mRNA_Ecto-sp13_S_contig82188.19575.1 (mRNA) Ectocarpus species13 EcNAP12_S_4_19m

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_Ecto-sp13_S_contig82188.19575.1
Unique NamemRNA_Ecto-sp13_S_contig82188.19575.1
TypemRNA
OrganismEctocarpus species13 EcNAP12_S_4_19m (Ectocarpus species13 EcNAP12_S_4_19m)
Homology
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BLAST of mRNA_Ecto-sp13_S_contig82188.19575.1 vs. uniprot
Match: A0A6H5KXI8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KXI8_9PHAE)

HSP 1 Score: 103 bits (257), Expect = 2.100e-27
Identity = 55/67 (82.09%), Postives = 56/67 (83.58%), Query Frame = 1 
Query:    1 RFMLARRQSRCTSDEGSPDRGPTTLFDLEGGDTIRSSGSSPAVVTT-VAVVLVDELPGAFMPALTTT 198
            RFMLARRQ RC  DEGSPDRGPTT  DLE GDTI SSGSSPAVVTT VAVVL+D LPGA  PALTTT
Sbjct:   18 RFMLARRQRRCIRDEGSPDRGPTTPLDLESGDTIHSSGSSPAVVTTAVAVVLLDGLPGAITPALTTT 84
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BLAST of mRNA_Ecto-sp13_S_contig82188.19575.1 vs. uniprot
Match: D8LHF8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LHF8_ECTSI)

HSP 1 Score: 63.5 bits (153), Expect = 1.230e-11
Identity = 28/34 (82.35%), Postives = 30/34 (88.24%), Query Frame = 3 
Query:    3 VHACPKTKPVYERRGFSGPGTDDTFRSRGWRYHS 104
            VHACPKT PV++RRGFSGP TDDT RSRG RYHS
Sbjct:   47 VHACPKTAPVHKRRGFSGPETDDTSRSRGRRYHS 80
The following BLAST results are available for this feature:
BLAST of mRNA_Ecto-sp13_S_contig82188.19575.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KXI8_9PHAE2.100e-2782.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LHF8_ECTSI1.230e-1182.35Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Ecto-sp13_S_contig82188contigEcto-sp13_S_contig82188:94..321 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
Ectocarpus species13 EcNAP12_S_4_19m OGS1.02022-07-08
Properties
Property NameValue
Stop1
Start1
Model size228
Hectar predicted targeting categoryother localisation
Exons1
Cds size222
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464093.2097454-UTR-Ecto-sp13_S_contig82188:93..991681464093.2097454-UTR-Ecto-sp13_S_contig82188:93..99Ectocarpus species13 EcNAP12_S_4_19mUTREcto-sp13_S_contig82188 94..99 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1681464093.2200594-CDS-Ecto-sp13_S_contig82188:99..3211681464093.2200594-CDS-Ecto-sp13_S_contig82188:99..321Ectocarpus species13 EcNAP12_S_4_19mCDSEcto-sp13_S_contig82188 100..321 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_Ecto-sp13_S_contig82188.19575.1prot_Ecto-sp13_S_contig82188.19575.1Ectocarpus species13 EcNAP12_S_4_19mpolypeptideEcto-sp13_S_contig82188 100..321 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_Ecto-sp13_S_contig82188.19575.1

>prot_Ecto-sp13_S_contig82188.19575.1 ID=prot_Ecto-sp13_S_contig82188.19575.1|Name=mRNA_Ecto-sp13_S_contig82188.19575.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=polypeptide|length=74bp
MLARRQSRCTSDEGSPDRGPTTLFDLEGGDTIRSSGSSPAVVTTVAVVLV
DELPGAFMPALTTTWWPTPLVVQ*
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mRNA from alignment at Ecto-sp13_S_contig82188:94..321+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_Ecto-sp13_S_contig82188.19575.1 ID=mRNA_Ecto-sp13_S_contig82188.19575.1|Name=mRNA_Ecto-sp13_S_contig82188.19575.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=mRNA|length=228bp|location=Sequence derived from alignment at Ecto-sp13_S_contig82188:94..321+ (Ectocarpus species13 EcNAP12_S_4_19m)
AGGTTCATGCTTGCCCGAAGACAAAGCCGGTGTACGAGCGACGAGGGTTC
TCCGGACCGGGGACCGACGACACTTTTCGATCTCGAGGGTGGAGATACCA
TTCGTAGCTCTGGGAGTTCTCCGGCCGTGGTTACTACTGTCGCCGTAGTT
TTAGTAGATGAACTCCCGGGGGCATTCATGCCCGCTTTAACGACGACGTG
GTGGCCGACCCCGCTTGTAGTGCAGTGA
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Coding sequence (CDS) from alignment at Ecto-sp13_S_contig82188:94..321+

>mRNA_Ecto-sp13_S_contig82188.19575.1 ID=mRNA_Ecto-sp13_S_contig82188.19575.1|Name=mRNA_Ecto-sp13_S_contig82188.19575.1|organism=Ectocarpus species13 EcNAP12_S_4_19m|type=CDS|length=222bp|location=Sequence derived from alignment at Ecto-sp13_S_contig82188:94..321+ (Ectocarpus species13 EcNAP12_S_4_19m)
ATGCTTGCCCGAAGACAAAGCCGGTGTACGAGCGACGAGGGTTCTCCGGA
CCGGGGACCGACGACACTTTTCGATCTCGAGGGTGGAGATACCATTCGTA
GCTCTGGGAGTTCTCCGGCCGTGGTTACTACTGTCGCCGTAGTTTTAGTA
GATGAACTCCCGGGGGCATTCATGCCCGCTTTAACGACGACGTGGTGGCC
GACCCCGCTTGTAGTGCAGTGA
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