mRNA_Ecto-sp13_S_contig8224.19580.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig8224.19580.1
Unique NamemRNA_Ecto-sp13_S_contig8224.19580.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
BLAST of mRNA_Ecto-sp13_S_contig8224.19580.1 vs. uniprot
Match: D8LGP2_ECTSI (LIP1, Ras superfamily GTPase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGP2_ECTSI)

HSP 1 Score: 277 bits (708), Expect = 7.640e-91
Identity = 135/139 (97.12%), Postives = 137/139 (98.56%), Query Frame = 1
Query:    1 MDASAGKNFDPHHARVLVVGPMAAGKTTLVHSFCHGGGGNVVPGNTLPTVGCSVDVKLFAGGHPNRSIEFWDVGGSPDAALARGMFFEGCEAAGVLLVYDVSIPRSLRDLRVWVAELDSAGISVLGESGNNGRSSATAS 417
            MDASAGKNFDPHHARVLVVGPMAAGKTTLVHSFCHGGGGN VPGNTLPTVGCSVDVKL AGGHPNRSIEFWDVGGSPDAALARGMFFEGCEAAGVLLVYDVSIPRSLRDLRVWVAELDSAGIS+LG+SGNNGRSSATAS
Sbjct:    1 MDASAGKNFDPHHARVLVVGPMAAGKTTLVHSFCHGGGGNGVPGNTLPTVGCSVDVKLLAGGHPNRSIEFWDVGGSPDAALARGMFFEGCEAAGVLLVYDVSIPRSLRDLRVWVAELDSAGISILGKSGNNGRSSATAS 139          
BLAST of mRNA_Ecto-sp13_S_contig8224.19580.1 vs. uniprot
Match: A0A6H5JCT8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCT8_9PHAE)

HSP 1 Score: 265 bits (677), Expect = 2.880e-88
Identity = 130/138 (94.20%), Postives = 131/138 (94.93%), Query Frame = 1
Query:    1 MDASAGKNFDPHHARVLVVGPMAAGKTTLVHSFCHGGGGNVVPGNTLPTVGCSVDVKLFAGGHPNRSIEFWDVGGSPDAALARGMFFEGCEAAGVLLVYDVSIPRSLRDLRVWVAELDSAGISVLGESGNNGRSSATA 414
            MDASAGKNFDPHHAR+LVVGPMAAGKTTLVHSFCHGG GN VPGN LPTVGCSVDVKL AGGHPNRSIEFWDVGG PDAALARGMFFEGCEAAGVLLVYDVS PRSLRDLRVWVAELDSAGISVLGES NNGRSSATA
Sbjct:    1 MDASAGKNFDPHHARILVVGPMAAGKTTLVHSFCHGGVGNGVPGNRLPTVGCSVDVKLLAGGHPNRSIEFWDVGGRPDAALARGMFFEGCEAAGVLLVYDVSTPRSLRDLRVWVAELDSAGISVLGESDNNGRSSATA 138          
BLAST of mRNA_Ecto-sp13_S_contig8224.19580.1 vs. uniprot
Match: E9HD57_DAPPU (Uncharacterized protein n=4 Tax=Daphnia TaxID=6668 RepID=E9HD57_DAPPU)

HSP 1 Score: 75.5 bits (184), Expect = 8.230e-14
Identity = 42/115 (36.52%), Postives = 64/115 (55.65%), Query Frame = 1
Query:   22 NFDPHHARVLVVGPMAAGKTTLVHSFCHGGGGNVVPGNTLPTVGCSVDVKLF-----AGGHPNRSIEFWDVGGSPDAALARGMFFEGCEAAGVLLVYDVSIPRSLRDLRVWVAEL 351
            + D    R++V+G    GKT+L+H+ CHG    ++  N   T+GCSVDVKL              +E WDVGGS      R +F+    A G++LV+D++  +S  +LR W+AE+
Sbjct:    3 SIDIDKVRIIVIGDSGVGKTSLIHTLCHGE--PII--NPTWTIGCSVDVKLHEYREGTSAQKTFFVELWDVGGSSGHKNTRSVFYT--PAHGIILVHDLTNRKSEGNLRKWLAEV 111          
BLAST of mRNA_Ecto-sp13_S_contig8224.19580.1 vs. uniprot
Match: A0A812MU47_9DINO (RABC2A protein n=1 Tax=Symbiodinium sp. CCMP2456 TaxID=1519616 RepID=A0A812MU47_9DINO)

