mRNA_Ecto-sp13_S_contig8226.19582.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8226.19582.1
Unique NamemRNA_Ecto-sp13_S_contig8226.19582.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig8226.19582.1 vs. uniprot
Match: D7G5T3_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5T3_ECTSI)

HSP 1 Score: 117 bits (292), Expect = 2.240e-32
Identity = 67/72 (93.06%), Postives = 67/72 (93.06%), Query Frame = 1 
Query:    1 MAGRDDGGSETSGGPAAGSSQEVASLNAEMGLLSEQISQLTMLVTSLASRKMEESGGAKEGTAGRGNATESI 216
            MAGRDDGGSETSG PA GSSQEVASL AEMG LSEQISQLTMLVTSLASRKMEESGGAKEG AGRGNATESI
Sbjct:    1 MAGRDDGGSETSGDPAGGSSQEVASLKAEMGSLSEQISQLTMLVTSLASRKMEESGGAKEGAAGRGNATESI 72
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BLAST of mRNA_Ecto-sp13_S_contig8226.19582.1 vs. uniprot
Match: A0A6H5K905_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K905_9PHAE)

HSP 1 Score: 99.4 bits (246), Expect = 2.460e-22
Identity = 62/77 (80.52%), Postives = 63/77 (81.82%), Query Frame = 1 
Query:    1 MAGRDDGGSETSGGPAAGSSQEVASLNAEMGLLSEQISQLTMLVT-SLASRKMEESGGAKEGTAGRGNATESI*TRP 228
            MAGRDD G ETSG PAA SSQEVASL AEMG LSEQISQLTML T SL S KMEESGGAKEG AGRGNATES+   P
Sbjct:    1 MAGRDDAGIETSGDPAAESSQEVASLKAEMGSLSEQISQLTMLPTLSLGSCKMEESGGAKEGAAGRGNATESVDASP 77
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8226.19582.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G5T3_ECTSI2.240e-3293.06Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K905_9PHAE2.460e-2280.52Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8226contigEcto-sp13_S_contig8226:2292..2566 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size275
Hectar predicted targeting categoryother localisation
Exons1
Cds size219
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464093.6470134-CDS-Ecto-sp13_S_contig8226:2291..25101681464093.6470134-CDS-Ecto-sp13_S_contig8226:2291..2510Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8226 2292..2510 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464093.6632252-UTR-Ecto-sp13_S_contig8226:2510..25661681464093.6632252-UTR-Ecto-sp13_S_contig8226:2510..2566Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig8226 2511..2566 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8226.19582.1prot_Ecto-sp13_S_contig8226.19582.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8226 2292..2510 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8226.19582.1

>prot_Ecto-sp13_S_contig8226.19582.1 ID=prot_Ecto-sp13_S_contig8226.19582.1|Name=mRNA_Ecto-sp13_S_contig8226.19582.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=73bp
MAGRDDGGSETSGGPAAGSSQEVASLNAEMGLLSEQISQLTMLVTSLASR
KMEESGGAKEGTAGRGNATESI*
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mRNA from alignment at Ecto-sp13_S_contig8226:2292..2566+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8226.19582.1 ID=mRNA_Ecto-sp13_S_contig8226.19582.1|Name=mRNA_Ecto-sp13_S_contig8226.19582.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=275bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8226:2292..2566+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGGGTCGTGACGACGGAGGTAGTGAGACCTCCGGTGGTCCTGCGGC
GGGAAGCTCACAAGAGGTCGCGAGTTTGAATGCGGAAATGGGTTTGCTGT
CGGAGCAGATCAGCCAGCTGACGATGCTGGTGACAAGTCTAGCTTCACGC
AAGATGGAGGAGTCTGGCGGTGCCAAGGAGGGTACTGCTGGACGCGGGAA
CGCTACGGAGAGCATATAGACGCGTCCCCTGCGGTAGCTCATGGAGGGGC
ACCGCAGATCGAGAGCGCGCGAACT
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8226:2292..2566+

>mRNA_Ecto-sp13_S_contig8226.19582.1 ID=mRNA_Ecto-sp13_S_contig8226.19582.1|Name=mRNA_Ecto-sp13_S_contig8226.19582.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=219bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8226:2292..2566+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGCGGGTCGTGACGACGGAGGTAGTGAGACCTCCGGTGGTCCTGCGGC
GGGAAGCTCACAAGAGGTCGCGAGTTTGAATGCGGAAATGGGTTTGCTGT
CGGAGCAGATCAGCCAGCTGACGATGCTGGTGACAAGTCTAGCTTCACGC
AAGATGGAGGAGTCTGGCGGTGCCAAGGAGGGTACTGCTGGACGCGGGAA
CGCTACGGAGAGCATATAG
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