D7FTU6_ECTSI5.250e-9679.04Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L1V0_9PHAE3.200e-6558.55Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L314_9PHAE6.620e-6250.31Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KTW1_9PHAE2.020e-1557.81Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LI25_ECTSI4.450e-1560.61Mucin 17-like protein n=1 Tax=Ectocarpus siliculos... [more]
D7G4W7_ECTSI2.590e-1358.62Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LDU5_ECTSI7.020e-545.76Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8227contigEcto-sp13_S_contig8227:70..2089 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start0
Seed ortholog score318.9
Seed ortholog evalue2e-84
Seed eggNOG ortholog2880.D7FTU6
Model size730
Hectar predicted targeting categoryother localisation
Exons3
EggNOG free text desc.structural constituent of cuticle
EggNOG OGsKOG3544@1,KOG3544@2759
Cds size729
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464093.7496724-CDS-Ecto-sp13_S_contig8227:69..1181681464093.7496724-CDS-Ecto-sp13_S_contig8227:69..118Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8227 70..118 +
1681464093.7621853-CDS-Ecto-sp13_S_contig8227:770..12141681464093.7621853-CDS-Ecto-sp13_S_contig8227:770..1214Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8227 771..1214 +
1681464093.7723842-CDS-Ecto-sp13_S_contig8227:1852..20881681464093.7723842-CDS-Ecto-sp13_S_contig8227:1852..2088Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8227 1853..2088 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8227.19583.1prot_Ecto-sp13_S_contig8227.19583.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8227 70..2088 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8227.19583.1

>prot_Ecto-sp13_S_contig8227.19583.1 ID=prot_Ecto-sp13_S_contig8227.19583.1|Name=mRNA_Ecto-sp13_S_contig8227.19583.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=243bp
CDPTCLDGVTDPLHCNYFGLGQICRGCGECSSCEPCPGTTPAPKTTTPSP
TMMPDLGFDLTTPSPVTTETPAPSAKPVMHTRSPETPGTVPPTVAETPEP
EVPTPLPTMMPLGADGAVDDDECSVCSNLTDEQVAVLASYDNGGKQVVCD
PTCLDGVTDPLHCNYFGLGQICRGCGDCSSCEPCPGTTPAPETTSSPTMM
PDLGFDDLTTPSPVTPETPAPSAKPVMHTPSPETPETVPPTVA
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mRNA from alignment at Ecto-sp13_S_contig8227:70..2089+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8227.19583.1 ID=mRNA_Ecto-sp13_S_contig8227.19583.1|Name=mRNA_Ecto-sp13_S_contig8227.19583.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=2020bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8227:70..2089+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGCGACCCCACCTGCTTGGACGGCGTCACCGACCCTCTGCACTGCAACTG
TGAGTCGGAGGTTCGAAATGATACTGAAATTTGAGGCACCGCGAGCTAGA
GTGTGGGTCTCGACCGTGAAAACGGCTGGCCAAGGAGACTAGAAGCAGAG
CAGCGCGATACACTGACAGATGCGCACTAGAACGACAAAGAAACCGCCGT
GTAGACAGACGATACACAGAGAGAGAGGATCAAGAGCAGGCAGAAAATCG
ATTTCAAAGAGGGTGCTGCGAGTAAAGGCAGTTCCAAGCAAGCGAGAGTG