HSP 1 Score: 66.6 bits (161), Expect = 3.680e-10
Identity = 38/108 (35.19%), Postives = 57/108 (52.78%), Query Frame = 1
Query:   28 DPHHARVLVVGPMAAGKTTLVHSFCHGGGGNVVPGNTLPTVGCSVDVKLFAGGHPNRSIEFWDVGGSPDAALARGMFFEGCEAAGVLLVYDVSIPRSLRDLRVWVAEL 351
            D  + +++ +G +  GK+TLVHSFC  G  +VV     PTVG    VK+      +  +  WD  G       R  F++  EA GV+LV+DV+  RS ++L  W  E+
Sbjct:   18 DVINLKLMTLGDVGVGKSTLVHSFCADG--DVVLEAGEPTVGADFKVKMLKHAGKDFRVNIWDASGDLKFIDVRNEFYK--EAQGVVLVFDVTSKRSFQNLEKWTDEV 121          
BLAST of mRNA_Ecto-sp13_S_contig8224.19580.1 vs. uniprot
Match: A0A7S4M558_9EUKA (Hypothetical protein n=1 Tax=Prymnesium polylepis TaxID=72548 RepID=A0A7S4M558_9EUKA)

HSP 1 Score: 64.3 bits (155), Expect = 1.410e-9
Identity = 38/106 (35.85%), Postives = 57/106 (53.77%), Query Frame = 1
Query:   40 ARVLVVGPMAAGKTTLVHSFCHGGGGNVVPGNTLPTVGCSVDVKLFAGGHPNRSIEF--WDVGGSPDAALARGMFFEGCEAAGVLLVYDVSIPRSLRDLRVWVAEL 351
            A++ VVGP  AGKT+LV +FC GG      G T PT G  VD +L      ++ + F  WD  G+P  A     ++   E  G++LVYD + P +L  +  W+ ++
Sbjct:   43 AKIAVVGPAGAGKTSLVQAFCQGG---AFGGTTSPTFG--VDFRLHTMAVDSKQLRFHLWDTTGAPRFASITHAYYRVAE--GIVLVYDATDPAALDHVGGWLDQV 141          
BLAST of mRNA_Ecto-sp13_S_contig8224.19580.1 vs. uniprot
Match: A0A151ZE60_9MYCE (Rab GTPase n=1 Tax=Tieghemostelium lacteum TaxID=361077 RepID=A0A151ZE60_9MYCE)

HSP 1 Score: 62.4 bits (150), Expect = 4.430e-9
Identity = 32/122 (26.23%), Postives = 59/122 (48.36%), Query Frame = 1
Query:   22 NFDPHHARVLVVGPMAAGKTTLVHSFCHGGGGNVVPGNTLPTVGCSVDVKLFAGGHPNRSIEFWDVGGSPDAALARGMFFEGCEAAGVLLVYDVSIPRSLRDLRVWVAELDSAGISVLGESG 387
            N DP   ++LVVG +A GKT+++  +C+    N   G   PT+G     K    G+    ++ WD+ G         ++F+  +  G ++V+D + P +    + W  ++D+   +  GE G
Sbjct:   15 NEDPISLKILVVGKLACGKTSIIQRYCN----NDFQGRYKPTIGVDFQTKEIEVGNRRVILQLWDIAGQERFGHMTRVYFQNAD--GAIVVFDATRPGTFTGAKEWKDDIDNCFPAAEGEEG 130          
BLAST of mRNA_Ecto-sp13_S_contig8224.19580.1 vs. uniprot
Match: A0A7J6L878_PEROL (Uncharacterized protein n=1 Tax=Perkinsus olseni TaxID=32597 RepID=A0A7J6L878_PEROL)

HSP 1 Score: 59.3 bits (142), Expect = 4.190e-8
Identity = 35/116 (30.17%), Postives = 58/116 (50.00%), Query Frame = 1
Query:    7 ASAGKNFDPHHARVLVVGPMAAGKTTLVHSFCHGGGGNVVPGNTLPTVGCSVDVKLFAGGHPNRSIEFWDVGGSPDAALARGMFFEGCEAAGVLLVYDVSIPRSLRDLRVWVAELD 354
            A++ +++D   AR+LV+G  A GK++L+  FC     N    N + T+G    VK          ++ WD  G          ++    A GVLL+YD++ P+S +++  WV  LD
Sbjct:   15 AASDESYDAT-ARILVLGDSAVGKSSLLMRFCE----NRFDSNFVITIGVDFRVKTINIQDREVRLQIWDTAGQERFRTITPAYYRN--AMGVLLIYDMTDPKSFKNVDYWVRNLD 123          
BLAST of mRNA_Ecto-sp13_S_contig8224.19580.1 vs. uniprot
Match: UPI001C046546 (EF-hand calcium-binding domain-containing protein 4B n=1 Tax=Melanotaenia boesemani TaxID=1250792 RepID=UPI001C046546)

HSP 1 Score: 60.5 bits (145), Expect = 6.010e-8
Identity = 34/106 (32.08%), Postives = 55/106 (51.89%), Query Frame = 1
Query:   43 RVLVVGPMAAGKTTLVHSFCHGGGGNVVPGNTLPTVGCSVDVKLFAGGHPNRSIEFWDVGGSPDAALARGMFFEGCEAAGVLLVYDVSIPRSLRDLRVWVAELDSA 360
            +V++VG  + GKT+L+ SFC G      P +T  TVG    VK     +   +++ WD  G          FF   +A GV+++YDV++  S +D+R W+  +  A
Sbjct:  603 KVVLVGNSSVGKTSLLRSFCEG---RFHP-STTATVGIDYSVKTLTLDNMQIAMQLWDTAGQERYRSITKQFFR--KADGVVVMYDVTVEESFKDVRPWLINVQEA 702          
BLAST of mRNA_Ecto-sp13_S_contig8224.19580.1 vs. uniprot
Match: A0A7J6LHD6_PEROL (Uncharacterized protein n=2 Tax=Perkinsus TaxID=28000 RepID=A0A7J6LHD6_PEROL)

HSP 1 Score: 59.3 bits (142), Expect = 7.410e-8
Identity = 35/116 (30.17%), Postives = 58/116 (50.00%), Query Frame = 1
Query:    7 ASAGKNFDPHHARVLVVGPMAAGKTTLVHSFCHGGGGNVVPGNTLPTVGCSVDVKLFAGGHPNRSIEFWDVGGSPDAALARGMFFEGCEAAGVLLVYDVSIPRSLRDLRVWVAELD 354
            A++ +++D   AR+LV+G  A GK++L+  FC     N    N + T+G    VK          ++ WD  G          ++    A GVLL+YD++ P+S +++  WV  LD
Sbjct:   15 AASDESYDAT-ARILVLGDSAVGKSSLLMRFCE----NRFDSNFVITIGVDFRVKTINIQDREVRLQIWDTAGQERFRTITPAYYRN--AMGVLLIYDMTDPKSFKNVDYWVRNLD 123          
BLAST of mRNA_Ecto-sp13_S_contig8224.19580.1 vs. uniprot
Match: A0A7S4GJL6_9EUGL (Ras-related protein Rab n=1 Tax=Eutreptiella gymnastica TaxID=73025 RepID=A0A7S4GJL6_9EUGL)