CTCTCGACGCGATTTTCAAGTTTCCGGTCATCCCATAGCTTTTCATGTGA
GCTCCCACAATCCCAACCGCTCTTTCCCTGCTAGTCATCACCGATCTTCT
CATCAACTTTCGCGACGTTTAGCGCTAGCTTTCCGGTATACTTTCCAATC
CAAGACTGTACTATGCTTCACCCGGCGTTGGTGTTGCTTAAGCTGAAAGC
ACCTCACAGGGGGCTAGTCAGTAGTCCCTCCTCTTCCGATGGTTGCAAAG
TGCCCATTCGGACGTTTTGAGTAGTCTTCAGGTAGTTACAAAGTGCCAAC
ACAGGTCTCTTGTGTCGCCGACAGGTAGACGAACGCCGTCTAACAAGTAC
GTTCCCCCGCCGTCCGTGCTTCACCGCCCCATCTCCACCTGCAACCCCCA
GACTTCGGCCTGGGACAGATCTGCAGGGGCTGCGGCGAATGCTCTTCCTG
CGAGCCTTGCCCGGGGACAACCCCCGCGCCCAAAACGACCACCCCCTCAC
CGACGATGATGCCCGACCTCGGCTTTGATCTTACCACTCCGAGCCCCGTC
ACGACCGAGACACCGGCGCCTTCCGCTAAGCCGGTGATGCACACGCGCTC
CCCCGAGACGCCGGGGACCGTACCGCCGACCGTTGCCGAGACGCCCGAGC
CCGAAGTGCCTACTCCCTTGCCGACGATGATGCCGCTCGGAGCCGACGGT
GCTGTCGACGACGACGAGTGCTCCGTCTGCTCGAACCTGACAGACGAGCA
AGTAGCGGTTCTGGCCAGCTACGACAACGGCGGGAAGCAGGTGGTGTGCG
ACCCCACCTGCTTGGACGGCGTCACCGACCCTCTGCACTGCAACTGTGAG
TCGGGGGGGTTCAGATTGGTGTTGAATTTGCGGCACCGCGAGCTAGAGTG
TGGGTCTCGACCGTGAAAACGGCTGGCCAAGGAGACTAGAAGCAGAGCAG
CGCGATGCACTGATAGAGGTGCACTTGAACAACAAAGAGACCGCCGCATA
CACAGAGGACGAACACACACAAAGGATCAAGAGCAGACAGAAAATCGATT
TCAAAGAGGGTGCTGCGAGTACAGGCAGTTGCAAGTGAGCGAGAGTGCCC
TTGAGGAGATTTTCAAGTTTCCGGTCGTCTCGTAGCCTTTTTGGTGAGCC
ATTTCCAGTCTCTCACAATCCCAATCATCTTTTCCCTGCCAACAATGTGA
TACGCTCATCAACTTTCGCGACGCTGTTCAATGCCATTCGAGTCCTTTAT
CTAAGCCTGTCTCAGATGAAAGACTGTACTATGTTTCTCGCATTGTATGC
ATAAGTGTTCCTTCAGCTGAAAGCACCTCACAGGGGGCTAGTCAGTCTTC
CTCCCTCCGTCGATAGCTGCAAAGTGCCAACACAGGTCGCTTGTGTCGCC
GACAGGTAGACGAACGCCGTCTAACAAGTACGTCCCCCCCGCCCTACGTG
CTTCACCGCCCTATCTCCACCCGCAACACCCAGACTTCGGCCTGGGACAG
ATCTGCAGGGGCTGCGGCGACTGCTCTTCCTGCGAGCCTTGCCCGGGGAC
AACCCCCGCGCCCGAGACAACGTCCTCACCGACGATGATGCCCGACCTCG
GCTTCGATGATCTTACCACTCCGAGCCCCGTCACGCCCGAGACACCGGCG
CCTTCCGCTAAGCCGGTGATGCACACGCCCTCCCCCGAGACGCCGGAGAC
CGTACCGCCGACCGTTGCCG
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8227:70..2089+

>mRNA_Ecto-sp13_S_contig8227.19583.1 ID=mRNA_Ecto-sp13_S_contig8227.19583.1|Name=mRNA_Ecto-sp13_S_contig8227.19583.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=729bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8227:70..2089+ (Ectocarpus species13 EcNAP12_S_4_19m)
TGCGACCCCACCTGCTTGGACGGCGTCACCGACCCTCTGCACTGCAACTA
CTTCGGCCTGGGACAGATCTGCAGGGGCTGCGGCGAATGCTCTTCCTGCG
AGCCTTGCCCGGGGACAACCCCCGCGCCCAAAACGACCACCCCCTCACCG
ACGATGATGCCCGACCTCGGCTTTGATCTTACCACTCCGAGCCCCGTCAC
GACCGAGACACCGGCGCCTTCCGCTAAGCCGGTGATGCACACGCGCTCCC
CCGAGACGCCGGGGACCGTACCGCCGACCGTTGCCGAGACGCCCGAGCCC
GAAGTGCCTACTCCCTTGCCGACGATGATGCCGCTCGGAGCCGACGGTGC
TGTCGACGACGACGAGTGCTCCGTCTGCTCGAACCTGACAGACGAGCAAG
TAGCGGTTCTGGCCAGCTACGACAACGGCGGGAAGCAGGTGGTGTGCGAC
CCCACCTGCTTGGACGGCGTCACCGACCCTCTGCACTGCAACTACTTCGG
CCTGGGACAGATCTGCAGGGGCTGCGGCGACTGCTCTTCCTGCGAGCCTT
GCCCGGGGACAACCCCCGCGCCCGAGACAACGTCCTCACCGACGATGATG
CCCGACCTCGGCTTCGATGATCTTACCACTCCGAGCCCCGTCACGCCCGA
GACACCGGCGCCTTCCGCTAAGCCGGTGATGCACACGCCCTCCCCCGAGA
CGCCGGAGACCGTACCGCCGACCGTTGCC
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