HSP 1 Score: 58.5 bits (140), Expect = 1.080e-7
Identity = 31/104 (29.81%), Postives = 51/104 (49.04%), Query Frame = 1
Query:   43 RVLVVGPMAAGKTTLVHSFCHGGGGNVVPGNTLPTVGCSVDVKLFAGGHPNRSIEFWDVGGSPDAALARGMFFEGCEAAGVLLVYDVSIPRSLRDLRVWVAELD 354
            +VLVVG M  GKT+L+  + H    N+   N   T+G    +K     H    ++ WD+ G         ++++  EA G L+V+D++ P SL     W  ++D
Sbjct:   13 KVLVVGDMGVGKTSLIKRYVH----NIFTPNYKATIGVDFGLKELHWEHNTIRVQLWDIAGQERFGNLTRVYYK--EAVGALVVHDITKPDSLEAATKWKNDID 110          
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig8224.19580.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LGP2_ECTSI7.640e-9197.12LIP1, Ras superfamily GTPase n=1 Tax=Ectocarpus si... [more]
A0A6H5JCT8_9PHAE2.880e-8894.20Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
E9HD57_DAPPU8.230e-1436.52Uncharacterized protein n=4 Tax=Daphnia TaxID=6668... [more]
A0A812MU47_9DINO3.680e-1035.19RABC2A protein n=1 Tax=Symbiodinium sp. CCMP2456 T... [more]
A0A7S4M558_9EUKA1.410e-935.85Hypothetical protein n=1 Tax=Prymnesium polylepis ... [more]
A0A151ZE60_9MYCE4.430e-926.23Rab GTPase n=1 Tax=Tieghemostelium lacteum TaxID=3... [more]
A0A7J6L878_PEROL4.190e-830.17Uncharacterized protein n=1 Tax=Perkinsus olseni T... [more]
UPI001C0465466.010e-832.08EF-hand calcium-binding domain-containing protein ... [more]
A0A7J6LHD6_PEROL7.410e-830.17Uncharacterized protein n=2 Tax=Perkinsus TaxID=28... [more]
A0A7S4GJL6_9EUGL1.080e-729.81Ras-related protein Rab n=1 Tax=Eutreptiella gymna... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig8224contigEcto-sp13_S_contig8224:5878..6996 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Taxonomic scopeEukaryota
Stop0
Start1
Seed ortholog score82.4
Seed ortholog evalue1.8e-13
Seed eggNOG ortholog157072.XP_008868953.1
Preferred nameRABL3
Model size417
KEGG koko:K07933,ko:K07976
Hectar predicted targeting categoryother localisation
GOsGO:0003674,GO:0003824,GO:0003924,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0007275,GO:0007623,GO:0008150,GO:0009314,GO:0009416,GO:0009628,GO:0009639,GO:0009640,GO:0009791,GO:0010468,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0017111,GO:0019222,GO:0032501,GO:0032502,GO:0032922,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044464,GO:0048511,GO:0048856,GO:0050789,GO:0050896,GO:0060255,GO:0065007
Exons3
EggNOG free text desc.GTP binding
EggNOG OGs2CN0E@1,2QT3S@2759
Cds size417
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04031
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464093.4643717-CDS-Ecto-sp13_S_contig8224:5877..60481681464093.4643717-CDS-Ecto-sp13_S_contig8224:5877..6048Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8224 5878..6048 +
1681464093.4770994-CDS-Ecto-sp13_S_contig8224:6499..66421681464093.4770994-CDS-Ecto-sp13_S_contig8224:6499..6642Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8224 6500..6642 +
1681464093.4878654-CDS-Ecto-sp13_S_contig8224:6893..69961681464093.4878654-CDS-Ecto-sp13_S_contig8224:6893..6996Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig8224 6894..6996 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig8224.19580.1prot_Ecto-sp13_S_contig8224.19580.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig8224 5878..6996 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig8224.19580.1

>prot_Ecto-sp13_S_contig8224.19580.1 ID=prot_Ecto-sp13_S_contig8224.19580.1|Name=mRNA_Ecto-sp13_S_contig8224.19580.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=139bp
MDASAGKNFDPHHARVLVVGPMAAGKTTLVHSFCHGGGGNVVPGNTLPTV
GCSVDVKLFAGGHPNRSIEFWDVGGSPDAALARGMFFEGCEAAGVLLVYD
VSIPRSLRDLRVWVAELDSAGISVLGESGNNGRSSATAS
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mRNA from alignment at Ecto-sp13_S_contig8224:5878..6996+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig8224.19580.1 ID=mRNA_Ecto-sp13_S_contig8224.19580.1|Name=mRNA_Ecto-sp13_S_contig8224.19580.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=1119bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8224:5878..6996+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACGCATCCGCGGGCAAGAATTTCGACCCTCATCACGCCAGAGTCCT GGTTGTCGGGCCCATGGCAGCGGGCAAGACAACTCTGGTGCATTCCTTCT GCCACGGCGGCGGTGGGAATGTTGTGCCAGGAAACACGCTACCCACCGTC GGGTGCAGTGTCGACGTCAAGGTGCAACGCGAGCCAATAGGAACTATTTC TTGCTGCTGTAGCTGGTGTTTACGGGGCTACAGTAGTCTACTTGATGAAC GTTTTATTTTCCAAGATATCGTAGACCCATTCCGACGACCGTGTCGTCTT GCATCAGTGATGTGCATGATGAGTGGGACGGGTGTCAGGTGTCGCCCCTG ATTGCAAATCGGTCAACACTGCCGTGTTACATTTGCGTTTGGTCGTCAGG AGCAACTTCCTTGCGCAAGCGACATCTGCACTTTACCATAGCAAATAGCA GTCCCTGTGGAACATGCGCCGCGAACGTTTGTTCTCTGCTGAGCCCTTCT TGTTTGTTTCCCAACCTCAAAGCGTTGGATAACACACCACACAGCTTGCT CTGAAAGCATGACTGAAAGTATCGGTCGTGCCAGCTGGTACTCATCACAA AACACTCCTTGCCCACATGCAGCTGTTCGCAGGAGGGCACCCGAACCGGT CCATCGAGTTCTGGGACGTGGGCGGAAGCCCCGACGCCGCCCTTGCTCGA GGCATGTTCTTTGAAGGATGCGAAGCGGCAGGGGTGCTCTTGGTATATGA TGTGTCTATCCCGAGGTGAAGTGTAACGCCTTCACCGTATCACCCGGACG ATGATTTAGGATCCTGCAATATATTGCCACGAGAAACGCCTGCCGTTGAT GTGTATCTCTTGGCCACCTCCGATTTTATCGCCCCCTGAGAACCATTTGT CAGACAGCGGGTCTGCCGCGGTCACGACGCTCCGACCCAACGCCCTCTTA TTTTTTCTGCACCCTTGTCGCGACCACCACCGCTGCTGCTGCCAACAACA ACAACAACCACAATAGGTCGCTGCGAGACCTACGCGTGTGGGTCGCCGAG CTCGACTCCGCCGGGATCTCAGTTCTCGGCGAGAGCGGCAACAACGGCCG CTCGAGTGCCACCGCATCC
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig8224:5878..6996+

>mRNA_Ecto-sp13_S_contig8224.19580.1 ID=mRNA_Ecto-sp13_S_contig8224.19580.1|Name=mRNA_Ecto-sp13_S_contig8224.19580.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=417bp|location=Sequence derived from alignment at Ecto-sp13_S_contig8224:5878..6996+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGGACGCATCCGCGGGCAAGAATTTCGACCCTCATCACGCCAGAGTCCT
GGTTGTCGGGCCCATGGCAGCGGGCAAGACAACTCTGGTGCATTCCTTCT
GCCACGGCGGCGGTGGGAATGTTGTGCCAGGAAACACGCTACCCACCGTC
GGGTGCAGTGTCGACGTCAAGCTGTTCGCAGGAGGGCACCCGAACCGGTC
CATCGAGTTCTGGGACGTGGGCGGAAGCCCCGACGCCGCCCTTGCTCGAG
GCATGTTCTTTGAAGGATGCGAAGCGGCAGGGGTGCTCTTGGTATATGAT
GTGTCTATCCCGAGGTCGCTGCGAGACCTACGCGTGTGGGTCGCCGAGCT
CGACTCCGCCGGGATCTCAGTTCTCGGCGAGAGCGGCAACAACGGCCGCT
CGAGTGCCACCGCATCC
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